메뉴 건너뛰기




Volumn 11, Issue 3, 2015, Pages 518-528

Controlling the quality of metabolomics data: new strategies to get the best out of the QC sample

Author keywords

False positives; In silico; QC surrogate; Quality assurance procedure; Quality control samples; Recursive analysis

Indexed keywords


EID: 84939883000     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-014-0712-4     Document Type: Article
Times cited : (144)

References (13)
  • 1
    • 84870947005 scopus 로고    scopus 로고
    • Combination of LC–MS- and GC–MS-based metabolomics to study the effect of ozonated autohemotherapy on human blood
    • COI: 1:CAS:528:DC%2BC38Xhs1GlsrnL, PID: 23148940
    • Ciborowski, M., Lipska, A., Godzien, J., Ferrarini, A., Korsak, J., Radziwon, P., et al. (2012a). Combination of LC–MS- and GC–MS-based metabolomics to study the effect of ozonated autohemotherapy on human blood. Journal of Proteome Research,11, 6231–6241. doi:10.1021/pr3008946.
    • (2012) Journal of Proteome Research , vol.11 , pp. 6231-6241
    • Ciborowski, M.1    Lipska, A.2    Godzien, J.3    Ferrarini, A.4    Korsak, J.5    Radziwon, P.6    Tomasiak, M.7
  • 2
    • 84857527060 scopus 로고    scopus 로고
    • Metabolomics with LC–QTOF–MS permits the prediction of disease stage in aortic abdominal aneurysm based on plasma metabolic fingerprint
    • COI: 1:CAS:528:DC%2BC38XjsFygtLk%3D, PID: 22384120
    • Ciborowski, M., Teul, J., Martin-Ventura, J. L., Egido, J., & Barbas, C. (2012b). Metabolomics with LC–QTOF–MS permits the prediction of disease stage in aortic abdominal aneurysm based on plasma metabolic fingerprint. PLoS ONE,7, e31982. doi:10.1371/journal.pone.0031982.
    • (2012) PLoS ONE , vol.7 , pp. 31982
    • Ciborowski, M.1    Teul, J.2    Martin-Ventura, J.L.3    Egido, J.4    Barbas, C.5
  • 4
    • 79959913950 scopus 로고    scopus 로고
    • Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
    • COI: 1:CAS:528:DC%2BC3MXotlCmtL8%3D, PID: 21720319
    • Dunn, W. B., Broadhurst, D., Begley, P., Zelena, E., Francis-McIntyre, S., Anderson, N., et al. (2011). Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nature Protocols,6, 1060–1083. doi:10.1038/nprot.2011.335.
    • (2011) Nature Protocols , vol.6 , pp. 1060-1083
    • Dunn, W.B.1    Broadhurst, D.2    Begley, P.3    Zelena, E.4    Francis-McIntyre, S.5    Anderson, N.6    Brown, M.7
  • 5
    • 84867376046 scopus 로고    scopus 로고
    • A QC approach to the determination of day-to-day reproducibility and robustness of LC–MS methods for global metabolite profiling in metabonomics/metabolomics
    • COI: 1:CAS:528:DC%2BC38XhsVOhsb3J, PID: 23046266
    • Gika, H. G., Theodoridis, G. A., Earll, M., & Wilson, I. D. (2012). A QC approach to the determination of day-to-day reproducibility and robustness of LC–MS methods for global metabolite profiling in metabonomics/metabolomics. Bioanalysis,4, 2239–2247. doi:10.4155/bio.12.212.
    • (2012) Bioanalysis , vol.4 , pp. 2239-2247
    • Gika, H.G.1    Theodoridis, G.A.2    Earll, M.3    Wilson, I.D.4
  • 6
    • 34548146614 scopus 로고    scopus 로고
    • Within-day reproducibility of an HPLC–MS-based method for metabonomic analysis: Application to human urine
    • COI: 1:CAS:528:DC%2BD2sXns1Cktbo%3D, PID: 17625818
    • Gika, H. G., Theodoridis, G. A., Wingate, J. E., & Wilson, I. D. (2007). Within-day reproducibility of an HPLC–MS-based method for metabonomic analysis: Application to human urine. Journal of Proteome Research,6, 3291–3303. doi:10.1021/pr070183p.
    • (2007) Journal of Proteome Research , vol.6 , pp. 3291-3303
    • Gika, H.G.1    Theodoridis, G.A.2    Wingate, J.E.3    Wilson, I.D.4
  • 7
    • 84884982446 scopus 로고    scopus 로고
    • From numbers to a biological sense: How the strategy chosen for metabolomics data treatment may affect final results. A practical example based on urine fingerprints obtained by LC–MS
    • COI: 1:CAS:528:DC%2BC3sXht1OqurnP, PID: 23775708
    • Godzien, J., Ciborowski, M., Angulo, S., & Barbas, C. (2013a). From numbers to a biological sense: How the strategy chosen for metabolomics data treatment may affect final results. A practical example based on urine fingerprints obtained by LC–MS. Electrophoresis,34, 2812–2826. doi:10.1002/elps.201300053.
    • (2013) Electrophoresis , vol.34 , pp. 2812-2826
    • Godzien, J.1    Ciborowski, M.2    Angulo, S.3    Barbas, C.4
  • 8
    • 84881029206 scopus 로고    scopus 로고
    • In-vial dual extraction liquid chromatography coupled to mass spectrometry applied to streptozotocin-treated diabetic rats. Tips and pitfalls of the method
    • COI: 1:CAS:528:DC%2BC3sXhtFCgsL%2FJ, PID: 23871561
    • Godzien, J., Ciborowski, M., Whiley, L., Legido-Quigley, C., Ruperez, F. J., Barbas, C., et al. (2013b). In-vial dual extraction liquid chromatography coupled to mass spectrometry applied to streptozotocin-treated diabetic rats. Tips and pitfalls of the method. Journal of Chromatography A,1304, 52–60. doi:10.1016/j.chroma.2013.07.029.
    • (2013) Journal of Chromatography A , vol.1304 , pp. 52-60
    • Godzien, J.1    Ciborowski, M.2    Whiley, L.3    Legido-Quigley, C.4    Ruperez, F.J.5    Barbas, C.6
  • 9
    • 79955415547 scopus 로고    scopus 로고
    • Metabolomic approach with LC-QTOF to study the effect of a nutraceutical treatment on urine of diabetic rats
    • PID: 21087057
    • Godzien, J., et al. (2010). Metabolomic approach with LC-QTOF to study the effect of a nutraceutical treatment on urine of diabetic rats. Journal of Proteome Research,10, 837–844. doi:10.1021/pr100993x.
    • (2010) Journal of Proteome Research , vol.10 , pp. 837-844
    • Godzien, J.1
  • 10
    • 48949086347 scopus 로고    scopus 로고
    • Global metabolic profiling analysis on human urine by UPLC-TOFMS: Issues and method validation in nutritional metabolomics
    • COI: 1:CAS:528:DC%2BD1cXps12itrk%3D
    • Guy, P. A., Tavazzi, I., Bruce, S. J., Ramadan, Z., & Kochhar, S. (2008). Global metabolic profiling analysis on human urine by UPLC-TOFMS: Issues and method validation in nutritional metabolomics. Journal of Chromatography B,871, 253–260. doi:10.1016/j.jchromb.2008.04.034.
    • (2008) Journal of Chromatography B , vol.871 , pp. 253-260
    • Guy, P.A.1    Tavazzi, I.2    Bruce, S.J.3    Ramadan, Z.4    Kochhar, S.5
  • 11
    • 84858710198 scopus 로고    scopus 로고
    • Optimizing the use of quality control samples for signal drift correction in large-scale urine metabolic profiling studies
    • COI: 1:CAS:528:DC%2BC38XosFektA%3D%3D, PID: 22264131
    • Kamleh, M. A., Ebbels, T. M. D., Spagou, K., Masson, P., & Want, E. J. (2012). Optimizing the use of quality control samples for signal drift correction in large-scale urine metabolic profiling studies. Analytical Chemistry,84, 2670–2677. doi:10.1021/ac202733q.
    • (2012) Analytical Chemistry , vol.84 , pp. 2670-2677
    • Kamleh, M.A.1    Ebbels, T.M.D.2    Spagou, K.3    Masson, P.4    Want, E.J.5
  • 12
    • 70449426567 scopus 로고    scopus 로고
    • An LC–MS-based metabolomics approach for exploring urinary metabolome modifications after cocoa consumption
    • COI: 1:CAS:528:DC%2BD1MXht1Wkur7I, PID: 19754154
    • Llorach, R., Urpi-Sarda, M., Jauregui, O., Monagas, M., & Andres-Lacueva, C. (2009). An LC–MS-based metabolomics approach for exploring urinary metabolome modifications after cocoa consumption. Journal of Proteome Research,8, 5060–5068. doi:10.1021/pr900470a.
    • (2009) Journal of Proteome Research , vol.8 , pp. 5060-5068
    • Llorach, R.1    Urpi-Sarda, M.2    Jauregui, O.3    Monagas, M.4    Andres-Lacueva, C.5
  • 13
    • 33749074122 scopus 로고    scopus 로고
    • A pragmatic and readily implemented quality control strategy for HPLC–MS and GC–MS-based metabonomic analysis
    • COI: 1:CAS:528:DC%2BD28XpvF2ms70%3D, PID: 17003852
    • Sangster, T., Major, H., Plumb, R., Wilson, A. J., & Wilson, I. D. (2006). A pragmatic and readily implemented quality control strategy for HPLC–MS and GC–MS-based metabonomic analysis. Analyst,131, 1075–1078. doi:10.1039/b604498k.
    • (2006) Analyst , vol.131 , pp. 1075-1078
    • Sangster, T.1    Major, H.2    Plumb, R.3    Wilson, A.J.4    Wilson, I.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.