New quantitative trait loci for enhancing adaptation to salinity in rice from Hasawi, a Saudi landrace into three African cultivars at the reproductive stage

Euphytica

Volumn 200, Issue 1, 2014, Pages 45-60

  Bimpong, Isaac Kofi ^a   Manneh, Baboucarr ^a   Diop, Bathe ^a   Ghislain, Kanfany ^a   Sow, Abdulai ^a   Amoah, Nana Kofi Abaka ^a   Gregorio, Glenn ^b   Singh, Rakesh Kumar ^b   Ortiz, Rodomiro ^c   Wopereis, Marco ^d  

^a Africa Rice Centre   (Senegal)

^b INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^c SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^d AFRICA RICE CENTER AFRICARICE   (Benin)

Author keywords

Field phenotyping; Landrace; Marker aided breeding; Microsatellites; QTL; Rice; Salinity

Indexed keywords

EID: 84939893607     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-014-1134-0     Document Type: Article

References (40)

1. Al-Mssallem MQ, Hampton SM, Frost GS, Brown JE (2011) A study of Hasawi rice (Oryza sativa L.) in terms of its carbohydrate hydrolysis (in vitro) and glycaemic and insulinaemic indices (in vivo). Eur J Clin Nutr 65:627–634
2. Ammar MHM, Pandit A, Singh RK et al (2009) Mapping of QTLs controlling Na+.K+ and CI- ion concentrations in salt tolerant indica rice variety CSR27. J Plant Biochem Biotechnol 18:139–150
3. Bimpong IK, Serraj R, Chin JH, Ramos J, Mendoza ETM, Hernandez J, Mendioro MS, Brar DS (2011) Identification of QTLs for drought-related traits in alien introgression lines derived from crosses of Rice (Oryza sativa cv IR64) × O. glaberrima under lowland drought stress. J Plant Bio 54:237–250
4. Chin JH, Kim JH, Kwon SW, Cho YI, Pia ZZ, Han LZ, Koh HJ (2003) Identification of subspecies specific RAPD markers in rice. Korean J Breed 35:102–108
5. Claes B, Dekeyser R, Villarroel R, Vandenbulcke M, Bauw G, Van Montagu M, Caplan A (1990) Characterization of a rice gene showing organ-specific expression in response to salt stress and drought. Plant Cell 2:19–27
6. Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: version II. Plant Mol Bio Report 4:19–21
7. Evenson RE, Gollin D (1997) Genetic resources, international organization and improvement in rice varieties. Econ Dev Cult Change 45:471–500
8. Flowers TJ, Koyama ML, Flowers SA, Sudhakar C, Singh KP, Yeo AR (2000) QTL: their place in engineering tolerance of rice to salinity. J Exp Bot 51:99–106
9. Hossain M, Gollin D, Cabanilla V, Cabrera E, Jonson N, Khush GS, McLaren G (2003) International research and genetic improvement and its effect on productivity: the impact of international agricultural research. In: Evenson RE, Gollin D (eds) Crop variety improvement and its effect on productivity: the impact of international agricultural research. CABI, Wallingford, pp 71–107
10. Islam MR, Salam MA, Hassan L, Collard BCY, Singh RK, Gregorio GB (2011) QTL mapping for salinity tolerance at seedling stage in rice. Emir J Food and Agric 23:137–146
11. Ismail A, Tuong T (2009) Brackish water coastal zones of the monsoon tropics: challenges and opportunities. In: Haefele S, Ismail A (eds) Natural resource management for poverty reduction and environmental sustainability in rice-based systems. International Rice Research Institute, Los Banos, Philippines, pp 113–121
12. Jones MP (1986) Genetic analysis of salt tolerance in mangrove swamp rice, in Rice genetics. In: Proceedings of the international rice genetics symposium, 27–31 May 1985, Manila, Philippines. International Rice Research Institute, Metro Manila, Philippines, pp 411–422
13. Khatun S, Rizzo CA, Flower TJ (1995) Genotypic variation in the effect of salinity on fertility in rice. Plant Soil 173:239–250
14. Lançon F, Erenstein O (2002) Potential and prospects for rice production in West Africa. In: Sub-regional workshop on harmonization of policies and coordination of programmes on rice in the ECOWAS sub-region, Accra, Ghana, 25–28 February 2002. Bouake, Côte d’Ivoire: West Africa Rice Development Association. http://www.hubrural.org/IMG/pdf/potential-and-prospects-for-rice-production-wa.pdf
15. Lang NT, Yanagihara SS, Buu BC (2001) QTL analysis of salt tolerance in rice (Oryza sativa L.) SABRAO. J. Breed Genet 33:11–20
16. Lin HX, Zhu MZ, Yano M, Gao JP, Liang ZW, Su WA, Hu XH, Ren ZH, Chao DY (2004) QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance. Theor Appl Genet 108:253–260
17. Lutts S, Kinet JM, Bouhamont J (1995) Changes in plant response to NaCI during development of rice (Oryza sativa L.) Varieties differing in salinity resistance. J Exp Bot 46:1843–1852
18. Maas EV, Hoffiman GJ (1997) Crop salt tolerance-current assessment. J Irrig Drain Div ASCE 103(IR2):115–134
19. Mahmood IA, Quereshi RH, Aslam M (1999) Yield and quality of different rice (Oryza sativa L.) varieties as affected by soil salinity. Pak J Bot 31:475–479
20. McCouch SR, Cho YG, Yano M et al (1997) Report on QTL nomenclature. Rice Genet Newsl 14:11
21. McCouch S, Teytelman L, Xu Y et al (2002) Development of 2,240 new SSR markers for rice (Oryza sativa L.). DNA Res 9:199–207
22. Moradi F, Ismail AM (2007) Responses of photosynthesis, chlorophyll fluorescence and ROS scavenging system to salt stress during seeding and reproductive stage in rice. Ann Bot 99:1161–1173
23. Nakhoda B, Leung H, Mendioro MS, Mohammadi-nejad G, Ismail AM (2012) Isolation, characterization, and field evaluation of rice (Oryza sativa L., var. IR64) mutants with altered responses to salt stress. Field Crops Res 127:191–202
24. Negrao S, Courtois B, Ahmadi N, Abreu I, Saibo N, Oliveira MM (2011) Recent updates on salinity stress in rice: from physiological to molecular responses. Crit Rev Plant Sci 30:329–377
25. Nelson JC (1997) QGENE: software for marker-based genomic analysis and breeding. Mol Breed 3:239–245
26. Neraja CN, Maghirang-Rodriguez R, Pamplona A, Heuer S, Collard BCY, Septiningsih EM, Vergara G, Sanchez D, Xu K, Ismail AM et al (2007) A marker-assisted backcross approach for developing submergence-tolerant rice cultivars. Theor Appl Genet 115:767–776
27. Reddy MP, Sarla N, Laxminarayana SN, Reddy V, Siddiq EA (2005) Identification and mapping of yield and yield related QTLs from an Indian accession of Oryza rufipogon. BMC Genet 6:33
28. Ren ZH, Gao JP, Li LG, Cai XL, Huang W, Chao DY, Zhu MZ, Wang ZY, Luan S, Lin HX (2005) A rice quantitative trait locus for salt tolerance encodes a sodium transporter. Nat Genet 37:1141–1146
29. Sabouri H, Sabouri A (2009) New evidence of QTLs attributed to salinity tolerance in rice. Afr J Biotechnol 7:4376–4383
30. Sabouri H, Reizai AM, Mouomeni A, Kavoussi M, Sabouri A (2009) QTLs mapping of physiological traits related to salt tolerance in young rice seedlings. Biol Plant 53:657–662
31. SAS Institute Inc (2004) SAS/STAT® 9.2 user’s guide. SAS Institute Inc, Cary, North Carolina
32. Septiningsih EM, Pamplona AM, Sanchez DL, Neeraja CN, Vergara GV, Heuer S, Ismail AM, Mackill DJ (2009) Development of submergence tolerant rice cultivars: the Sub1 locus and beyond. Ann Bot 103:151–160
33. Singh SP (1999) Developments in plant breeding: common bean improvement in the twenty-first century. Kluwer Academic Publishers, Dordrecht
34. Singh RK, Flower TJ (2010) The physiology and molecular biology of the effects of salinity on rice. In: Pessarakli M (ed) Handbook of plant and crop stress, 3rd edn. Taylor and Francis, Boca Raton, Florida
35. Takehisa H, Shimodate T, Fukuta Y, Ueda T, Yano M, Yamaya T, Kameya T, Sato T (2004) Identification of quantitative trait loci for plant growth of rice in paddy field flooded with salt water. Field Crops Res 89:85–95
36. Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations and genetic marker potential. Genome Res 11:1441–1452
37. Thomson M, de Ocampo M, Egdane J et al (2010) Characterizing the Saltol quantitative trait locus for salinity tolerance in rice. Rice 3:148–160
38. Xu YB, Crouch JH (2008) Maker-assisted selection in plant breeding from publications to practice. Crop Sci 48:391–407
39. Zang J, Sun Y, Wang Y et al (2008) Dissection of genetic overlap of salt tolerance QTLs at the seedling and tillering stages using backcross introgression lines in rice. Sci China Ser C Life Sci 51:583–591
40. Zeng L, Shannon MC, Grieve CM (2002) Evaluation of salt tolerance in rice genotypes by multiple agronomic parameters. Euphytica 127:235–245