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Volumn 16, Issue 1, 2015, Pages

Most partial domains in proteins are alignment and annotation artifacts

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDES AND PROTEINS; PFAM PROTEIN; PFAM27 PROTEIN; PFAMA PROTEIN; UNCLASSIFIED DRUG; PROTEIN;

EID: 84939207424     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-015-0656-7     Document Type: Article
Times cited : (27)

References (22)
  • 1
    • 0021215312 scopus 로고
    • Domain map of the LDL receptor: sequence homology with the epidermal growth factor precursor
    • Russell DW, Schneider WJ, Yamamoto T, Luskey L, Brown MS, Goldstein JL. Domain map of the LDL receptor: sequence homology with the epidermal growth factor precursor. Cell. 1984; 37:577-85.
    • (1984) Cell , vol.37 , pp. 577-585
    • Russell, D.W.1    Schneider, W.J.2    Yamamoto, T.3    Luskey, L.4    Brown, M.S.5    Goldstein, J.L.6
  • 2
    • 0022259920 scopus 로고
    • The LDL receptor gene: a mosaic of exons shared with different proteins
    • Sudhof TC, Goldstein JL, Brown MS, Russell DW. The LDL receptor gene: a mosaic of exons shared with different proteins. Science. 1985; 228:815-22.
    • (1985) Science , vol.228 , pp. 815-822
    • Sudhof, T.C.1    Goldstein, J.L.2    Brown, M.S.3    Russell, D.W.4
  • 5
    • 48249113702 scopus 로고    scopus 로고
    • Predicting protein function from domain content,
    • Forslund K, Sonnhammer ELL. Predicting protein function from domain content,. Bioinformatics. 2008; 24:1681-7.
    • (2008) Bioinformatics , vol.24 , pp. 1681-1687
    • Forslund, K.1    Sonnhammer, E.L.L.2
  • 6
    • 77956545743 scopus 로고    scopus 로고
    • RefProtDom: a protein database with improved domain boundaries and homology relationships
    • Gonzalez MW, Pearson WR. RefProtDom: a protein database with improved domain boundaries and homology relationships. Bioinformatics. 2010; 26:2361.
    • (2010) Bioinformatics , vol.26 , pp. 2361
    • Gonzalez, M.W.1    Pearson, W.R.2
  • 8
    • 84868027251 scopus 로고    scopus 로고
    • Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB
    • Xu Q, Dunbrack Jr RL. Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB. Bioinformatics. 2012; 28:2763-72.
    • (2012) Bioinformatics , vol.28 , pp. 2763-2772
    • Xu, Q.1    Dunbrack Jr, R.L.2
  • 9
    • 52449084495 scopus 로고    scopus 로고
    • Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
    • Nagy A, Hegyi H, Farkas K, Tordai H, Kozma E, Bányai L, et al. Identification and correction of abnormal, incomplete and mispredicted proteins in public databases. BMC Bioinformatics. 2008; 9:353.
    • (2008) BMC Bioinformatics , vol.9 , pp. 353
    • Nagy, A.1    Hegyi, H.2    Farkas, K.3    Tordai, H.4    Kozma, E.5    Bányai, L.6
  • 11
    • 84890079059 scopus 로고    scopus 로고
    • Adjusting scoring matrices to correct overextended alignments
    • Mills LJ, Pearson WR. Adjusting scoring matrices to correct overextended alignments. Bioinformatics. 2013; 29:3007-13.
    • (2013) Bioinformatics , vol.29 , pp. 3007-3013
    • Mills, L.J.1    Pearson, W.R.2
  • 13
    • 84939183845 scopus 로고    scopus 로고
    • UniProt. What is the canonical sequence?
    • UniProt. What is the canonical sequence? Are all isoforms described in one entry? www.uniprot.org/faq/30 .
    • Are all isoforms described in one entry
  • 14
    • 84876578144 scopus 로고    scopus 로고
    • New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
    • Sillitoe I, Cuff AL, Dessailly BH, Dawson NL, Furnham N, Lee D, et al. New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Nucleic Acids Res. 2013; 41:490-8.
    • (2013) Nucleic Acids Res , vol.41 , pp. 490-498
    • Sillitoe, I.1    Cuff, A.L.2    Dessailly, B.H.3    Dawson, N.L.4    Furnham, N.5    Lee, D.6
  • 17
    • 84879147679 scopus 로고    scopus 로고
    • The impact of splicing on protein domain architecture,
    • Light S, Elofsson A. The impact of splicing on protein domain architecture,. Curr Op Struct Biol. 2013; 23:451-8.
    • (2013) Curr Op Struct Biol , vol.23 , pp. 451-458
    • Light, S.1    Elofsson, A.2
  • 18
    • 84939160343 scopus 로고    scopus 로고
    • Domain atrophy creates rare cases of functional partial protein domains
    • Prakash A, Bateman A. Domain atrophy creates rare cases of functional partial protein domains. Genome Biol. 2015; 16:88.
    • (2015) Genome Biol , vol.16 , pp. 88
    • Prakash, A.1    Bateman, A.2
  • 19
    • 84891783174 scopus 로고    scopus 로고
    • UniProt Consortium: Activities at the universal protein resource (UniProt)
    • UniProt Consortium: Activities at the universal protein resource (UniProt). Nucleic Acids Res. 2014; 42:191-8.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 191-198
  • 20
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
    • Pearson WR. Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genomics. 1991; 11:635-50.
    • (1991) Genomics , vol.11 , pp. 635-650
    • Pearson, W.R.1
  • 21
    • 84939126427 scopus 로고    scopus 로고
    • FASTA sequence comparison at the University of Virginia
    • FASTA sequence comparison at the University of Virginia. fasta.bioch.virginia.edu/fasta_www2 .


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.