The role of databases in marine natural products research

Handbook of Marine Natural Products

Volumn , Issue , 2012, Pages 389-421

  Blunt, John ^a   Munro, Murray ^a   Upjohn, Meg ^a  

^a UNIVERSITY OF CANTERBURY   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84939537788     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-90-481-3834-0_6     Document Type: Chapter

References (45)

1. Buckingham J (ed) (2011) Dictionary of natural products on DVD. Chapman & Hall/CRC, Boca Raton
2. CAS, www.cas.org. Accessed 18 Nov 2011
3. Reaxys, https://www.reaxys.com/info/. Accessed 18 Nov 2011
4. CAS Registry, www.cas.org/expertise/cascontent/registry/index.html. Accessed 18 Nov 2011
5. STN, http://www.stn-international.de/index.php?id=123. Accessed 18 Nov 2011
6. SciFinder, http://www.cas.org/products/scifindr/. Accessed 18 Nov 2011
7. Chem Net Base, http://www.chemnetbase.com/. Accessed 18 Nov 2011
8. Blunt JW, Munro MHG (eds) (2008) Dictionary of marine natural products. Chapman & Hall/CRC, Boca Raton
9. Jaspars M (2008) Underwater chemistry. Chem World 5(Jan). http://www.rsc.org/chemistryworld/Issues/2008/January/Reviews.asp. Accessed 18 Nov 2011
10. AntiBase, http://www.wiley-vch.de/publish/dt/books/forthcomingTitles/LS00/3-527-32827-0/?sID=fdd57124490d0f87cfd550f72e2684d5. Accessed 18 Nov 2011
11. SpecInfo, http://cds.dl.ac.uk/cds/datasets/spec/specinfo/specinfo.html. Accessed 18 Nov 2011
12. MarinLit, http://www.chem.canterbury.ac.nz/marinlit/marinlit.shtml. Accessed 18 Nov 2011
13. ACD/Labs, http://www.acdlabs.com. Accessed 18 Nov 2011
14. AntiMarin: a combination database formed from AntiBase and MarinLit. http://www.wileyvch. de/publish/dt/books/forthcomingTitles/LS00/3-527-32827-0/?sID=fdd57124490d0f87cfd550f72e2684d5 and http://www.chem.canterbury.ac.nz/marinlit/marinlit.shtml. Accessed 18 Nov 2011
15. http://depth-first.com/articles/2011/10/12/sixty-four-free-chemistry-databases/. Accessed 18 Nov 2011
16. Williams AJ (2008) Public chemical compound databases. Current Opin Drug Discov Develop 11: 393-404
17. PubChem, http://pubchem.ncbi.nlm.nih.gov/. Accessed 18 Nov 2011
18. CSLS, http://cactus.nci.nih.gov/lookup/. Accessed 18 Nov 2011
19. ChemSpider, http://www.chemspider.com/. Accessed 18 Nov 2011
20. NaprAlert, http://www.napralert.org/. Accessed 18 Nov 2011
21. Perry NB, Ettouati L, Litaudon M et al (1994) Alkaloids from the Antarctic sponge Kirkpatrickia varialosa Part 1: Variolin B, a new antitumor and antiviral compound. Tetrahedron 50: 3987-3892
22. Nielsen KF, Smedsgaard J (2003) Fungal metabolite screening: database of 474 mycotoxins and fungal metabolites for dereplication by standardized liquid chromatography-UV-mass spectrometry methodology. J Chrom A 1002: 111-136
23. Dumdei EJ, Blunt JW, Munro MHG et al (1997) Isolation of the calyculins, calyculinamides and swinholide H from the New Zealand deep water sponge Lamellomorpha strongylata. J Org Chem 62: 2636-2639
24. The Marine Group, University of Canterbury’s UV data was acquired on a Dionex HPLC using Chromeleon software. The library of known compounds is available on application to murray.munro@canterbury.ac.nz or john.blunt@canterbury.ac.nz
25. NMR Shift DB, http://nmrshiftdb.nmr.uni-koeln.de/. Accessed 18 Nov 2011
26. Naproc-13, http://c13.usal.es/c13/usuario/views/inicio.jsp?lang=en&country=EN. Accessed 18 Nov 2011
27. SuperNatural, http://bioinformatics.charite.de/supernatural/. Accessed 18 Nov 2011
28. SDBS (Spectral Database for Organic Compounds), http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_index.cgi?lang1/4eng. Accessed 18 Nov 2011
29. Wellington KD, Cambie RC, Rutledge PS et al (2000) Chemistry of sponges 19. Novel bioactive metabolites from Hamigera taragensis. J Nat Prod 63: 79-85
30. Davis RA, Aalbersberg W, Meo S et al (2002) The isolation and synthesis of polyandrocarpamines A and. Two new 2-aminoimidazolone compounds from the Fijian ascidian, Polyandrocarpa sp. Tetrahedron 58: 3263-3269
31. MacLean WJ (2005) Unpublished results. PhD thesis. University of Canterbury, Christchurch
32. Suzuki K, Kuwahara A, Nishikiori T et al (1997) NF00659A1, A2, A3, B1 and B2, novel antitumor antibiotics produced by Aspergillus s. NF 00659. II. Structural elucidation. J Antibiot 50: 318-324
33. Sun Lin (2009) Unpublished work. PhD thesis. University of Canterbury, Christchurch
34. Wright AD, Goclik E, Konig GM (2003) Oxygenated analogues of gorgosterol and ergosterol from the soft coral Capnella lacertiliensis. J Nat Prod 66: 157-160
35. See for example http://www.bruker-biospin.com/cryoprobes.html, or http://www.varianinc. com/cgi-bin/nav?products/nmr/probes/liquids/cold_probes/index&cid=LNMJOLHKFI. Accessed 18 Nov 2011
36. http://www.protasis.com/OMNMR/index.htm. Accessed 18 Nov 2011
37. Lang G, Mayhudin NA, Mitova MI et al (2008) Evolving trends in the dereplication of natural product extracts: new methodology for rapid, small-scale investigation of natural product extracts. J Nat Prod 71: 1595-1599
38. Mitova MI, Murphy AC, Lang G et al (2008) Evolving trends in the dereplication of natural product extracts. 2. The isolation of chrysaibol, an antibiotic peptaibol from a New Zealand sample of the mycoparasitic fungus Sepedonium chrysospermum. J Nat Prod 71: 1600-1603
39. Coreley DG, Durley RC (1994) Strategies for database dereplication of natural products. J Nat Prod 57: 1484-1490
40. GVK Biosciences Natural Product DB, http://www.gvkbio.com/db_products.html. Accessed 18 Nov 2011
41. Lei J, Zhou J (2002) A marine natural product database. J Chem Info Comput Sci 42: 742-748
42. Bitzer J, Kopcke B, Stadler M et al (2007) Accelerated dereplication of natural products, supported by reference libraries. Chimia 61: 332-338
43. Moss S, Bovermann G, Denay R et al (2007) Efficient structure elucidation of natural products in the pharmaceutical industry. Chimia 61: 346-349
44. The National Centre for Plant and Microbial Metabolomics, http://www.metabolomics.bbsrc. ac.uk/currentactivities.htm. Accessed 18 Nov 2011
45. CH-NMR-NP, http://www.las.jp/english/software/chnmrnp.html. Accessed 18 Nov 2011