-
2
-
-
0037468827
-
Ecological and immunological determinants of influenza evolution
-
Ferguson NM, Galvani AP, Bush RM. Ecological and immunological determinants of influenza evolution. Nature. 2003; 422(6930):428-33. doi:10.1038/nature01509.
-
(2003)
Nature
, vol.422
, Issue.6930
, pp. 428-433
-
-
Ferguson, N.M.1
Galvani, A.P.2
Bush, R.M.3
-
3
-
-
71149097661
-
A practical influenza neutralization assay to simultaneously quantify hemagglutinin and neuraminidase-inhibiting antibody responses
-
Hassantoufighi A, Zhang H, Sandbulte M, Gao J, Manischewitz J, King L, et al. A practical influenza neutralization assay to simultaneously quantify hemagglutinin and neuraminidase-inhibiting antibody responses. Vaccine. 2010; 28:790-7. doi:10.1016/j.vaccine.2009.10.066.
-
(2010)
Vaccine
, vol.28
, pp. 790-797
-
-
Hassantoufighi, A.1
Zhang, H.2
Sandbulte, M.3
Gao, J.4
Manischewitz, J.5
King, L.6
-
4
-
-
0002171713
-
the agglutination of red cells By allantoic fluid of chick embryos Infected With Influenza Virus
-
Hirst GK. the agglutination of red cells By allantoic fluid of chick embryos Infected With Influenza Virus. Science (New York, N.Y.) 1941; 94:22-3. doi:10.1126/science.94.2427.22.
-
(1941)
Science (New York, N.Y.)
, vol.94
, pp. 22-23
-
-
Hirst, G.K.1
-
5
-
-
33846156218
-
Plasmodium falciparum merozoite surface protein 3 is a target of allele-specific immunity and alleles are maintained by natural selection
-
Polley SD, Tetteh KK, Lloyd JM, Akpogheneta OJ, Greenwood BM, Bojang KA, et al. Plasmodium falciparum merozoite surface protein 3 is a target of allele-specific immunity and alleles are maintained by natural selection. J Infect Dis. 2007; 195(2):279-87. doi:10.1086/509806.
-
(2007)
J Infect Dis
, vol.195
, Issue.2
, pp. 279-287
-
-
Polley, S.D.1
Tetteh, K.K.2
Lloyd, J.M.3
Akpogheneta, O.J.4
Greenwood, B.M.5
Bojang, K.A.6
-
6
-
-
79953288741
-
Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern
-
Recker M, Buckee CO, Serazin A, Kyes S, Pinches R, Christodoulou Z, et al. Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern. PLoS Pathogens. 2011;7(3). doi:10.1371/journal.ppat.1001306.
-
(2011)
PLoS Pathogens.
, vol.7
, Issue.3
-
-
Recker, M.1
Buckee, C.O.2
Serazin, A.3
Kyes, S.4
Pinches R.Christodoulou, Z.5
-
7
-
-
29444442970
-
Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection
-
Frost SDW, Wrin T, Smith DM, Kosakovsky Pond SL, Liu Y, Paxinos E, et al. Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection. Proc Natl Acad Sci U S A. 2005; 102(51):18514-9. doi:10.1073/pnas.0504658102.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.51
, pp. 18514-18519
-
-
Frost, S.D.W.1
Wrin, T.2
Smith, D.M.3
Kosakovsky Pond, S.L.4
Liu, Y.5
Paxinos, E.6
-
8
-
-
0037135148
-
Parasitology. Malaria-from infants to genomics to vaccines
-
Long CA, Hoffman SL. Parasitology. Malaria-from infants to genomics to vaccines. Science (New York, N.Y.) 2002; 297(5580):345-347. doi:10.1126/science.1074484.
-
(2002)
Science (New York, N.Y.)
, vol.297
, Issue.5580
, pp. 345-347
-
-
Long, C.A.1
Hoffman, S.L.2
-
9
-
-
84907407740
-
Contemporary Vaccine Challenges
-
Orenstein WA, Seib K, Graham-rowe D, Berkley S. Contemporary Vaccine Challenges: Improving Global Health One Shot at a Time. 2014; 6(253):1-5. doi:10.1126/scitranslmed.3009848.
-
(2014)
Improving Global Health One Shot at a Time
, vol.6
, Issue.253
, pp. 1-5
-
-
Orenstein, W.A.1
Seib, K.2
Graham-rowe, D.3
Berkley, S.4
-
10
-
-
34250343324
-
Mapping the future of HIV vaccines
-
Nabel GJ. Mapping the future of HIV vaccines. Nat Rev Microbiol. 2007; 5:482-4. doi:10.1038/nrmicro1713.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 482-484
-
-
Nabel, G.J.1
-
11
-
-
0032496361
-
Chaos, persistence, and evolution of strain structure in antigenically diverse infectious agents
-
Gupta S, Ferguson N, Anderson R. Chaos, persistence, and evolution of strain structure in antigenically diverse infectious agents. Science (New York, NY). 1998; 280(5365):912-5. doi:10.1126/science.280.5365.912.
-
(1998)
Science (New York, NY)
, vol.280
, Issue.5365
, pp. 912-915
-
-
Gupta, S.1
Ferguson, N.2
Anderson, R.3
-
12
-
-
34250673625
-
The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types
-
Recker M, Pybus OG, Nee S, Gupta S. The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types. Proc Natl Acad Sci U S A. 2007; 104(18):7711-716. doi:10.1073/pnas.0702154104.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.18
, pp. 7711-7716
-
-
Recker, M.1
Pybus, O.G.2
Nee, S.3
Gupta, S.4
-
13
-
-
0037168563
-
Dynamics and selection of many-strain pathogens
-
Gog JR, Grenfell BT. Dynamics and selection of many-strain pathogens. Proc Natl Acad Sci U S A. 2002; 99(26):17209-14. doi:10.1073/pnas.252512799.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.26
, pp. 17209-17214
-
-
Gog, J.R.1
Grenfell, B.T.2
-
14
-
-
41049110357
-
On the determinants of population structure in antigenically diverse pathogens
-
Gomes MGM, Medley GF, Nokes DJ. On the determinants of population structure in antigenically diverse pathogens. Proc Biol Sci/R Soc. 2002; 269(1488):227-33. doi:10.1098/rspb.2001.1869.
-
(2002)
Proc Biol Sci/R Soc
, vol.269
, Issue.1488
, pp. 227-233
-
-
Gomes, M.G.M.1
Medley, G.F.2
Nokes, D.J.3
-
15
-
-
34548409169
-
On state-space reduction in multi-strain pathogen models, with an application to antigenic drift in influenza A
-
Kryazhimskiy S, Dieckmann U, Levin SA, Dushoff J. On state-space reduction in multi-strain pathogen models, with an application to antigenic drift in influenza A. PLoS Comput Biol. 2007; 3(8):1513-25. doi:10.1371/journal.pcbi.0030159.
-
(2007)
PLoS Comput Biol
, vol.3
, Issue.8
, pp. 1513-1525
-
-
Kryazhimskiy, S.1
Dieckmann, U.2
Levin, S.A.3
Dushoff, J.4
-
16
-
-
0033521173
-
Predicting the evolution of human influenza A
-
Bush RM, Bender CA, Subbarao K, Cox NJ, Fitch WM. Predicting the evolution of human influenza A. Science (New York, NY). 1999; 286(December):1921-5. doi:10.1098/rstb.2001.0999.
-
(1999)
Science (New York, NY)
, vol.286
, Issue.December
, pp. 1921-1925
-
-
Bush, R.M.1
Bender, C.A.2
Subbarao, K.3
Cox, N.J.4
Fitch, W.M.5
-
17
-
-
58549095862
-
Supporting user-oriented analysis for multi-view domain-specific visual languages
-
Guerra E, de Lara J, Malizia A, Díaz P. Supporting user-oriented analysis for multi-view domain-specific visual languages. Inf Softw Technol. 2009; 51:769-84. Rational Runge-Kutta methods for solving systems doi:10.1016/j.infsof.2008.09.005. 0402594v3.
-
(2009)
Inf Softw Technol
, vol.51
, pp. 769-784
-
-
Guerra, E.1
de Lara, J.2
Malizia, A.3
Díaz, P.4
-
18
-
-
77953483090
-
Long-term evolution of antigen repertoires among carried meningococci
-
Buckee CO, Gupta S, Kriz P, Maiden MCJ, Jolley KA. Long-term evolution of antigen repertoires among carried meningococci. Proc Biol Sci/R Soc. 2010; 277(1688):1635-41. doi:10.1098/rspb.2009.2033.
-
(2010)
Proc Biol Sci/R Soc
, vol.277
, Issue.1688
, pp. 1635-1641
-
-
Buckee, C.O.1
Gupta, S.2
Kriz, P.3
Maiden, M.C.J.4
Jolley, K.A.5
-
19
-
-
84888372097
-
Pathogen selection drives nonoverlapping associations between HLA loci
-
Penman BS, Ashby B, Buckee CO, Gupta S. Pathogen selection drives nonoverlapping associations between HLA loci. Proc Natl Acad Sci U S A. 2013; 110(48):19645-50. doi:10.1073/pnas.1304218110.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.48
, pp. 19645-19650
-
-
Penman, B.S.1
Ashby, B.2
Buckee, C.O.3
Gupta, S.4
-
20
-
-
84904606423
-
Contact between bird species of different lifespans can promote the emergence of highly pathogenic avian influenza strains
-
Wikramaratna PS, Pybus OG, Gupta S. Contact between bird species of different lifespans can promote the emergence of highly pathogenic avian influenza strains. Proc Natl Acad Sci U S A. 2014; 111(29):10767-10772. doi:10.1073/pnas.1401849111.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, Issue.29
, pp. 10767-10772
-
-
Wikramaratna, P.S.1
Pybus, O.G.2
Gupta, S.3
-
21
-
-
2942528684
-
Transient cross-reactive immune responses can orchestrate antigenic variation in malaria
-
Recker M, Nee S, Bull PC, Kinyanjui S, Marsh K, Newbold C, et al. Transient cross-reactive immune responses can orchestrate antigenic variation in malaria. Nature. 2004; 429(6991):555-8. doi:10.1038/nature02486.
-
(2004)
Nature
, vol.429
, Issue.6991
, pp. 555-558
-
-
Recker, M.1
Nee, S.2
Bull, P.C.3
Kinyanjui, S.4
Marsh, K.5
Newbold, C.6
-
22
-
-
85019249894
-
-
GNU R. http://www.r-project.org/
-
-
-
-
23
-
-
0344799642
-
Rational Runge-Kutta methods for solving systems of ordinary differential equations
-
Wambecq A. Rational Runge-Kutta methods for solving systems of ordinary differential equations. Computing. 1978; 20:333-42.
-
(1978)
Computing
, vol.20
, pp. 333-342
-
-
Wambecq, A.1
-
24
-
-
85045351869
-
Rcpp: Seamless R and C ++ Integration
-
Eddelbuettel D, Fran R. Rcpp: Seamless R and C ++ Integration. J Stat Softw. 2011; 40(8):1-18. doi:10.1007/978-1-4614-6868-4.
-
(2011)
J Stat Softw
, vol.40
, Issue.8
, pp. 1-18
-
-
Eddelbuettel, D.1
Fran, R.2
-
25
-
-
80053083938
-
Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations
-
Buckee CO, Recker M, Watkins ER, Gupta S. Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations. Proc Natl Acad Sci U S A. 2011; 108(37):15504-9. doi:10.1073/pnas.1102445108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, Issue.37
, pp. 15504-15509
-
-
Buckee, C.O.1
Recker, M.2
Watkins, E.R.3
Gupta, S.4
-
26
-
-
84938983712
-
-
MANTIS at the Evolutionary Ecology of Infectious Disease Group webpage
-
EEID. MANTIS at the Evolutionary Ecology of Infectious Disease Group webpage. 2014. http://www.eeid.ox.ac.uk/mantis .
-
-
-
-
27
-
-
84866978016
-
Persistence of hyperinvasive Meningococcal strain types during Global spread as recorded in the PubMLST database
-
Watkins ER, Maiden MCJ. Persistence of hyperinvasive Meningococcal strain types during Global spread as recorded in the PubMLST database. PLoS ONE. 2012;7(9).doi:10.1371/journal.pone.0045349.
-
(2012)
PLoS ONE.
, vol.7
, Issue.9
-
-
Watkins, E.R.1
Maiden, M.C.J.2
-
28
-
-
42949110732
-
The effect of immune selection on the structure of the meningococcal opa protein repertoire
-
Callaghan MJ, Buckee CO, Jolley KA, Kriz P, Maiden MCJ, Gupta S. The effect of immune selection on the structure of the meningococcal opa protein repertoire. PLoS Pathogens. 2008; 4(3):1000020. doi:10.1371/journal.ppat.1000020.
-
(2008)
PLoS Pathogens.
, vol.4
, Issue.3
-
-
Callaghan, M.J.1
Buckee, C.O.2
Jolley, K.A.3
Kriz, P.4
Maiden, M.C.J.5
Gupta, S.6
-
29
-
-
84938992913
-
-
Rtools
-
Rtools. http://cran.r-project.org/bin/windows/Rtools/
-
-
-
|