QTLs mapping of physiological traits related to salt tolerance in young rice seedlings

Biologia Plantarum

Volumn 53, Issue 4, 2009, Pages 657-662

  Sabouri, H ^a   Rezai, A M ^b   Moumeni, A ^c   Kavousi, A ^c   Katouzi, M ^c   Sabouri, A ^d  

^a GORGAN UNIVERSITY OF AGRICULTURAL SCIENCES AND NATURAL RESOURCES   (Iran)

^b ISFAHAN UNIVERSITY OF TECHNOLOGY   (Iran)

^c RICE RESEARCH INSTITUTE OF IRAN   (Iran)

^d UNIVERSITY OF GUILAN   (Iran)

Author keywords

Marker assisted selection; Oryza sativa; SSR

Indexed keywords

ORYZA SATIVA;

EID: 70450230463     PISSN: 00063134     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10535-009-0119-7     Document Type: Article

References (39)

1. Abler, B. S. B., Edwards, M. D., Stuber, C. W.: Isoenzymatic identification of quantitative trait loci in crosses of elite maize inbreds. - Crop Sci 31: 267-274, 1991.
2. Balint, A. F., Roder, M. S., Hell, R., Galiba, G., Borner, A.: Mapping of QTLs affecting copper tolerance and the Cu, Fe, Mn and Zn contents in the shoots of wheat seedlings. - Biol. Plant. 51: 129-134, 2007.
3. Bassam, B. J., Caetano-Anolles, G., Gresshoff, P. M.: Fast and sensitive silver staining of DNA in polyacrylamide gels. - Anal. Biochem. 196: 80-83, 1991.
4. Basten, C. J., Weir, B. S., Zeng, Z. B.: QTL Cartographer: A Reference Manual and Tutorial for QTL Mapping - Academic Press, New York 2001.
5. Chen, X., Temnykh, S., Xu, Y., Cho Y. G., McCouch. S. R.: Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). - Theor. appl. Genet. 95: 553-567, 1997.
6. Creste, S., Tulmann Neto, A., Figueira, A.: Detection of single sequence repeat polymorphisms in denaturing polyacrylamide sequencing gels by silver staining. - Plant. mol. Biol. Rep. 19: 299-306, 2001.
7. Dubcovsky, J., Santa, M. G., Epstein, E., Luo, M. O., Dvorak, J.: Mapping of K+/Na+ discrimination locus Kna1 in wheat. - Theor. appl. Genet. 92: 448-454, 1996.
8. Flowers, T. J., Troke, P. F., Yeo, A. R.: The mechanisms of salt tolerance in halophytes. - Annu. Rev. Plant. Physiol. 28: 89-121, 1977.
9. Garcia, A. B., Almeida, E., Iyer, S., Gerats, T., van Montagu, M., Caplan, A.: Effects of osmoprotectants upon NaCl stress in rice. - Plant Physiol. 115: 159-169, 1997.
10. Gregorio, G. B., Senadhira, D.: Genetic analysis of salinity tolerance in rice (Oryza sativa L.). - Theor. appl. Genet. 86: 333-338, 1993.
11. Gregorio, G. B., Senadhira, D., Mendoza, R.: Screening rice for salinity tolerance. - IRRI. Dis. Paper No. 22, Los Baños 1997.
12. Gu, X. Y., Zhen, S. L., Yan, X. L., Lu, Y. G.: [Analysis of generation means for the inheritance of salt tolerance in rice seedling.] - Acta. agron. Sin. 6: 686-690, 1999. [In Chin.].
13. Kosambi, D. D.: The estimation of map distances from recombination values. - Ann. Eugen. 12: 172-175, 1944.
14. Koyama, M. L., Levesley, A., Koebner, R. M. D., Flowers, T. J., Yeo, A. R.: Quantitative trait loci for component physiological trait determining salt tolerance in rice. - Plant. Physiol. 125: 406-422, 2001.
15. Lee, S. Y., Ahn, Y. S., Cha, D. W., Yun, M. C., Lee, J. C., Ko, K. S., Lee, K. S., Eun, M. Y.: Mapping QTLs related to salinity tolerance of rice at the young seedling stage. - Plant. Breed. 126: 43-46, 2007.
16. Lin, H. X., Yanagihara, S., Zhuang, J. Y., Senboku, T., Zheng, K. L., Yashima, S.: Identification of QTL for salt tolerance in rice via molecular markers. - Chin. J. Rice Sci. 12: 72-78, 1998.
17. Lin, H. X., Zhu, M. Z., Yano, M., Gao, J. P., Liang, Z. W., Su, W. A., Hu, X. H., Ren, Z. H., Chao, D. Y.: QTLs for Na and K uptake of the shoots and roots controlling rice salt tolerance. - Theor. appl. Genet. 108: 253-260, 2004.
18. Manly, K. F., Olson, J. M.: Overview of QTL mapping software and introduction to map manager QTX. - Mammalian Genome 10: 327-334, 1999.
19. McCouch, S. R., Teytelman, L., Xu, Y., Lobos, K. B., Clare, K., Walton, M., Fu, B., Maghirang, R., Li, Z., Xing, Y., Zhang, Q., Kono, I., Yano, M., Fjellstrom, R., De Clerck, G., Schneider, D., Cartinhour, S., Ware, D., Stein, L.: Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). - DNA Res. 9: 199-207, 2002.
20. Ming, Z. Y., Jian F. W., Hong Y. C., Hu Q. Z., Hong S. Z.: Inheritance and QTL mapping of salt tolerance in rice. - Rice Sci. 12: 25-32, 2005.
21. Moeljopawiro, S., Ikehashi, H.: Inheritance of salt tolerance in rice. - Euphytica, 30: 291-300, 1981.
22. Paterson, A. H.: Making genetic maps. - In: Paterson, A. H. (ed.): Genome Mapping in Plants. Pp. 23-39. Academic Press, Austin 1996.
23. Prasad, S. R., Bagali, P. G., Hittalmani, S., Shashidhar, H. E.: Molecular mapping of quantitative trait loci associated with seedling tolerance to salt stress in rice (Oryza sativa L.). - Curr. Sci. 78: 162-164, 2000.
24. Sabouri, H., Rezai, A., Moumeni, A., Kavousi, M.: Investigation of genetic diversity of Iranian rice genotypes under salinity condition: compare means, sensitive and tolerance index. - In: Bocchi, S., Ferrero, A., Porro, A. (ed.): Proceedings of the 4th International Temperate Rice Conference. Pp. 50-51. Tipografia Fiordo, Novara 2007a.
25. Sabouri, H., Rezai, A., Moumeni, A., Kavousi, M.: Investigation of genetic diversity of Iranian rice genotypes under salinity condition: multivariate analysis. In: In: Bocchi, S., Ferrero, A., Porro, A. (ed.): Proceedings of the 4th International Temperate Rice Conference. Pp. 52-53. Tipografia Fiordo, Novara 2007b.
26. Sabouri, H., Rezai, A., Moumeni, A., Kavousi, M.: Study the variation of physiological and agronomical characters Iranian rice (Oryza sativa L.) cultivars in seedling and vegetative stages under salinity condition. - In: Bocchi, S., Ferrero, A., Porro, A. (ed.): Proceedings of the 4th International Temperate Rice Conference. Pp. 284-285. Tipografia Fiordo, Novara 2007c.
27. Saghi Maroof, M. A., Biyashev, R. M., Yang, G. P., Zhang, Q., Allard, R. W.: Extraordinarily polymorphic microsatillate DNA in barely species diversity, choromosomal location, and population dynamics. - Proc. nat. Acad. Sci. USA. 91: 5466-5570, 1994.
28. Silva, C., Martinez, V., Carvajal, M.: Osmotic versus toxic effects of NaCl on pepper plants. - Biol. Plant. 52: 72-79, 2008.
29. Takehisa, H., Shimodate, T., Fukuta, Y., Ueda, T., Yano, M., Yamaya, T., Kameya T., Sato, T.: Identification of quantitative trait loci for plant growth of rice in paddy field flooded with salt water. - Field Crops Res. 89. 85-95, 2004.
30. Temnykh, S., Park, W. D., Ayres, N., Cartinhour, S., Hauck, N., Lipovich, L., Cho, Y. G., Ishii, T., McCouch, S. R.: Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). - Theor. appl. Genet. 100: 697-712, 2000.
31. Veldboom, L. R., Lee, M., Woodman, W. L.: Molecular-markers facilitated studies in an elite maize population. I. Linkage analysis and determination of QTLs for morphological traits. - Theor. appl. Genet. 88: 7-16, 1994.
32. Waling, I., Van, W., Houba, V. J. G., van der Lee, I. J.: Soil and Plant Analysis. - Wageningen Agr. Univ., Wageningen 1989.
33. Xu, Y.: Quantitative trait loci: separating, pyramiding, and cloning. - Plant. Breed. Rev. 15: 85-139, 1997.
34. Yadav, R., Courtois, B., Huang, N., McLaren, G.: Mapping genes controlling root morphology and root distribution in a double haploid population of rice. - Theor. appl. Genet. 94: 619-632, 1997.
35. Yeo, A. R., Flowers, T. J.: Mechanisms of salinity resistance in rice and their role as physiological criteria in plant breeding. - In: Staples, R. C., Toenniessen, G. H. (ed.): Salinity Tolerance in Plant: Strategies for Crop Improvement. - John Wiley and Sons, New York 1984.
36. Yeo, A. R., Flowers, T. J.: Selection for physiological characters - examples from breeding for salt tolerance. - In: Flowers, T. J., Jones, M. B. (ed.): Plant under Stress. Biochemistry, Physiology and Ecology and their Application to Plant Improvement. Pp. 217-234. Cambridge University Press, Cambridge 1989.
37. Yoshida, S., Forno, D. A., Cock, J. H., Gomez, K. A.: Laboratory Manual for Physiological Studies of Rice. - IRRI, Los Baños 1976.
38. Zeng, Z. B.: Precision mapping of quantitative traits loci. - Genetics 136: 1457-1468, 1994.
39. Zhang, G. Y., Guo, Y., Chen, S. L., Chen, S. Y.: RFLP tagging of a salt tolerance gene in rice. - Plant. Sci. 110: 227-234, 1995.