High-Resolution Correlative Microscopy: Bridging the Gap between Single Molecule Localization Microscopy and Atomic Force Microscopy

Nano Letters

Volumn 15, Issue 8, 2015, Pages 4896-4904

  Odermatt, Pascal D ^a   Shivanandan, Arun ^a   Deschout, Hendrik ^a   Jankele, Radek ^a   Nievergelt, Adrian P ^a   Feletti, Lely ^a   Davidson, Michael W ^b   Radenovic, Aleksandra ^a   Fantner, Georg E ^a  

^a EPFL   (Switzerland)

^b FLORIDA STATE UNIVERSITY   (United States)

Author keywords

Atomic force microscopy (AFM); correlative imaging; direct stochastic optical reconstruction microscopy (dSTORM); live cell imaging; photoactivated localization microscopy (PALM); single molecule localization microscopy (SMLM)

Indexed keywords

CELLS; CYTOLOGY; IMAGE PROCESSING; IMAGE RECONSTRUCTION; MAMMALS; MOLECULAR BIOLOGY; MOLECULES; NANOTECHNOLOGY; PROTEINS; STOCHASTIC SYSTEMS;

BIOLOGICAL STRUCTURES; CORRELATIVE MICROSCOPIES; CYTOSKELETAL FILAMENTS; LIVE-CELL IMAGING; NANOSCALE CHARACTERIZATION; OPTICAL RECONSTRUCTION; PHOTO-ACTIVATED; SINGLE-MOLECULE LOCALIZATIONS;

ATOMIC FORCE MICROSCOPY;

EID: 84939230206     PISSN: 15306984     EISSN: 15306992     Source Type: Journal    
DOI: 10.1021/acs.nanolett.5b00572     Document Type: Article

References (45)

1. Henderson, E.; Haydon, P. G.; Sakaguchi, D. S. Science 1992, 257 (5078) 1944 10.1126/science.1411511
2. Dufrene, Y. F.; Boonaert, C. J. P.; Gerin, P. A.; Asther, M.; Rouxhet, P. G. J. Bacteriol. 1999, 181 (17) 5350
3. Rotsch, C.; Braet, F.; Wisse, E.; Radmacher, M. Cell Biol. Int. 1997, 21 (11) 685-696 10.1006/cbir.1997.0213
4. Kodera, N.; Yamamoto, D.; Ishikawa, R.; Ando, T. Nature 2010, 468 (7320) 72-76 10.1038/nature09450
5. Ando, T. Nanotechnology 2012, 23 (6) 062001 10.1088/0957-4484/23/6/062001
6. Betzig, E.; Patterson, G. H.; Sougrat, R.; Lindwasser, O. W.; Olenych, S.; Bonifacino, J. S.; Davidson, M. W.; Lippincott-Schwartz, J.; Hess, H. F. Science 2006, 313 (5793) 1642-1645 10.1126/science.1127344
7. Hess, S. T.; Girirajan, T. P.; Mason, M. D. Biophys. J. 2006, 91 (11) 4258-72 10.1529/biophysj.106.091116
8. Rust, M. J.; Bates, M.; Zhuang, X. Nat. Methods 2006, 3 (10) 793-5 10.1038/nmeth929
9. Xu, K.; Zhong, G. S.; Zhuang, X. W. Science 2013, 339 (6118) 452-456 10.1126/science.1232251
10. Szymborska, A.; de Marco, A.; Daigle, N.; Cordes, V. C.; Briggs, J. A. G.; Ellenberg, J. Science 2013, 341 (6146) 655-658 10.1126/science.1240672
11. Shroff, H.; Galbraith, C. G.; Galbraith, J. A.; Betzig, E. Nat. Methods 2008, 5 (5) 417-423 10.1038/nmeth.1202
12. Annibale, P.; Vanni, S.; Scarselli, M.; Rothlisberger, U.; Radenovic, A. PLoS One 2011, 6 (7) e22678 10.1371/journal.pone.0022678
13. Annibale, P.; Scarselli, M.; Greco, M.; Radenovic, A. Optical Nanoscopy 2012, 1 (1) 9 10.1186/2192-2853-1-9
14. Durisic, N.; Laparra-Cuervo, L.; Sandoval-Alvarez, A.; Borbely, J. S.; Lakadamyali, M. Nat. Methods 2014, 11 (2) 156-162 10.1038/nmeth.2784
15. Nieuwenhuizen, R. P.; Lidke, K. A.; Bates, M.; Puig, D. L.; Grunwald, D.; Stallinga, S.; Rieger, B. Nat. Methods 2013, 10 (6) 557-62 10.1038/nmeth.2448
16. Chang, Y. W.; Chen, S. Y.; Tocheva, E. I.; Treuner-Lange, A.; Loebach, S.; Sogaard-Andersen, L.; Jensen, G. J. Nat. Methods 2014, 11 (7) 737-739 10.1038/nmeth.2961
17. Kopek, B. G.; Shtengel, G.; Grimm, J. B.; Clayton, D. A.; Hess, H. F. PLoS One 2013, 8 (10) e77209 10.1371/journal.pone.0077209
18. Monserrate, A.; Casado, S.; Flors, C. ChemPhysChem 2014, 15 (4) 647-50 10.1002/cphc.201300853
19. Muller, D. J.; Schabert, F. A.; Buldt, G.; Engel, A. Biophys. J. 1995, 68 (5) 1681-6 10.1016/S0006-3495(95)80345-0
20. Chacko, J. V.; Zanacchi, F. C.; Diaspro, A. Cytoskeleton 2013, 70 (11) 729-40 10.1002/cm.21139
21. Heilemann, M.; van de Linde, S.; Schuttpelz, M.; Kasper, R.; Seefeldt, B.; Mukherjee, A.; Tinnefeld, P.; Sauer, M. Angew. Chem., Int. Ed. 2008, 47 (33) 6172-6176 10.1002/anie.200802376
22. Schmitz, S.; Schaap, I. A.; Kleinjung, J.; Harder, S.; Grainger, M.; Calder, L.; Rosenthal, P. B.; Holder, A. A.; Veigel, C. J. Biol. Chem. 2010, 285 (47) 36577-85 10.1074/jbc.M110.142638
23. Metcalf, D. J.; Edwards, R.; Kumarswami, N.; Knight, A. E. J. Visualized Exp. 2013, 10.3791/50579
24. Xu, K.; Babcock, H. P.; Zhuang, X. W. Nat. Methods 2012, 9 (2) 185-188 10.1038/nmeth.1841
25. Dominguez, R.; Holmes, K. C. Annu. Rev. Biophys. 2011, 40 (1) 169-186 10.1146/annurev-biophys-042910-155359
26. Dempsey, G. T.; Vaughan, J. C.; Chen, K. H.; Bates, M.; Zhuang, X. W. Nat. Methods 2011, 8 (12) 1027-1036 10.1038/nmeth.1768
27. Ikawa, T.; Hoshino, F.; Watanabe, O.; Li, Y. L.; Pincus, P.; Safinya, C. R. Phys. Rev. Lett. 2007, 98 (1) 018101 10.1103/PhysRevLett.98.018101
28. York, A. G.; Ghitani, A.; Vaziri, A.; Davidson, M. W.; Shroff, H. Nat. Methods 2011, 8 (4) 327-333 10.1038/nmeth.1571
29. Huang, B.; Wang, W. Q.; Bates, M.; Zhuang, X. W. Science 2008, 319 (5864) 810-813 10.1126/science.1153529
30. Pavani, S. R. P.; Thompson, M. A.; Biteen, J. S.; Lord, S. J.; Liu, N.; Twieg, R. J.; Piestun, R.; Moerner, W. E. Proc. Natl. Acad. Sci. U. S. A. 2009, 106 (9) 2995-2999 10.1073/pnas.0900245106
31. Shtengel, G.; Galbraith, J. A.; Galbraith, C. G.; Lippincott-Schwartz, J.; Gillette, J. M.; Manley, S.; Sougrat, R.; Waterman, C. M.; Kanchanawong, P.; Davidson, M. W.; Fetter, R. D.; Hess, H. F. Proc. Natl. Acad. Sci. U. S. A. 2009, 106 (9) 3125-3130 10.1073/pnas.0813131106
32. Abrahamsson, S.; Chen, J. J.; Hajj, B.; Stallinga, S.; Katsov, A. Y.; Wisniewski, J.; Mizuguchi, G.; Soule, P.; Mueller, F.; Darzacq, C. D.; Darzacq, X.; Wu, C.; Bargmann, C. I.; Agard, D. A.; Dahan, M.; Gustafsson, M. G. L. Nat. Methods 2013, 10 (1) 60-63 10.1038/nmeth.2277
33. Rotsch, C.; Jacobson, K.; Radmacher, M. Proc. Natl. Acad. Sci. U. S. A. 1999, 96 (3) 921-926 10.1073/pnas.96.3.921
34. Colom, A.; Casuso, I.; Rico, F.; Scheuring, S. Nat. Commun. 2013, 4, 4 10.1038/ncomms3155
35. Dufrene, Y. F.; Martinez-Martin, D.; Medalsy, I.; Alsteens, D.; Muller, D. J. Nat. Methods 2013, 10 (9) 847-854 10.1038/nmeth.2602
36. Shim, S. H.; Xia, C. L.; Zhong, G. S.; Babcock, H. P.; Vaughan, J. C.; Huang, B.; Wang, X.; Xu, C.; Bi, G. Q.; Zhuang, X. W. Proc. Natl. Acad. Sci. U. S. A. 2012, 109 (35) 13978-13983 10.1073/pnas.1201882109
37. Jones, S. A.; Shim, S.-H.; He, J.; Zhuang, X. Nat. Methods 2011, 8 (6) 499-505 10.1038/nmeth.1605
38. Slade, A.; Minne, S. C. Microsc. Microanal. 2014, 20 (SupplementS3) 2074-2075 10.1017/S1431927614012100
39. Ingber, D. E. FASEB J. 2006, 20 (7) 811-827 10.1096/fj.05-5424rev
40. Wang, Y. X.; Shyy, J. Y. J.; Chien, S. Annu. Rev. Biomed. Eng. 2008, 10, 1-38 10.1146/annurev.bioeng.010308.161731
41. Endesfelder, U.; Finan, K.; Holden, S. J.; Cook, P. R.; Kapanidis, A. N.; Heilemann, M. Biophys. J. 2013, 105, 172 10.1016/j.bpj.2013.05.048
42. Olivier, N.; Keller, D.; Gonczy, P.; Manley, S. PLoS One 2013, 8 (7) e69004 10.1371/journal.pone.0069004
43. Mortensen, K. I.; Churchman, L. S.; Spudich, J. A.; Flyvbjerg, H. Nat. Methods 2010, 7 (5) 377-U59 10.1038/nmeth.1447
44. Janesick, J. R. Scientific charge-coupled devices. In pie Press Monograph; SPIE Publications: Bellingham, WA, 2007.
45. Ovesny, M.; Krizek, P.; Borkovec, J.; Svindrych, Z. K.; Hagen, G. M. Bioinformatics 2014, 30 (16) 2389-2390 10.1093/bioinformatics/btu202