Parallel tools for simulating the depolarization block on a neural model

Procedia Computer Science

Volumn 51, Issue 1, 2015, Pages 745-754

  Cuomo, Salvatore ^a   De Michele, Pasquale ^b   Galletti, Ardelio ^c   Ponti, Giovanni ^b  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b ENEA CR Portici   (Italy)

^c UNIVERSITY OF NAPLES PARTHENOPE   (Italy)

Author keywords

Computational neuroscience; Multi core computing; Parallel computing

Indexed keywords

DEPOLARIZATION; PARALLEL PROCESSING SYSTEMS;

BIOLOGICAL MODELS; COMPUTATIONAL CODES; COMPUTATIONAL NEUROSCIENCE; COMPUTATIONAL RESOURCES; DISTRIBUTED ARCHITECTURE; HIGH PERFORMANCE COMPUTING; MULTI-CORE COMPUTING; PORTABLE BUILDINGS;

COMPUTATION THEORY;

EID: 84939129403     PISSN: None     EISSN: 18770509     Source Type: Conference Proceeding    
DOI: 10.1016/j.procs.2015.05.194     Document Type: Conference Paper

References (18)

1. P. Andersen, R. Morris, D. Amaral, T. Bliss, and J. O'Keede. The Hippocampus Book. Oxford: University Press, 2007.
2. D. Bianchi, P. De Michele, C. Marchetti, B. Tirozzi, S. Cuomo, H. Marie, and M. Migliore. Effects of increasing creb-dependent transcription on the storage and recall processes in a hippocampal ca1 microcircuit. Hippocampus, 24(2):165-177, 2014.
3. D. Bianchi, A. Marasco, A. Limongiello, C. Marchetti, H. Marie, B. Tirozzi, and M. Migliore. On the mechanisms underlying the depolarization block in the spiking dynamics of ca1 pyramidal neurons. J. Comput. Neurosc., 33(2):207-225, 2012.
4. Salvatore Cuomo, Pasquale De Michele, and Francesco Piccialli. A performance evaluation of a parallel biological network microcircuit in neuron. International Journal of Distributed and Parallel System, 2013.
5. H. Eichenbaum, P. Dunchenko, E. Wood, M. Shapiro, and H. Tanila. The hippocampus, memory and place cells: Is it spatial memory or a memory of space? NEURON, 23:209-226, 1999.
6. M. L. Hines and N. T. Carnevale. The neuron simulation environment. Neural Computation, 9:1179-1209, 1997.
7. M. L. Hines and N. T. Carnevale. The Handbook of Brain Theory and Neural Networks, 2nd ed., chapter The NEURON simulation environment, pages 769-773. MIT Press. Cambridge, 2003.
8. M. L. Hines, H. Markram, and F. Schurmann. Fully implicit parallel simulation of single neurons. J Comput Neurosci, 25(3):439-448, 2008.
9. James M. Bower, David Beeman, et al. The Book of GENESIS. Internet Edition, 2003.
10. Haojie Mao, Benjamin S Elkin, Vinay V Genthikatti, Barclay Morrison III, and King H Yang. Why is ca3 more vulnerable than ca1 in experimental models of controlled cortical impact-induced brain injury? Journal of neurotrauma, 30(17):1521-1530, 2013.
11. M. Migliore and G. M. Shepherd. Emerging rules for the distributions of active dendritic conductances. Nat Rev Neurosci, 3(5):362-370, 2002.
12. M. Migliore and G. M. Shepherd. Functional significance of axonal kv7 channels in hippocampal pyramidal neurons. Nat Rev Neurosci, 6(10):810-818, 2005.
13. P. Poirazi et al. Pyramidal Neuron as Two-Layer Neural Network. Neuron, 37:989-999, 2003.
14. W. Rall. Branching dendritic trees and motoneuron membrane resistivity. Exp. Neurol., 1:491-527, 1959.
15. W. Rall. Theory and physiological properties of dendrites. Ann. N. Y. Acad. Sci., 96:1071-1092, 1962.
16. M. M. Shah, M. Migliore, I. Valencia, E. C. Cooper, and D. A. Brown. Functional significance of axonal kv7 channels in hippocampal pyramidal neurons. P Natl Acad Sci USA, 105:7869-7874, 2008.
17. E. N. Warman, D. M. Durand, and G. L. Yuen. Reconstruction of hippocampal ca1 pyramidal cell electrophysiology by computer simulation. Journal of Neurophysiology, 71(6):2033-2045, 1994.
18. E. Wood, P. Dunchenko, and H. Eichenbaum. The global record of memory in hippocampal neuronal activity. NATURE, 397:613-616, 1999.