메뉴 건너뛰기




Volumn 4, Issue 4, 2015, Pages 533-540

Scaffold-fused riboregulators for enhanced gene activation in Synechocystis sp. PCC 6803

Author keywords

Hfq; Posttranscriptional gene regulation; Riboregulator; Synechocystis sp. PCC 6803; Synthetic biology

Indexed keywords

CHAPERONE; MOLECULAR SCAFFOLD; SMALL UNTRANSLATED RNA;

EID: 84938994791     PISSN: None     EISSN: 20458827     Source Type: Journal    
DOI: 10.1002/mbo3.257     Document Type: Article
Times cited : (25)

References (30)
  • 1
    • 84893904897 scopus 로고    scopus 로고
    • Engineering of a green-light inducible gene expression system in Synechocystis sp. PCC6803
    • Abe, K., K. Miyake, M. Nakamura, K. Kojima, S. Ferri, K. Ikebukuro, et al. 2014a. Engineering of a green-light inducible gene expression system in Synechocystis sp. PCC6803. Microb. Biotechnol. 7:177-183.
    • (2014) Microb. Biotechnol. , vol.7 , pp. 177-183
    • Abe, K.1    Miyake, K.2    Nakamura, M.3    Kojima, K.4    Ferri, S.5    Ikebukuro, K.6
  • 2
    • 84892525154 scopus 로고    scopus 로고
    • Design of riboregulators for control of cyanobacterial (Synechocystis) protein expression
    • Abe, K., Y. Sakai, S. Nakashima, M. Araki, W. Yoshida, K. Sode, et al. 2014b. Design of riboregulators for control of cyanobacterial (Synechocystis) protein expression. Biotechnol. Lett. 36:287-294.
    • (2014) Biotechnol. Lett. , vol.36 , pp. 287-294
    • Abe, K.1    Sakai, Y.2    Nakashima, S.3    Araki, M.4    Yoshida, W.5    Sode, K.6
  • 3
    • 0019805971 scopus 로고
    • Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas
    • Bagdasarian, M., R. Lurz, B. Ruckert, F. C. Franklin, M. M. Bagdasarian, J. Frey, et al. 1981. Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas. Gene 16:237-247.
    • (1981) Gene , vol.16 , pp. 237-247
    • Bagdasarian, M.1    Lurz, R.2    Ruckert, B.3    Franklin, F.C.4    Bagdasarian, M.M.5    Frey, J.6
  • 4
    • 67650649464 scopus 로고    scopus 로고
    • Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties
    • Bøggild, A., M. Overgaard, P. Valentin-Hansen, and D. E. Brodersen . 2009. Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties. FEBS J. 276:3904-3915.
    • (2009) FEBS J. , vol.276 , pp. 3904-3915
    • Bøggild, A.1    Overgaard, M.2    Valentin-Hansen, P.3    Brodersen, D.E.4
  • 5
    • 77957679279 scopus 로고    scopus 로고
    • Tracking, tuning, and terminating microbial physiology using synthetic riboregulators
    • Callura, J. M., D. J. Dwyer, F. J. Isaacs, C. R. Cantor, and J. J. Collins . 2010. Tracking, tuning, and terminating microbial physiology using synthetic riboregulators. Proc. Natl Acad. Sci. USA 107:15898-15903.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 15898-15903
    • Callura, J.M.1    Dwyer, D.J.2    Isaacs, F.J.3    Cantor, C.R.4    Collins, J.J.5
  • 6
    • 84893846166 scopus 로고    scopus 로고
    • Design and analysis of LacI-repressed promoters and DNA-looping in a cyanobacterium
    • Camsund, D., T. Heidorn, and P. Lindblad . 2014. Design and analysis of LacI-repressed promoters and DNA-looping in a cyanobacterium. J. Biol. Eng. 8:4.
    • (2014) J. Biol. Eng. , vol.8 , pp. 4
    • Camsund, D.1    Heidorn, T.2    Lindblad, P.3
  • 7
    • 55549101288 scopus 로고    scopus 로고
    • The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803
    • Dienst, D., U. Duhring, H. J. Mollenkopf, J. Vogel, J. Golecki, W. R. Hess, et al. 2008. The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803. Microbiology 154:3134-3143.
    • (2008) Microbiology , vol.154 , pp. 3134-3143
    • Dienst, D.1    Duhring, U.2    Mollenkopf, H.J.3    Vogel, J.4    Golecki, J.5    Hess, W.R.6
  • 9
    • 84876709042 scopus 로고    scopus 로고
    • Wide-dynamic-range promoters engineered for cyanobacteria
    • Huang, H. H., and P. Lindblad . 2013. Wide-dynamic-range promoters engineered for cyanobacteria. J. Biol. Eng. 7:10.
    • (2013) J. Biol. Eng. , vol.7 , pp. 10
    • Huang, H.H.1    Lindblad, P.2
  • 10
    • 77952492062 scopus 로고    scopus 로고
    • Design and characterization of molecular tools for a Synthetic Biology approach towards developing cyanobacterial biotechnology
    • Huang, H. H., D. Camsund, P. Lindblad, and T. Heidorn . 2010. Design and characterization of molecular tools for a Synthetic Biology approach towards developing cyanobacterial biotechnology. Nucleic Acids Res. 38:2577-2593.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2577-2593
    • Huang, H.H.1    Camsund, D.2    Lindblad, P.3    Heidorn, T.4
  • 12
    • 72049095718 scopus 로고    scopus 로고
    • Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
    • Link, T. M., P. Valentin-Hansen, and R. G. Brennan . 2009. Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc. Natl Acad. Sci. USA 106:19292-19297.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 19292-19297
    • Link, T.M.1    Valentin-Hansen, P.2    Brennan, R.G.3
  • 13
    • 0036194664 scopus 로고    scopus 로고
    • A two-component signal transduction system involved in nickel sensing in the cyanobacterium Synechocystis sp. PCC 6803
    • Lopez-Maury, L., M. Garcia-Dominguez, F. J. Florencio, and J. C. Reyes . 2002. A two-component signal transduction system involved in nickel sensing in the cyanobacterium Synechocystis sp. PCC 6803. Mol. Microbiol. 43:247-256.
    • (2002) Mol. Microbiol. , vol.43 , pp. 247-256
    • Lopez-Maury, L.1    Garcia-Dominguez, M.2    Florencio, F.J.3    Reyes, J.C.4
  • 14
    • 79955607368 scopus 로고    scopus 로고
    • Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria
    • Man, S., R. Cheng, C. Miao, Q. Gong, Y. Gu, X. Lu, et al. 2011. Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria. Nucleic Acids Res. 39:e50.
    • (2011) Nucleic Acids Res. , vol.39 , pp. e50
    • Man, S.1    Cheng, R.2    Miao, C.3    Gong, Q.4    Gu, Y.5    Lu, X.6
  • 16
    • 84873596341 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs
    • Na, D., S. M. Yoo, H. Chung, H. Park, J. H. Park, and S. Y. Lee . 2013. Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs. Nat. Biotechnol. 31:170-174.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 170-174
    • Na, D.1    Yoo, S.M.2    Chung, H.3    Park, H.4    Park, J.H.5    Lee, S.Y.6
  • 17
    • 84885929738 scopus 로고    scopus 로고
    • Theophylline-dependent riboswitch as a novel genetic tool for strict regulation of protein expression in Cyanobacterium Synechococcus elongatus PCC 7942
    • Nakahira, Y., A. Ogawa, H. Asano, T. Oyama, and Y. Tozawa . 2013. Theophylline-dependent riboswitch as a novel genetic tool for strict regulation of protein expression in Cyanobacterium Synechococcus elongatus PCC 7942. Plant Cell Physiol. 54:1724-1735.
    • (2013) Plant Cell Physiol. , vol.54 , pp. 1724-1735
    • Nakahira, Y.1    Ogawa, A.2    Asano, H.3    Oyama, T.4    Tozawa, Y.5
  • 20
    • 84885580406 scopus 로고    scopus 로고
    • Increased bioplastic production with an RNA polymerase sigma factor SigE during nitrogen starvation in Synechocystis sp. PCC 6803
    • Osanai, T., K. Numata, A. Oikawa, A. Kuwahara, H. Iijima, Y. Doi, et al. 2013. Increased bioplastic production with an RNA polymerase sigma factor SigE during nitrogen starvation in Synechocystis sp. PCC 6803. DNA Res. 20:525-535.
    • (2013) DNA Res. , vol.20 , pp. 525-535
    • Osanai, T.1    Numata, K.2    Oikawa, A.3    Kuwahara, A.4    Iijima, H.5    Doi, Y.6
  • 21
    • 84896961495 scopus 로고    scopus 로고
    • Improving the gene-regulation ability of small RNAs by scaffold engineering in Escherichia coli
    • Sakai, Y., K. Abe, S. Nakashima, W. Yoshida, S. Ferri, K. Sode, et al. 2014. Improving the gene-regulation ability of small RNAs by scaffold engineering in Escherichia coli. ACS Synth. Biol. 3:152-162.
    • (2014) ACS Synth. Biol. , vol.3 , pp. 152-162
    • Sakai, Y.1    Abe, K.2    Nakashima, S.3    Yoshida, W.4    Ferri, S.5    Sode, K.6
  • 22
    • 84867191934 scopus 로고    scopus 로고
    • Engineering artificial small RNAs for conditional gene silencing in Escherichia coli
    • Sharma, V., A. Yamamura, and Y. Yokobayashi . 2012. Engineering artificial small RNAs for conditional gene silencing in Escherichia coli. ACS Synth. Biol. 1:6-13.
    • (2012) ACS Synth. Biol. , vol.1 , pp. 6-13
    • Sharma, V.1    Yamamura, A.2    Yokobayashi, Y.3
  • 23
    • 84872401866 scopus 로고    scopus 로고
    • Knockdown of recA gene expression by artificial small RNAs in Escherichia coli
    • Sharma, V., Y. Sakai, K. A. Smythe, and Y. Yokobayashi . 2013. Knockdown of recA gene expression by artificial small RNAs in Escherichia coli. Biochem. Biophys. Res. Commun. 430:256-259.
    • (2013) Biochem. Biophys. Res. Commun. , vol.430 , pp. 256-259
    • Sharma, V.1    Sakai, Y.2    Smythe, K.A.3    Yokobayashi, Y.4
  • 24
    • 45149118469 scopus 로고    scopus 로고
    • Engineering BioBrick vectors from BioBrick parts
    • Shetty, R. P., D. Endy, and T. F. Jr. Knight . 2008. Engineering BioBrick vectors from BioBrick parts. J. Biol. Eng. 2:5.
    • (2008) J. Biol. Eng. , vol.2 , pp. 5
    • Shetty, R.P.1    Endy, D.2    Knight Jr, T.F.3
  • 25
    • 79960433506 scopus 로고    scopus 로고
    • Hfq and its constellation of RNA
    • Vogel, J., and B. F. Luisi . 2011. Hfq and its constellation of RNA. Nat. Rev. Microbiol. 9:578-589.
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 578-589
    • Vogel, J.1    Luisi, B.F.2
  • 26
    • 77957024978 scopus 로고
    • Construction of specific mutations in photosystem II photosynthetic reaction center by genetic engineering methods in Synechocystis 6803
    • Williams, J. G. K. 1988. Construction of specific mutations in photosystem II photosynthetic reaction center by genetic engineering methods in Synechocystis 6803. Methods Enzymol. 167:766-778.
    • (1988) Methods Enzymol. , vol.167 , pp. 766-778
    • Williams, J.G.K.1
  • 27
    • 84877804801 scopus 로고    scopus 로고
    • Modular optimization of multi-gene pathways for fatty acids production in E. coli
    • Xu, P., Q. Gu, W. Wang, L. Wong, A. G. Bower, C. H. Collins, et al. 2013. Modular optimization of multi-gene pathways for fatty acids production in E. coli. Nat. Commun. 4:1409.
    • (2013) Nat. Commun. , vol.4 , pp. 1409
    • Xu, P.1    Gu, Q.2    Wang, W.3    Wong, L.4    Bower, A.G.5    Collins, C.H.6
  • 28
    • 0036163624 scopus 로고    scopus 로고
    • The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs
    • Zhang, A., K. M. Wassarman, J. Ortega, A. C. Steven, and G. Storz . 2002. The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs. Mol. Cell 9:11-22.
    • (2002) Mol. Cell , vol.9 , pp. 11-22
    • Zhang, A.1    Wassarman, K.M.2    Ortega, J.3    Steven, A.C.4    Storz, G.5
  • 29
    • 84859633048 scopus 로고    scopus 로고
    • Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
    • Zhang, F., J. M. Carothers, and J. D. Keasling . 2012. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nat. Biotechnol. 30:354-359.
    • (2012) Nat. Biotechnol. , vol.30 , pp. 354-359
    • Zhang, F.1    Carothers, J.M.2    Keasling, J.D.3
  • 30
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.