Integration analysis of quantitative trait loci for resistance to Sclerotinia sclerotiorum in Brassica napus

Euphytica

Volumn 205, Issue 2, 2015, Pages 483-489

  Li, Jiqiang ^a   Zhao, Zunkang ^b   Hayward, Alice ^c   Cheng, Hongyu ^d   Fu, Donghui ^b  

^a Institute of Agricultural Sciences of Zhangye Prefecture   (China)

^b JIANGXI AGRICULTURAL UNIVERSITY   (China)

^c UNIVERSITY OF QUEENSLAND   (Australia)

^d HEXI UNIVERSITY   (China)

Author keywords

Brassica; In silico integration; Quantitative trait loci (QTL); Sclerotinia sclerotiorum

Indexed keywords

BRASSICA; BRASSICA NAPUS; SCLEROTINIA SCLEROTIORUM;

EID: 84938741624     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-015-1417-0     Document Type: Article

References (24)

1. Behla RS, Fernando WGD, Li G (2009) Identification of quantitative trait loci for resistance against sclerotinia stem rot in Brassica napus. Can J Plant Pathol (Revue Canadienne De Phytopathologie) 31:477–478
2. Boland GJ, Hall R (1994) Index of plant hosts of Sclerotinia-sclerotiorum. Can J Plant Pathol (Revue Canadienne De Phytopathologie) 16:93–108
3. Chalhoub B et al (2014) Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science 345:950–953
4. Fusari CM et al (2012) Association mapping in sunflower for Sclerotinia head rot resistance. BMC Plant Biol 12:93
5. Graham MA, Marek LF, Shoemaker RC (2002) Organization, expression and evolution of a disease resistance gene cluster in soybean. Genetics 162:1961–1977
6. Hulbert SH, Webb CA, Smith SM, Sun Q (2001) Resistance gene complexes: evolution and utilization. Annu Rev Phytopathol 39:285–312
7. Kohler A et al (2008) Genome-wide identification of NBS resistance genes in Populus trichocarpa. Plant Mol Biol 66:619–636
8. Lacape JM et al (2010) Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadense RIL population. BMC Plant Biol 10:132
9. Mallard S, Cantet M, Massire A, Bachellez A, Ewert S, Lefebvre V (2013) A key QTL cluster is conserved among accessions and exhibits broad-spectrum resistance to Phytophthora capsici: a valuable locus for pepper breeding. Mol Breed 32:349–364
10. Mei J et al (2013) Identification of genomic regions involved in resistance against Sclerotinia sclerotiorum from wild Brassica oleracea. Theor Appl Genet 126:549–556
11. Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15:809–834
12. Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8:1113–1130
13. Parkin IA, Sharpe AG, Keith DJ, Lydiate DJ (1995) Identification of the A and C genomes of amphidiploid Brassica napus (oilseed rape). Genome 38:1122–1131
14. Porter BW, Paidi M, Ming R, Alam M, Nishijima WT, Zhu YJ (2009) Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family. Mol Genet Genomics 281:609–626
15. Rong J et al (2007) Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics 176:2577–2588
16. Said JI, Lin ZX, Zhang XL, Song MZ, Zhang JF (2013) A comprehensive meta QTL analysis for fiber quality, yield, yield related and morphological traits, drought tolerance, and disease resistance in tetraploid cotton. BMC Genomics 14(1):776
17. Sanseverino W et al (2013) PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants. Nucleic Acids Res 41:D1167–D1171
18. Wei F, Wing RA, Wise RP (2002) Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. Plant Cell 14:1903–1917
19. Wei D, Mei J, Fu Y, Disi JO, Li J, Qian W (2014) Quantitative trait loci analyses for resistance to Sclerotinia sclerotiorum and flowering time in Brassica napus. Mol Breed. doi:10.1007/s11032-014-0139-7
20. Wu J et al (2013) Identification of QTLs for resistance to Sclerotinia stem rot and BnaC.IGMT5.a as a candidate gene of the major resistant QTL SRC6 in Brassica napus. PLoS One 8:e67740
21. Yin XR, Yi B, Chen W, Zhang WJ, Tu JX, Fernando WGD, Fu TD (2010) Mapping of QTLs detected in a Brassica napus DH population for resistance to Sclerotinia sclerotiorum in multiple environments. Euphytica 173:25–35
22. Zhao J, Meng J (2003) Genetic analysis of loci associated with partial resistance to Sclerotinia sclerotiorum in rapeseed (Brassica napus L.). Theor Appl Genet 106:759–764
23. Zhao J, Udall JA, Quijada PA, Grau CR, Meng J, Osborn TC (2006) Quantitative trait loci for resistance to Sclerotinia sclerotiorum and its association with a homeologous non-reciprocal transposition in Brassica napus L. Theor Appl Genet 112:509–516
24. Zhou QH, Fu DH, Mason AS, Zeng YJ, Zhao CX, Huang YJ (2014) In silico integration of quantitative trait loci for seed yield and yield-related traits in Brassica napus. Mol Breed 33:881–894