Linkage disequilibrium and inversion-typing of the Drosophila melanogaster genome reference panel

G3: Genes, Genomes, Genetics

Volumn 5, Issue 8, 2015, Pages 1695-1701

  Houle, David ^a   Márquez, Eladio J ^a,b  

^a FLORIDA STATE UNIVERSITY   (United States)

^b JACKSON LABORATORY   (United States)

Author keywords

Disequilibrium; Inversion; Linkage

Indexed keywords

ARTICLE; CENTROMERE; CHROMOSOME 3; CHROMOSOME ARM; CHROMOSOME INVERSION; DROSOPHILA MELANOGASTER; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC VARIABILITY; GENOTYPE; HETEROZYGOSITY; HETEROZYGOTE; HOMOZYGOTE; INDEL MUTATION; INSECT GENETICS; KARYOTYPE; KARYOTYPING; NONHUMAN; PHENOTYPIC VARIATION; SINGLE NUCLEOTIDE POLYMORPHISM; TELOMERE; X CHROMOSOME; ANIMAL; GENETICS; INSECT GENOME;

DROSOPHILA MELANOGASTER;

ANIMALS; CHROMOSOME INVERSION; DROSOPHILA MELANOGASTER; GENE FREQUENCY; GENOME, INSECT; GENOTYPE; HETEROZYGOTE; LINKAGE DISEQUILIBRIUM; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84938823222     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.115.019554     Document Type: Article

References (12)

1. Corbett-Detig, R. B., and D. L. Hartl, 2012 Population genomics of inversion polymorphisms in Drosophila melanogaster. PLoS Genet. 8: e1003056.
2. Corbett-Detig, R. B., C. Cardeno, and C. H. Langley, 2012 Sequence-based detection and breakpoint assembly of polymorphic inversions. Genetics 192: 131-137.
3. Corbett-Detig, R. B., J. Zhou, A. G. Clark, D. L. Hartl, and J. F. Ayroles, 2013 Genetic incompatibilities are widespread within species. Nature 504: 135-137.
4. Cridland, J. M., S. J. Macdonald, A. D. Long, and K. R. Thornton, 2013 Abundance and distribution of transposable elements in two Drosophila QTL mapping resources. Mol. Biol. Evol. 30: 2311-2327.
5. Duchen, P., D. Živković, S. Hutter, W. Stephan, and S. Laurent, 2013 Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population. Genetics 193: 291-301.
6. Hill, W. G., and A. Robertson, 1966 The effect of linkage on limits to artificial selection. Genet. Res. 8: 269-294.
7. Huang, W., A. Massouras, Y. Inoue, J. Peiffer, M. Rámia et al., 2014 Natural variation in genome architecture among 205 Drosophila melanogaster genetic reference panel lines. Genome Res. 24: 1193-1208.
8. Langley, C. H., K. Stevens, C. Cardeno, Y. C. G. Lee, D. R. Schrider et al., 2012 Genomic variation in natural populations of Drosophila melanogaster. Genetics 192: 533-598.
9. Mackay, T. F. C., S. Richards, E. A. Stone, A. Barbadilla, J. F. Ayroles et al., 2012 The Drosophila melanogaster genetic reference panel. Nature 482: 173-178.
10. Pool, J.E., 2015 Natural selection shapes the mosaic ancestry of the Drosophila genetic reference panel and the D. melanogaster reference genome. bioRxiv 10.1101/014837.10.1101/014837
11. Pool, J. E., R. B. Corbett-Detig, R. P. Sugino, K. A. Stevens, C. M. Cardeno et al., 2012 Population genomics of sub-Saharan Drosophila melanogaster:African diversity and non-African admixture. PLoS Genet. 8: e1003080.
12. SAS Institute, Inc., 2011 The SAS System for Windows, Release 9.3, SAS Institute, Cary, NC.