Cellular phenotype database: A repository for systems microscopy data

Bioinformatics

Volumn 31, Issue 16, 2015, Pages 2736-2740

  Kirsanova, Catherine ^a   Brazma, Alvis ^a   Rustici, Gabriella ^a   Sarkans, Ugis ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; COMPUTER INTERFACE; CYTOLOGY; DATA BASE; MICROSCOPY; PHENOTYPE; PROCEDURES; STATISTICS;

CELLS; DATABASES AS TOPIC; MICROSCOPY; PHENOTYPE; STATISTICS AS TOPIC; USER-COMPUTER INTERFACE;

EID: 84939537725     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv199     Document Type: Article

References (17)

1. Di, Z. et al. (2012) Automated analysis of NF-jB nuclear translocation kinetics in high-throughput screening. PLoS One, 7, e52337.
2. Fuchs, F. et al. (2010) Clustering phenotype populations by genome-wide RNAi and multiparametric imaging. Clustering phenotype populations by genomewide RNAi andmultiparametric imaging. Mol. Syst. Biol. , 6, 370.
3. Gudjonsson, T. et al. (2012) TRIP12 and UBR5 suppress spreading of chromatin ubiquitylation at damaged chromosomes. Cell, 150, 697-709.
4. Guest, S. T. et al. (2011) A protein network-guided screen for cell cycle regulators in Drosophila. BMC Syst. Biol. , 5, art. no. 65.
5. Hancock, J. M. (2014) Phenomics, Ch. 5. CRC Press, Baco Raton, FL, http:// www. crcpress. com/product/isbn/9781466590953.
6. Jupp, S. et al. (2014) Data driven development of a Cellular Microscopy Phenotype Ontology (in press)
7. Langmead, B. and Salzberg, S. L. (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods, 9, 357-359.
8. Langmead, B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. , 10, R25.
9. Lock, J. G. and Strömblad, S. (2010) An emerging strategy for the life sciences. Exp. Cell Res. , 316, 1438-1444.
10. Neumann, B. et al. (2010) Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature, 464, 721-727.
11. Moudry, P. et al. (2011) Nucleoporin NUP153 guards genome integrity by promoting nuclear import of 53BP1. Cell Death Diff. , 19, 798-807.
12. Ritzerfeld, J. et al. (2011) Phenotypic profiling of the human genome reveals gene products involved in plasma membrane targeting of Src kinases. Genome Res. , 21, 1955-1968.
13. Rohn, J. L. et al. (2011) Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype. J Cell Biol. , 194, 789-805.
14. Schmidt, E. E. et al. (2013) GenomeRNAi: A database for cell-based and in vivo RNAi phenotypes. Nucleic Acids Res. , 41, D1021-D1026.
15. Schmitz, M. H. et al. (2010) Live-cell imaging RNAi screen identifies PP2AB55a and importin-1b as key mitotic exit regulators in human cells. Nat. Cell Biol. , 12, 886-893.
16. Simpson, J. C. et al. (2012) Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway. Nat. Cell Biol. , 14, 764-774.
17. Stein, L. (2013) Creating databases for biological information: An introduction. Curr. Protoc. Bioinf. , 9, Unit9. 1.