Studies in the genus Glutinoglossum

Mycologia

Volumn 107, Issue 3, 2015, Pages 647-657

  Hustad, Vincent P ^a   Miller, Andrew N ^b  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSITY OF ILLINOIS   (United States)

Author keywords

Ascomycota; Earth tongues; Geoglossomycetes; Geoglossum; New species; Systematics

Indexed keywords

BAYESIAN ANALYSIS; CHROMOSOME; FRUITING; FUNGUS; MAXIMUM LIKELIHOOD ANALYSIS; NEW SPECIES;

ASCOMYCOTA; FUNGI; GEOGLOSSUM; GEOGLOSSUM GLUTINOSUM;

FUNGAL DNA; FUNGAL PROTEIN; RIBOSOME DNA; RNA POLYMERASE II;

ASCOMYCETES; CLASSIFICATION; FUNGUS SPORE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYLOGENY;

ASCOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL; FUNGAL PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA POLYMERASE II; SPORES, FUNGAL;

EID: 84938920795     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/14-328     Document Type: Article

References (72)

1. Aguileta G, Marthey S, Chiapello H, Lebrun MH, Rodolphe F et al. 2008. Assessing the performance of single-copy genes for recovering robust phylogenies. Syst Biol 57:613-627, doi:10.1080/10635150802306527
2. Alfaro ME, Zoller S, Lutzoni F. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol 20:255-266, doi:10.1093/molbev/msg028
3. Arauzo S, Iglesias P. 2014. La familia Geoglossaceae ss. str. En la Peninsula Ibérica y la Macaronesia. Errotari 11:166-259.
4. Baker CF. 1914. The lower fungi of the Philippine Islands. Leaflets Philippine Bot 6:2065-2318.
5. Benkert D. 1976. Bemerkenswerte Ascomyceten der DDR II. Die Gattungen Geoglossum und Trichoglossum in der DDR. Mykol Mitteilung 20:47-92.
6. Brock PM, Döring H, Bidartondo MI. 2009. How to know the unknown fungi: the role of a herbarium. New Phytol 181:719-724, doi:10.1111/j.1469-8137.2008.02703
7. Castresana J. 2000. Selection of conserved blocks from multiple alignments and their use in phylogenetic analysis. Mol Biol Evol 17:540-552, doi:10.1093/oxford journals.molbev.a026334
8. Crous PW, Gams W, Stalpers JA, Robert V, Stegehuis G. 2004. MycoBank: an online initiative to launch mycology into the 21st century. St Mycol 50:19-22.
9. Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9:772, doi:10.1038/nmeth.2109
10. Dennis RWG. 1961. Some inoperculate discomycetes from New Zealand. Kew Bull 15:293-320, doi:10.2307/4109373
11. Dennis RWG. 1978. British ascomycetes. Vaduz, Liechenstein: Cramer. 585 p.
12. Durand EJ. 1908. The Geoglossaceae of North America. Ann Mycol 6:387-477.
13. Edgar R. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797, doi:10.1093/nar/gkh340
14. Eernisse DJ, Kluge AG. 1993. Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules and morphology. Mol Biol Evol 10: 1170-1195.
15. El Kholfy S, Outcoumit A, Touhami AO, Belahbib N, Benkirane R, Douira A. 2014. Bibliographic inventory of Tangier's fungi: Catalog of the Ascomycetes fungal flora. Int J Plant, Animal Environ Sci 4:77-92.
16. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791, doi:10.2307/2408678
17. Gouy M, Guindon S, Gascuel O. 2010. SeaView 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27:221-224, doi:10.1093/molbev/msp259
18. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59:307-321, doi:10.1093/sysbio/syq010
19. Guindon S, Gascuel O. 2003. A simple, fast and accurate method to estimate large phylogenies by maximumlikelihood. Syst Biol 52:696-704, doi:10.1080/10635150390235520
20. Hazslinszky F. 1881. Rendhagyó köggombák. É rtek termés kör 11:1-24, FIGS. 1-6.
21. Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182-192, doi:10.2307/2992540
22. Hinkova T, Stoichev G. 1983. New and rare macromycetes for Bulgaria. Fitologiya 23:70-72.
23. Hustad VP, Miller AN, Dentinger BTM, Cannon PF. 2013. Generic circumscriptions in Geoglossomycetes. Persoonia 31:101-111, doi:10.3767/003158513X671235
24. Hustad VP, Miller AN, Moingeon J-M, Priou J-P. 2011. Inclusion of Nothomitra in Geoglossomycetes. Mycosphere 2:646-654, doi:10.5943/mycosphere/2/6/5
25. Imai S. 1941. Geoglossaceae Japoniae. J Fac Agric Hokkaido Univ 45:155-264.
26. Imai S. 1942. Contributiones ad studia monographica Geoglossacearum. Bot Mag (Tokyo) 56:523-527, doi:10.15281/jplantres1887.56.523
27. Kearsey SE, Labib K. 1998. MCM proteins: evolution, properties and role in DNA replication. Biochim Biophys Acta 1398:113-136, doi:10.1016/S0167-4781(98)00033-5
28. Kluge AG. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst Biol 38:7-25, doi:10.1093/sysbio/38.1.7
29. Kučera V and Lizoň P. 2012. Geoglossaceous fungi in Slovakia III. The genus Geoglossum. Biologia 67:654-658.
30. Landvik S. 1996. Neolecta, a fruit-body producing genus of the basal ascomycetes, as shown by SSU and LSU rDNA sequences. Mycol Res 100:199-202, doi:10.1016/S0953-7562(96)80122-5
31. Lutzoni F, Kauff F, Cox C, McLaughlin D, Celio G. et al. 2004. Assembling the Fungal Tree of Life: progress classification and evolution of subcellular traits. Am J Bot 91:1446-1480, doi:10.3732/ajb.91.10.1446
32. Maas Geesteranus RA. 1964. De fungi van Nederland I. Geoglossaceae-aardtongen. Wentensch Meded Koninkl Nederl Natuurhist Verenig 52:1-24.
33. Maas Geesteranus RA. 1965. Geoglossaceae of India and adjacent countries. Persoonia 4:19-46.
34. Mains EB. 1954. North American species of Geoglossum and Trichoglossum. Mycologia 46:586-631.
35. Massee G. 1897. A monograph of the Geoglossaceae. Ann Bot 11:225-306.
36. Matheny PB, Liu YJ, Ammirati JF, Hall BD. 2002. Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe: Agaricales). Am J Bot 89:688-698, doi:10.3732/ajb.89.4.688
37. Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES science gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov 2010, New Orleans, Louisiana.
38. Mitchel D. 2006. Survey of the grassland fungi of County Clare. Kilkenny: Heritage Council.
39. Moingeon S, Moingeon JM. 2003. Les Geoglossaceae en Franche-Comte. Bull Soc Hist Nat Doubs 89:61-66.
40. Moir D, Steward SE, Osmond BC, Botstein D. 1982. Coldsensitive cell division-cycle mutants of yeast: isolation, properties and pseudoreversion studies. Genetics 100: 547-563.
41. Nannfeldt JA. 1942. The Geoglossaceae of Sweden. Ark Bot 30A:1-67.
42. Ohenoja E. 1995. Occurrence of Geoglossum, Trichoglossum and Microglossum (Ascomycota, Leotiales) in Finland. Doc Mycol 25:285-294.
43. Ohenoja E. 2000. Geoglossaceae. In: Hansen L, Knudsen H, eds. Nordic Macromycetes. Vol. 1. Copenhagen: Nordsvamp. p 177-183.
44. Persoon CH. 1794. Neuer Versuch einer systematischen Eintheilung der Schwämme. Neues Mag Bot 1:63-128.
45. Persoon CH. 1796. Observationes Mycologicae 1. Leipzig, Germany: Gesnerus, Usterius & Wolfius.
46. Persoon CH. 1797. Commentatio de Fungis Clavaeformius., Leipzig: Germany: Petrum, Phillipum & Wolf.
47. Persoon CH. 1822. Mycologia Europaea, Erlangen: Germany: Palmius, vol 1.
48. Posada D, Buckley TR. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst Biol 53:793-808, doi:10.1080/10635150490522304
49. Prasher IB, Sharma R. 1997. Geoglossum Pers. Geoglossaceae, Leotiales in eastern Himalayas. In: Chahal SS, Prashar IB, Randhawa HS, Arya S, eds. Achievements and prospects in mycology and plant pathology. Dehradun, India: International Book Distributors. p 12-19.
50. Promputtha I, Miller AN. 2010. Three new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from the Great Smoky Mountains National Park. Mycologia 102:574-587, doi:10.3852/09-051
51. Raja HA, Schoch CL, Hustad VP, Shearer CA, Miller AN. 2011. Testing the phylogenetic utility of MCM7 in the Ascomycota. MycoKeys 1:46-56, doi:10.3897/mycokeys. 1.1966
52. Rambaut A, Drummond AJ. 2009. Tracer 1.5. Available from http://tree.bio.ed.ac.uk/software/tracer.
53. Ramirez-Lopez I, Rios MV. 2007. El conocimiento taxonó-mico de Geoglossaceae sensu lato (Fungi: Ascomycetes) en México con énfasis en la zona centro y sur. Rev Mex Micol 25:41-49.
54. Ronquist F, Teslenko M, van der Mark P, Ayers D, Darling A et al. 2012. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539-542, doi:10.1093/sysbio/sys029
55. Saccardo PA. 1884. Conspectus enerum Discomycetum hucusque cognitorum. Bot Cent 18:213-220, 247-257.
56. Schmitt I, Crespo A, Divakar PK, Fankhouser JD, Herman-Sackett E et al. 2009. New primers for single-copy genes in fungal phylogenetics and systematics. Persoonia 23:35-40, doi:10.3767/003158509X470602
57. Schoch CL, Sung G-H, López-Giráldez F, Townsend JP, Miadlikowska J et al. 2009. The Ascomycota tree of life: A phylum wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol 58:224-239, doi:10.1093/sysbio/syp020
58. Shirley C. 2004. Fungi of Murphy's Bush. Auckland Bot Soc J 59:101-103.
59. Spooner BM. 1987. Helotiales of Australasia: Geoglossaceae, Orbiliaceae, Sclerotiniaceae, Hyaloscyphaceae. Bib Mycol 116:1-711.
60. Stiller JW, Hall BD. 1997. The origin of red algae: implications for plastid evolution. PNAS 94: 4520-4525, doi:10.1073/pnas.94.9.4520
61. Townsend JP. 2007. Profiling phylogenetic informativeness. Syst Biol 56:222-231, doi:10.1080/10635150701311362
62. Velenovsky J. 1934. Monographica Discomycetum Bohemiae., Novyt Bydzov: Janata.
63. Vilgalys R, Hester M. 1990. Rapid identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238-4246.
64. Voitk A. 2013. Earth tongues of Newfoundland and Labrador. Omphalina 4:14-19.
65. Waldrop MW, Zak DR, Blackwood CB, Curtis CD, Tilman D. 2006. Resource availability controls fungal diversity across a plant diversity gradient. Ecol Lett 9:1127-1135., doi:10.1111/j.1461-0248.2006.00965.x
66. Wang Z, Binder M, Hibbett D. 2005. Life history and systematics of the aquatic discomycetes Mitrula (Helotiales, Ascomycota) based on cultural, morphological and molecular studies. Am J Bot 92:1565-1574, doi:10.3732/ajb.92.9.1565
67. Wang Z, Nilsson RH, Lopez-Giraldez F, Zhuang W, Dai Y, Johnston PR, Townsend JP. 2011. Tasting soil fungal diversity with earth tongues: Phylogenetic test of SATé alignments for environmental ITS data. PLoS One 6: e19039.
68. Waterston JM, Sinden JW, Whetzel HH. 1945. Notes on the Geoglossaceae of Bermuda. Mycologia 37:32-36, doi:10.2307/3754847
69. White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press. p 315-322.
70. Wiens JJ. 1998. Combining datasets with different phylogenetic histories. Syst Biol 47:568-581, doi:10.1080/106351598260581
71. Zervakis GI, Dimou DM, Polemis E, Karadelev M. 2002. Mycodiversity studies in selected ecosystems of Greece II. Macrofungi associated with conifers in the Taygetos Mountain (Peloponnese). Mycotaxon 82:177-205.
72. Zhuang W. 1998. Geoglossaceae. Flora Fungorum Sin 8: 78-127.