Complete genome characterization of porcine epidemic diarrhea virus in Vietnam

Archives of Virology

Volumn 160, Issue 8, 2015, Pages 1931-1938

  Vui, Dam Thi ^a,b   Thanh, To Long ^b   Tung, Nguyen ^c   Srijangwad, Anchalee ^a   Tripipat, Thitima ^a   Chuanasa, Taksina ^a   Nilubol, Dachrit ^a  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b National Center for Veterinary Diagnosis   (Viet Nam)

^c Epidemiology Division Department of Animal Health   (Viet Nam)

Author keywords

[No Author keywords available]

Indexed keywords

PORCINE EPIDEMIC DIARRHEA VIRUS; SUIDAE;

ANIMAL; CLASSIFICATION; CORONAVIRUS INFECTION; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYLOGENY; PIG; PORCINE EPIDEMIC DIARRHEA VIRUS; SWINE DISEASE; VETERINARY; VIET NAM; VIROLOGY; VIRUS GENOME;

ANIMALS; CORONAVIRUS INFECTIONS; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORCINE EPIDEMIC DIARRHEA VIRUS; SWINE; SWINE DISEASES; VIETNAM;

EID: 84938996618     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-015-2463-6     Document Type: Article

References (41)

1. Debouck P, Pensaert M (1980) Experimental infection of pigs with a new porcine enteric coronavirus, CV 777. Am J Vet Res 41:219–223
2. Pensaert M, De Bouck P (1978) A new coronavirus-like particle associated with diarrhea in swine. Arch Virol 58:243–247
3. Pospischil A, Stuedli A, Kiupel M (2002) Update on porcine epidemic diarrhea. J Swine Health Prod 10:81–85
4. Chasey D, Cartwright S (1978) Virus-like particles associated with porcine epidemic diarrhoea. Res Vet Sci 25:255
5. Kocherhans R, Bridgen A, Ackermann M, Tobler K (2001) Completion of the porcine epidemic diarrhoea coronavirus (PEDV) genome sequence. Virus genes 23:137–144
6. Song D, Park B (2012) Porcine epidemic diarrhoea virus: a comprehensive review of molecular epidemiology, diagnosis, and vaccines. Virus genes 44:167–175
7. Godet M, Grosclaude J, Delmas B, Laude H (1994) Major receptor-binding and neutralization determinants are located within the same domain of the transmissible gastroenteritis virus (coronavirus) spike protein. J Virol 68:8008–8016
8. Li BX, Ge JW, Li YJ (2007) Porcine aminopeptidase N is a functional receptor for the PEDV coronavirus. Virology 365:166–172
9. Spaan W, Cavanagh D, Horzinek M (1988) Coronaviruses: structure and genome expression. J Gen Virol 69:2939–2952
10. Chang SH, Bae JL, Kang TJ, Kim J, Chung GH, Lim CW, Laude H, Yang MS, Jang YS (2002) Identification of the epitope region capable of inducing neutralizing antibodies against the porcine epidemic diarrhea virus. Mol Cells 14:295–299
11. Cruz DJ, Kim CJ, Shin HJ (2006) Phage-displayed peptides having antigenic similarities with porcine epidemic diarrhea virus (PEDV) neutralizing epitopes. Virology 354:28–34
12. Cruz DJ, Kim CJ, Shin HJ (2008) The GPRLQPY motif located at the carboxy-terminal of the spike protein induces antibodies that neutralize Porcine epidemic diarrhea virus. Virus Res 132:192–196
13. Sun D, Feng L, Shi H, Chen J, Cui X, Chen H, Liu S, Tong Y, Wang Y, Tong G (2008) Identification of two novel B cell epitopes on porcine epidemic diarrhea virus spike protein. Vet Microbiol 131:73–81
14. Lee DK, Park CK, Kim SH, Lee C (2010) Heterogeneity in spike protein genes of porcine epidemic diarrhea viruses isolated in Korea. Virus Res 149:175–182
15. Li ZL, Zhu L, Ma JY, Zhou QF, Song YH, Sun BL, Chen RA, Xie QM, Bee YZ (2012) Molecular characterization and phylogenetic analysis of porcine epidemic diarrhea virus (PEDV) field strains in south China. Virus genes 45:181–185
16. Park SJ, Moon HJ, Yang JS, Lee CS, Song DS, Kang BK, Park BK (2007) Sequence analysis of the partial spike glycoprotein gene of porcine epidemic diarrhea viruses isolated in Korea. Virus genes 35:321–332
17. Park SJ, Kim HK, Song DS, Moon HJ, Park BK (2011) Molecular characterization and phylogenetic analysis of porcine epidemic diarrhea virus (PEDV) field isolates in Korea. Arch Virol 156:577–585
18. Park SJ, Song DS, Ha GW, Park BK (2007) Cloning and further sequence analysis of the spike gene of attenuated porcine epidemic diarrhea virus DR13. Virus genes 35:55–64
19. Park SJ, Moon HJ, Luo Y, Kim HK, Kim EM, Yang JS, Song DS, Kang BK, Lee CS, Park BK (2008) Cloning and further sequence analysis of the ORF3 gene of wild- and attenuated-type porcine epidemic diarrhea viruses. Virus genes 36:95–104
20. Masters PS (2006) The molecular biology of coronaviruses. Adv Virus Res 66:193–292
21. Zhang Z, Chen J, Shi H, Chen X, Shi D, Feng L, Yang B (2012) Identification of a conserved linear B-cell epitope in the M protein of porcine epidemic diarrhea virus. J Virol 9:225
22. Egberink HF, Ederveen J, Callebaut P, Horzinek MC (1988) Characterization of the structural proteins of porcine epizootic diarrhea virus, strain CV777. AmJ Vet Res 49:1320–1324
23. Lai MM (1990) Coronavirus: organization, replication and expression of genome. Annu Rev Microbiol 44:303–333
24. Schelle B, Karl N, Ludewig B, Siddell SG, Thiel V (2005) Selective replication of coronavirus genomes that express nucleocapsid protein. J Virol 79:6620–6630
25. Takahashi K, Okada K, Ohshima K (1983) An outbreak of swine diarrhea of a new-type associated with coronavirus-like particles in Japan. Jpn J Vet Sci 45:829–832
26. Chen JF, Sun DB, Wang CB, Shi HY, Cui XC, Liu SW, Qiu HJ, Feng L (2008) Molecular characterization and phylogenetic analysis of membrane protein genes of porcine epidemic diarrhea virus isolates in China. Virus Genes 36:355–364
27. Temeeyasen G, Srijangwad A, Tripipat T, Tipsombatboon P, Piriyapongsa J, Phoolcharoen W, Chuanasa T, Tantituvanont A, Nilubol D (2013) Genetic diversity of ORF3 and spike genes of porcine epidemic diarrhea virus in Thailand. Infect Genet Evol 21c:205–213
28. Duy DT, Toan NT, Puranaveja S, Thanawongnuwech R (2013) Genetic characterization of porcine epidemic diarrhea virus (PEDV) isolates from southern Vietnam during 2009-2010 outbreaks. Thai J Vet Med 41:55–64
29. Hofmann M, Wyler R (1988) Propagation of the virus of porcine epidemic diarrhea in cell culture. J Clin Microbiol 26:2235–2239
30. Pan Y, Tian X, Li W, Zhou Q, Wang D, Bi Y, Chen F, Song Y (2012) Isolation and characterization of a variant porcine epidemic diarrhea virus in China. J Virol 9:195
31. Sambrook J, Russell DW (2006) Rapid Amplification of 5′ cDNA Ends (5′-RACE). Cold Spring Harbor Protoc. 2006:pdb.prot3989
32. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22:4673–4680
33. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Bio Evol 28:2731–2739
34. Li W, Li H, Liu Y, Pan Y, Deng F, Song Y, Tang X, He Q (2012) New variants of porcine epidemic diarrhea virus, China, 2011. Emerg Infect Dis 18:1350–1353
35. Song D, Huang D, Peng Q, Huang T, Chen Y, Zhang T, Nie X, He H, Wang P, Liu Q, Tang Y (2015) Molecular characterization and phylogenetic analysis of porcine epidemic diarrhea viruses associated with outbreaks of severe diarrhea in piglets in jiangxi, china 2013. PloS One 10:e0120310
36. Yang DQ, Ge FF, Ju HB, Wang J, Liu J, Ning K, Liu PH, Zhou JP, Sun QY (2014) Whole-genome analysis of porcine epidemic diarrhea virus (PEDV) from eastern China. Arch Virol 159:2777–2785
37. Choi JC, Lee KK, Pi JH, Park SY, Song CS, Choi IS, Lee JB, Lee DH, Lee SW (2014) Comparative genome analysis and molecular epidemiology of the reemerging porcine epidemic diarrhea virus strains isolated in Korea. Infect Genet Evol 26:348–351
38. Lin CN, Chung WB, Chang SW, Wen CC, Liu H, Chien CH, Chiou MT (2014) US-like strain of porcine epidemic diarrhea virus outbreaks in Taiwan, 2013-2014. J Vet Med Sci 76:1297–1299
39. Nilubol D, Khatiworavage C (2012) Control of porcine epidemic diarrhea virus through intestinal feedback and parity segregation system: field cases. In: IPVS, Jeju, Korea, p 222
40. Nilubol D, Khatiworavage C (2012) Comparitive efficacy of oral administration of minced piglet intestine vs intramusculor vaccination in the control porcine epidemic diarrhea in gilts. In: IPVS, Jeju, Korea, p 381
41. Sun RQ, Cai RJ, Chen YQ, Liang PS, Chen DK, Song CX (2012) Outbreak of porcine epidemic diarrhea in suckling piglets, China. Emerg Infect Dis 18:161–163