Mitochondrial DNA haplogroups and homogeneity in the Korean population

Genes and Genomics

Volumn 36, Issue 5, 2014, Pages 583-590

  Hong, Seung Beom ^a,b   Kim, Ki Cheol ^a   Kim, Wook ^a  

^a Dankook University   (South Korea)

^b National Forensic Service   (South Korea)

Author keywords

Forensic DNA database; Koreans; mtDNA haplogroups; Population genetics; Population structure

Indexed keywords

EID: 84939888359     PISSN: 19769571     EISSN: 20929293     Source Type: Journal    
DOI: 10.1007/s13258-014-0194-9     Document Type: Article

References (34)

1. Adachi N, Shinoda K, Umetsu K, Matsumura H (2009) Mitochondrial DNA analysis of Jomon skeletons from the Funadomari site, Hokkaido, and its implication for the origins of Native American. Am J Phys Anthropol 138:255–265
2. Bermisheva MA, Kutuev IA, Spitsyn VA, Villems R, Batyrova AZ, Korshunova TIu, Khusnutdinova EK (2005) Analysis of mitochondrial DNA variation in the population of Oroks. Genetika 41:78–84
3. Brion M, Sobrino B, Blanco-Verea A, Lareu MV, Carracedo A (2005) Hierarchical analysis of 30 Y-chromosome SNPs in European populations. Int J Legal Med 119:10–15
4. Budowle B, Allard MW, Wilson MR, Chakraborty R (2003) Forensics and mitochondrial DNA: applications, debates, and foundations. Annu Rev Genomics Hum Genet 4:119–141
5. Chen F, Wang SY, Zhang RZ, Hu YH, Gao GF, Liu YH, Kong QP (2008) Analysis of mitochondrial DNA polymorphisms in Guangdong Han Chinese. Forensic Sci Int Genet 2:150–153
6. Choi ML, Rhee SN (2001) Korean archaeology for the 21st century: from prehistory to State formation. Seoul J Kor Stud 14:117–147
7. Cockerton S, McManus K, Buckleton J (2012) Interpreting lineage markers in view of subpopulation effects. Forensic Sci Int Genet 6:393–397
8. Derenko MV, Lunkina AV, Maliarchuk BA, Zakharov IA, Tsedev T, Park KS, Cho YM, Lee NK, Chu CH (2004) Restriction polymorphism of mitochondrial DNA in Koreans and Mongolians. Genetika 40:1562–1570
9. Excoffier L, Lischer HE (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567
10. Gill P, Ivanov PL, Kimpton C, Piercy R, Benson N, Tully G, Evett I, Hagelberg E, Sullivan K (1994) Identification of the remains of the Romanov family by DNA analysis. Nat Genet 6:130–135
11. Holland MM, Parson TJ (1999) Mitochondrial DNA sequence analysis—validation and use for forensic casework. Forensic Sci Rev 11:21–50
12. Jin HJ, Kwak KD, Hammer MF, Nakahori Y, Shinka T, Lee JW, Jin F, Jia X, Tyler-Smith C, Kim W (2003) Y-chromosomal DNA haplogroups and their implications for the dual origins of the Koreans. Hum Genet 114:27–35
13. Jin HJ, Kwak KD, Hong SB, Shin DJ, Han MS, Tyler-Smith C, Kim W (2006) Forensic genetic analysis of mitochondrial DNA hypervariable region I/II sequences: an expanded Korean population database. Forensic Sci Int 158:125–130
14. Jin HJ, Tyler-Smith C, Kim W (2009) The peopling of Korea revealed by analyses of mitochondrial DNA and Y-chromosomal markers. PLoS ONE 4:e4210
15. Kaderali L, Deshpande A, Nolan JP, White PS (2003) Primer-design for multiplexed genotyping. Nucleic Acids Res 31:1796–1802
16. Kim SH, Han MS, Kim W, Kim W (2010) Y chromosome homogeneity in the Korean population. Int J Legal Med 124:653–657
17. Kivisild T, Tolk HV, Parik J, Wang Y, Papiha SS, Bandelt HJ, Villems R (2002) The emerging limbs and twigs of the East Asian mtDNA tree. Mol Biol Evol 19:1737–1751
18. Lee JW, Lee HS, Hwang JJ (2002) Statistical analysis for estimating heterogeneity of the Korean population in DNA typing using STR loci. Int J Legal Med 116:153–160
19. Lee HY, Yoo JE, Park MJ, Chung U, Kim CY, Shin KJ (2006a) East Asian mtDNA haplogroup determination in Koreans: haplogroup-level coding region SNP analysis and subhaplogroup-level control region sequence analysis. Electrophoresis 27:4408–4418
20. Lee HY, Yoo JE, Park MJ, Chung U, Shin KJ (2006b) Mitochondrial DNA control region sequences in Koreans: identification of useful variable sites and phylogenetic analysis for mtDNA data quality control. Int J Legal Med 120:5–14
21. Marrero AR, Bravi C, Stuart S, Long JC, Pereira das Neves Leite F, Kommers T, Carvalho CM, Pena SD, Ruiz-Linares A, Salzano FM, Cátira Bortolini M (2007) Pre- and post-Columbian gene and cultural continuity: the case of the Gaucho from southern Brazil. Hum Hered 64:160–171
22. Maruyama S, Komuro T, Izawa H, Tsutsumi H (2013) Analysis of human mitochondrial DNA polymorphisms in the Japanese population. Biochem Genet 51:33–70
23. Melton T, Clifford S, Kayser M, Nasidze I, Batzer M, Stoneking M (2001) Diversity and heterogeneity in mitochondrial DNA of North American populations. J Forensic Sci 46:46–52
24. Pakendorf B, Stoneking M (2005) Mitochondrial DNA and human evolution. Annu Rev Genomics Hum Genet 6:165–183
25. Quintana-Murci L, Quach H, Harmant C, Luca F, Massonnet B, Patin E, Sica L, Mouguiama-Daouda P, Comas D, Tzur S, Balanovsky O, Kidd KK, Kidd JR, van der Veen L, Hombert JM, Gessain A, Verdu P, Froment A, Bahuchet S, Heyer E, Dausset J, Salas A, Behar DM (2008) Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter-gatherers and Bantu-speaking farmers. Proc Natl Acad Sci USA 105:1596–1601
26. Scholes C, Siddle K, Ducourneau A, Crivellaro F, Järve M, Rootsi S, Bellatti M, Tabbada K, Mormina M, Reidla M, Villems R, Kivisild T, Lahr MM, Migliano AB (2011) Genetic diversity and evidence for population admixture in Batak Negritos from Palawan. Am J Phys Anthropol 146:62–72
27. Tajima A, Hayami M, Tokunaga K, Juji T, Matsuo M, Marzuki S, Omoto K, Horai S (2004) Genetic origins of the Ainu inferred from combined DNA analyses of maternal and paternal lineages. J Hum Genet 49:187–193
28. Tanaka M, Cabrera VM, González AM, Larruga JM, Takeyasu T, Fuku N, Guo LJ, Hirose R, Fujita Y, Kurata M, Shinoda K, Umetsu K, Yamada Y, Oshida Y, Sato Y, Hattori N, Mizuno Y, Arai Y, Hirose N, Ohta S, Ogawa O, Tanaka Y, Kawamori R, Shamoto-Nagai M, Maruyama W, Shimokata H, Suzuki R, Shimodaira H (2004) Mitochondrial genome variation in eastern Asia and the peopling of Japan. Genome Res 14:1832–1850
29. Umetsu K, Tanaka M, Yuasa I, Adachi N, Miyoshi A, Kashimura S, Park KS, Wei YH, Watanabe G, Osawa M (2005) Multiplex amplified product-length polymorphism analysis of 36 mitochondrial single-nucleotide polymorphisms for haplogrouping of East Asian populations. Electrophoresis 26:91–98
30. Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JA (2007) Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res 35:71–74
31. van Oven M, Kayser M (2009) Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat 30:E386–E394
32. van Oven M, Hämmerle JM, van Schoor M, Kushnick G, Pennekamp P, Zega I, Lao O, Brown L, Kennerknecht I, Kayser M (2011) Unexpected island effects at an extreme: reduced Y chromosome and mitochondrial DNA diversity in Nias. Mol Biol Evol 28:1349–1361
33. Wen B, Li H, Lu D, Song X, Zhang F, He Y, Li F, Gao Y, Mao X, Zhang L, Qian J, Tan J, Jin J, Huang W, Deka R, Su B, Chakraborty R, Jin L (2004) Genetic evidence supports demic diffusion of Han culture. Nature 431:302–305
34. Yao YG, Kong QP, Bandelt HJ, Kivisild T, Zhang YP (2002) Phylogeographic differentiation of mitochondrial DNA in Han Chinese. Am J Hum Genet 70:635–651