Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence

Frontiers in Plant Science

Volumn 6, Issue AUG, 2015, Pages

  Urban, Martin ^a   Irvine, Alistair G ^a   Cuzick, Alayne ^a   Hammond Kosack, Kim E ^a  

^a ROTHAMSTED RESEARCH   (United Kingdom)

Author keywords

Comparative genomics; Emerging diseases; Gene regulatory networks; Genetic recombination; Horizontal gene transfer; Phytopathogens; Plant diseases; Protein interaction mapping

Indexed keywords

ANIMALIA;

EID: 84938832620     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2015.00605     Document Type: Article

References (5)

1. Hu, X., Xiao, G., Zheng, P., Shang, Y., Su, Y., Zhang, X., et al. (2014). Trajectory and genomic determinants of fungal-pathogen speciation and host adaptation. Proc. Natl. Acad. Sci. U. S. A. 111, 16796-16801. doi: 10. 1073/pnas. 1412662111.
2. Kersey, P. J., Allen, J. E., Christensen, M., Davis, P., Falin, L. J., Grabmueller, C., et al. (2014). Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 42, D546-D552. doi: 10. 1093/nar/gkt979.
3. Rutherford, K. M., Harris, M. A., Lock, A., Oliver, S. G., and Wood, V. (2014). Canto: an online tool for community literature curation. Bioinformatics 30, 1791-1792. doi: 10. 1093/bioinformatics/btu103.
4. Urban, M., Pant, R., Raghunath, A., Irvine, A. G., Pedro, H., and Hammond-Kosack, K. E. (2015). The pathogen-host interactions database (PHI-base): additions and future developments. Nucleic Acids Res. 43, D645-D655. doi: 10. 1093/nar/gku1165.
5. Zhang, Y., Zhang, K., Fang, A., Han, Y., Yang, J., Xue, M., et al. (2014). Specific adaptation ofUstilaginoidea virens in occupying host florets revealed by comparative and functional genomics. Nat. Commun. 5, 3849. doi: 10. 1038/ncomms4849.