Evaluation of four commercial multiplex molecular tests for the diagnosis of acute respiratory infections

PLoS ONE

Volumn 10, Issue 6, 2015, Pages

  Salez, Nicolas ^a   Vabret, Astrid ^b   Leruez Ville, Marianne ^c   Andreoletti, Laurent ^d   Carrat, Fabrice ^e,f   Renois, Fanny ^d   De Lamballerie, Xavier ^a,g  

^a Aix Marseille University IRD 190 Inserm 1207   (France)

^b CAEN UNIVERSITY HOSPITAL   (France)

^c HÔPITAL NECKER ENFANTS MALADES   (France)

^d REIMS UNIVERSITY HOSPITAL   (France)

^e INSERM   (France)

^f HÔPITAL SAINT ANTOINE   (France)

^g AIX MARSEILLE UNIVERSITY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOVIRUS INFECTION; ADOLESCENT; ADULT; AGED; ARTICLE; BACTERIUM DETECTION; BOCAVIRUS INFECTION; CHILD; COMPARATIVE STUDY; CONTROLLED STUDY; CORONAVIRUS INFECTION; DIAGNOSTIC TEST ACCURACY STUDY; ENTEROVIRUS INFECTION; HUMAN; HUMAN METAPNEUMOVIRUS INFECTION; INFANT; INFLUENZA A; INFLUENZA B; LIMIT OF DETECTION; MAJOR CLINICAL STUDY; MIXED INFECTION; MOLECULAR DIAGNOSIS; MOLECULAR DIAGNOSTICS; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; NOSE SMEAR; PARAINFLUENZA VIRUS INFECTION; POLYMERASE CHAIN REACTION SYSTEM; PREDICTIVE VALUE; RESPIRATORY SYNCYTIAL VIRUS INFECTION; RESPIRATORY TRACT INFECTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHINOVIRUS INFECTION; SENSITIVITY AND SPECIFICITY; THROAT CULTURE; VIRUS DETECTION; YOUDEN INDEX; ACUTE DISEASE; ADENOVIRIDAE; CORONAVIRIDAE; CYTOMEGALOVIRUS; DIAGNOSTIC KIT; ENTEROVIRUS; GENETICS; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; HUMAN BOCAVIRUS; HUMAN RESPIRATORY SYNCYTIAL VIRUS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MIDDLE AGED; ORTHOMYXOVIRIDAE; PARECHOVIRUS; PRESCHOOL CHILD; RESPIRATORY TRACT INFECTIONS; RESPIROVIRUS; RHINOVIRUS; STANDARDS; VIROLOGY;

DIAGNOSTIC KIT;

ACUTE DISEASE; ADENOVIRIDAE; ADOLESCENT; ADULT; AGED; CHILD; CHILD, PRESCHOOL; CORONAVIRUS; CYTOMEGALOVIRUS; ENTEROVIRUS; GRAM-NEGATIVE BACTERIA; GRAM-POSITIVE BACTERIA; HUMAN BOCAVIRUS; HUMANS; INFANT; MIDDLE AGED; MULTIPLEX POLYMERASE CHAIN REACTION; ORTHOMYXOVIRIDAE; PARECHOVIRUS; REAGENT KITS, DIAGNOSTIC; RESPIRATORY SYNCYTIAL VIRUSES; RESPIRATORY TRACT INFECTIONS; RESPIROVIRUS; RHINOVIRUS;

EID: 84939127081     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0130378     Document Type: Article

References (28)

1. Verani JR, McCracken J, Arvelo W, Estevez A, Lopez MR, Reyes L, et al. Surveillance for hospitalized acute respiratory infection in Guatemala. PLoS One. 2013; 8(12): e83600. Epub 2014/01/07. PONE-D-13-24234 [pii]. doi:10.1371/journal.pone.0083600 PMID: 24391792 PubMed Central PMCID: PMC3877070.
2. Raymaekers M, de Rijke B, Pauli I, Van den Abeele AM, Cartuyvels R. Timely diagnosis of respiratory tract infections: evaluation of the performance of the Respifinder assay compared to the xTAG respiratory viral panel assay. J Clin Virol. 2011; 52(4): 314-6. Epub 2011/09/20. doi:S1386-6532(11)00344-1 [pii] doi:10.1016/j.jcv.2011.08.017 PMID: 21925937.
3. Gonzales R, Malone DC, Maselli JH, Sande MA. Excessive antibiotic use for acute respiratory infections in the United States. Clin Infect Dis. 2001; 33(6): 757-62. Epub 2001/08/21. CID001457 [pii] doi:10.1086/322627 PMID: 11512079.
4. Fox JD. Respiratory virus surveillance and outbreak investigation. J Clin Virol. 2007; 40 Suppl 1: S24-30. Epub 2008/01/31. doi:S1386-6532(07)70006-9 [pii] doi:10.1016/S1386-6532(07)70006-9 PMID: 18162251.
5. Loeffelholz MJ, Pong DL, Pyles RB, Xiong Y, Miller AL, Bufton KK, et al. Comparison of the FilmArray Respiratory Panel and Prodesse real-Time PCR assays for detection of respiratory pathogens. J Clin Microbiol. 2011; 49(12): 4083-8. Epub 2011/10/15. doi:JCM.05010-11 [pii] doi:10.1128/JCM.05010-11 PMID: 21998418; PubMed Central PMCID: PMC3232999.
6. Bulla A, Hitze KL. Acute respiratory infections: a review. Bull World Health Organ. 1978; 56(3): 481-98. Epub 1978/01/01. PMID: 308414; PubMed Central PMCID: PMC2395579.
7. Babady NE, Mead P, Stiles J, Brennan C, Li H, Shuptar S, et al. Comparison of the Luminex xTAG RVP Fast assay and the Idaho Technology FilmArray RP assay for detection of respiratory viruses in pediatric patients at a cancer hospital. J Clin Microbiol. 2012; 50(7): 2282-8. Epub 2012/04/21. doi:JCM.06186-11 [pii] doi:10.1128/JCM.06186-11 PMID: 22518855; PubMed Central PMCID: PMC3405573.
8. Welch DF, Ginocchio CC. Role of rapid immunochromatographic antigen testing in diagnosis of influenza A virus 2009 H1N1 infection. J Clin Microbiol. 2010; 48(1): 22-5. Epub 2009/12/17. doi:10.1128/JCM.02268-09 PMID: 20007399; PubMed Central PMCID: PMC2812308.
9. Dabisch-Ruthe M, Vollmer T, Adams O, Knabbe C, Dreier J. Comparison of three multiplex PCR assays for the detection of respiratory viral infections: evaluation of xTAG respiratory virus panel fast assay, RespiFinder 19 assay and RespiFinder SMART 22 assay. BMC Infect Dis. 2012; 12: 163. Epub 2012/07/26. doi:1471-2334-12-163 [pii] doi:10.1186/1471-2334-12-163 PMID: 22828244; PubMed Central PMCID: PMC3519643.
10. Perez-Ruiz M, Pedrosa-Corral I, Sanbonmatsu-Gamez S, Navarro-Mari M. Laboratory detection of respiratory viruses by automated techniques. Open Virol J. 2012; 6: 151-9. Epub 2012/12/19. doi:10. 2174/1874357901206010151 TOVJ-6-151 [pii]. PMID: 23248735; PubMed Central PMCID: PMC3522051.
11. Renaud C, Crowley J, Jerome KR, Kuypers J. Comparison of FilmArray Respiratory Panel and laboratory-developed real-Time reverse transcription-polymerase chain reaction assays for respiratory virus detection. Diagn Microbiol Infect Dis. 2012; 74(4): 379-83. Epub 2012/09/18. doi:S0732-8893(12) 00332-X [pii] doi:10.1016/j.diagmicrobio.2012.08.003 PMID: 22981482.
12. Fox JD. Nucleic acid amplification tests for detection of respiratory viruses. J Clin Virol. 2007; 40 Suppl 1: S15-23. Epub 2008/01/31. doi:S1386-6532(07)70005-7 [pii] doi:10.1016/S1386-6532(07)70005-7 PMID: 18162249.
13. Sakthivel SK, Whitaker B, Lu X, Oliveira DB, Stockman LJ, Kamili S, et al. Comparison of fast-Track diagnostics respiratory pathogens multiplex real-Time RT-PCR assay with in-house singleplex assays for comprehensive detection of human respiratory viruses. J Virol Methods. 2012; 185(2): 259-66. Epub 2012/07/17. doi:S0166-0934(12)00250-9 [pii] doi:10.1016/j.jviromet.2012.07.010 PMID: 22796035.
14. Gadsby NJ, Hardie A, Claas EC, Templeton KE. Comparison of the Luminex Respiratory Virus Panel fast assay with in-house real-Time PCR for respiratory viral infection diagnosis. J Clin Microbiol. 2010; 48(6): 2213-6. Epub 2010/04/02. doi:JCM.02446-09 [pii] doi:10.1128/JCM.02446-09 PMID: 20357215; PubMed Central PMCID: PMC2884497.
15. Popowitch EB, O'Neill SS, Miller MB. Comparison of the Biofire FilmArray RP, Genmark eSensor RVP, Luminex xTAG RVPv1, and Luminex xTAG RVP fast multiplex assays for detection of respiratory viruses. J Clin Microbiol. 2013; 51(5): 1528-33. Epub 2013/03/15. doi:JCM.03368-12 [pii] doi:10.1128/JCM.03368-12 PMID: 23486707; PubMed Central PMCID: PMC3647947.
16. Anderson TP, Werno AM, Barratt K, Mahagamasekera P, Murdoch DR, Jennings LC. Comparison of four multiplex PCR assays for the detection of viral pathogens in respiratory specimens. J Virol Methods. 2013; 191(2): 118-21. Epub 2013/04/16. doi:S0166-0934(13)00109-2 [pii] doi:10.1016/j.jviromet. 2013.04.005 PMID: 23583489.
17. Pillet S, Lardeux M, Dina J, Grattard F, Verhoeven P, Le Goff J, et al. Comparative evaluation of six commercialized multiplex PCR kits for the diagnosis of respiratory infections. PLoS One. 2013; 8(8): e72174. Epub 2013/09/24. doi:10.1371/journal.pone.0072174 PMID: 24058410; PubMed Central PMCID: PMC3751960.
18. Lapidus N, de Lamballerie X, Salez N, Setbon M, Ferrari P, Delabre RM, et al. Integrative study of pandemic A/H1N1 influenza infections: design and methods of the CoPanFlu-France cohort. BMC Public Health. 2012; 12: 417. Epub 2012/06/09. doi:10.1186/1471-2458-12-417 PMID: 22676272; PubMed Central PMCID: PMC3461458.
19. Pabbaraju K, Wong S, Tokaryk KL, Fonseca K, Drews SJ. Comparison of the Luminex xTAG respiratory viral panel with xTAG respiratory viral panel fast for diagnosis of respiratory virus infections. J Clin Microbiol. 2011; 49(5): 1738-44. Epub 2011/03/18. doi:JCM.02090-10 [pii] doi:10.1128/JCM.02090-10 PMID: 21411570; PubMed Central PMCID: PMC3122679.
20. Merante F, Yaghoubian S, Janeczko R. Principles of the xTAG respiratory viral panel assay (RVP Assay). J Clin Virol. 2007; 40 Suppl 1: S31-5. Epub 2008/01/31. doi:S1386-6532(07)70007-0 [pii] doi:10.1016/S1386-6532(07)70007-0 PMID: 18162252.
21. van Elden LJ, Nijhuis M, Schipper P, Schuurman R, van Loon AM. Simultaneous detection of influenza viruses A and B using real-Time quantitative PCR. J Clin Microbiol. 2001; 39(1): 196-200. Epub 2001/01/04. doi:10.1128/JCM.39.1.196-200.2001 PMID: 11136770; PubMed Central PMCID: PMC87701.
22. Huguenin A, Moutte L, Renois F, Leveque N, Talmud D, Abely M, et al. Broad respiratory virus detection in infants hospitalized for bronchiolitis by use of a multiplex RT-PCR DNA microarray system. J Med Virol. 2012; 84(6): 979-85. Epub 2012/04/14. doi:10.1002/jmv.23272 PMID: 22499022.
23. Jokela P, Piiparinen H, Mannonen L, Auvinen E, Lappalainen M. Performance of the Luminex xTAG Respiratory Viral Panel Fast in a clinical laboratory setting. J Virol Methods. 2012; 182(1-2): 82-6. Epub 2012/04/03. doi:S0166-0934(12)00083-3 [pii] doi:10.1016/j.jviromet.2012.03.015 PMID: 22465255.
24. Balada-Llasat JM, LaRue H, Kelly C, Rigali L, Pancholi P. Evaluation of commercial ResPlex II v2.0, MultiCode-PLx, and xTAG respiratory viral panels for the diagnosis of respiratory viral infections in adults. J Clin Virol. 2011; 50(1): 42-5. Epub 2010/11/06. doi:S1386-6532(10)00406-3 [pii] doi:10.1016/j.jcv.2010.09.022 PMID: 21050809.
25. Gharabaghi F, Hawan A, Drews SJ, Richardson SE. Evaluation of multiple commercial molecular and conventional diagnostic assays for the detection of respiratory viruses in children. Clin Microbiol Infect. 2011; 17(12): 1900-6. Epub 2011/06/29. doi:10.1111/j.1469-0691.2011.03529.x PMID: 21707834.
26. Bruijnesteijn van Coppenraet LE, Swanink CM, van Zwet AA, Nijhuis RH, Schirm J, Wallinga JA, et al. Comparison of two commercial molecular assays for simultaneous detection of respiratory viruses in clinical samples using two automatic electrophoresis detection systems. J Virol Methods. 2010; 169 (1): 188-92. Epub 2010/08/10. doi:S0166-0934(10)00274-0 [pii] doi:10.1016/j.jviromet.2010.07.032 PMID: 20691735.
27. Loens K, van Loon AM, Coenjaerts F, van Aarle Y, Goossens H, Wallace P, et al. Performance of different mono-And multiplex nucleic acid amplification tests on a multipathogen external quality assessment panel. J Clin Microbiol. 2012; 50(3): 977-87. Epub 2011/12/16. doi:JCM.00200-11 [pii] doi:10. 1128/JCM.00200-11 PMID: 22170925; PubMed Central PMCID: PMC3295136.
28. Rand KH, Rampersaud H, Houck HJ. Comparison of two multiplex methods for detection of respiratory viruses: FilmArray RP and xTAG RVP. J Clin Microbiol. 2011; 49(7): 2449-53. Epub 2011/04/22. doi:JCM.02582-10 [pii] doi:10.1128/JCM.02582-10 PMID: 21508156; PubMed Central PMCID: PMC3147849.