Soil microbial responses over 2 years following biochar addition to a north temperate forest

Biology and Fertility of Soils

Volumn 51, Issue 6, 2015, Pages 649-659

  Noyce, Genevieve L ^a   Basiliko, Nathan ^a,b   Fulthorpe, Roberta ^a   Sackett, Tara E ^a   Thomas, Sean C ^a  

^a UNIVERSITY OF TORONTO   (Canada)

^b LAURENTIAN UNIVERSITY   (Canada)

Author keywords

Bacteria; Biochar; Fungi; Phosphorus; qPCR; T RFLP

Indexed keywords

ACTIVITY PATTERN; BACTERIUM; BIOMASS; CHARCOAL; COMMUNITY COMPOSITION; COMMUNITY RESPONSE; DECIDUOUS FOREST; FUNGUS; NUTRIENT LIMITATION; PHOSPHATE; POLYMERASE CHAIN REACTION; PYROLYSIS; SOIL AMENDMENT; SOIL MICROORGANISM; TEMPERATE FOREST;

CANADA; ONTARIO [CANADA];

ACER; ACER SACCHARUM; BACTERIA (MICROORGANISMS); FUNGI; PICEA GLAUCA;

EID: 84938740066     PISSN: 01782762     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00374-015-1010-7     Document Type: Article

References (54)

1. Abdo Z, Schüette UME, Bent SJ, Williams CJ, Forney LJ, Joyce P (2006) Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Environ Microbiol 8:929–938. doi:10.1111/j.1462-2920.2005.00959.x
2. Ameloot N, Graber ER, Verheijen FGA, De Neve S (2013) Interactions between biochar stability and soil organisms: review and research needs. Eur J Soil Sci 64:379–390. doi:10.1111/ejss.12064
3. Anders E, Watzinger A, Rempt F, Kitzler B, Wimmer B, Zehetner F, Stahr K, Zechmeister-Boltenstern S, Soja G (2013) Biochar affects the structure rather than the total biomass of microbial communities in temperate soils. Agric Food Sci 22:404–423
4. Biederman LA, Harpole WS (2013) Biochar and its effects on plant productivity and nutrient cycling: a meta-analysis. GCB Bioenergy 5:202–214. doi:10.1111/gcbb.12037
5. Bissett A, Richardson AE, Baker G, Kirkegaard J, Thrall PH (2013) Bacterial community response to tillage and nutrient additions in a long-term wheat cropping experiment. Soil Biol Biochem 58:281–292. doi:10.1016/j.soilbio.2012.12.002
6. 15N labelling. Soil Biol Biochem 48:51–59. doi:10.1016/j.soilbio.2012.01.012
7. Casson NJ, Eimers MC, Watmough SA (2012) An assessment of the nutrient status of sugar maple in Ontario: indications of phosphorus limitation. Environ Monit Assess 184:5917–5927
8. Chen J, Liu X, Zheng J, Zhang B, Lu H, Chi Z, Pan G, Li L, Zheng J, Zhang X, Wang J, Yu X (2013) Biochar soil amendment increased bacterial but decreased fungal gene abundance with shifts in community structure in a slightly acid rice paddy from Southwest China. Appl Soil Ecol 71:33–44. doi:10.1016/j.apsoil.2013.05.003
9. DeLuca TH, MacKenzie MD, Gundale MJ, Holben WE (2006) Wildfire-produced charcoal directly influences nitrogen cycling in ponderosa pine forests. Soil Sci Soc Am J 70:448–453. doi:10.2136/sssaj2005.0096
10. DeLuca TH, MacKenzie MD, Gundale MJ (2009) Chapter 14: Biochar effects on soil nutrient transformations. In: Lehmann J, Joseph S (eds) Biochar for environmental management. Earthscan, London, pp 251–270
11. Domene X, Mattana S, Hanley K, Enders A, Lehmann J (2014) Medium-term effects of corn biochar addition on soil biota activities and functions in a temperate soil cropped to corn. Soil Biol Biochem 72:152–162. doi:10.1016/j.soilbio.2014.01.035
12. Farrell M, Macdonald LM, Butler G, Chirino-Valle I, Condron L (2014) Biochar and fertiliser applications influence phosphorus fractionation and wheat yield. Biol Fertil Soils 50:169–178. doi:10.1007/s00374-013-0845-z
13. Fierer N, Jackson JA, Vilgalys R, Jackson RB (2005) Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Appl Environ Microbiol 71:4117–4120. doi:10.1128/AEM. 71.7.4117-4120.2005
14. Gomez JD, Denef K, Stewart CE, Zheng J, Cotrufo MF (2014) Biochar addition rate influences soil microbial abundance and activity in temperate soils. Eur J Soil Sci 65:28–39. doi:10.1111/ejss.12097
15. Gradowski T, Thomas SC (2006) Phosphorus limitation of sugar maple growth in central Ontario. For Ecol Manag 226:104–109. doi:10.1016/j.foreco.2005.12.062
16. Gradowski T, Thomas SC (2008) Responses of Acer saccharum canopy trees and saplings to P, K and lime additions under high N deposition. Tree Physiol 28:173–185. doi:10.1093/treephys/28.2.173
17. Grossman JM, O’Neill BE, Tsai SM, Liang B, Neves E, Lehmann J, Thies JE (2010) Amazonian anthrosols support similar microbial communities that differ distinctly from those extant in adjacent, unmodified soils of the same mineralogy. Microb Ecol 60:192–205. doi:10.1007/s00248-010-9689-3
18. Högberg MN, Yarwood SA, Myrold DD (2014) Fungal but not bacterial soil communities recover after termination of decadal nitrogen additions to boreal forest. Soil Biol Biochem 72:35–43. doi:10.1016/j.soilbio.2014.01.014
19. Jin H (2010) Characterization of microbial life colonizing biochar and biochar-amended soils. PhD Dissertation, Cornell University
20. 2 release is both biotically and abiotically mediated. Soil Biol Biochem 43:1723–1731. doi:10.1016/j.soilbio.2011.04.018
21. Jones DL, Rousk J, Edwards-Jones G, DeLuca TH, Murphy DV (2012) Biochar-mediated changes in soil quality and plant growth in a three year field trial. Soil Biol Biochem 45:113–124. doi:10.1016/j.soilbio.2011.10.012
22. Khodadad CLM, Zimmerman AR, Green SJ, Uthandi S, Foster JS (2011) Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments. Soil Biol Biochem 43:385–392. doi:10.1016/j.soilbio.2010.11.005
23. Kluber LA, Carrino-Kyker SR, Coyle KP, DeForest JL, Hewins CR, Shaw AN, Smemo KA, Burke DJ (2012) Mycorrhizal response to experimental pH and P manipulation in acidic hardwood forests. PLoS ONE 7:e48946. doi:10.1371/journal.pone.0048946
24. Kolb SE, Fermanich KJ, Dornbush ME (2009) Effect of charcoal quantity on microbial biomass and activity in temperate soils. Soil Sci Soc Am J 73:1173. doi:10.2136/sssaj2008.0232
25. Kolton M, Harel YM, Pasternak Z, Graber ER, Elad Y, Cytryn E (2011) Impact of biochar application to soil on the root-associated bacterial community structure of fully developed greenhouse pepper plants. Appl Environ Microbiol 77:4924–4930. doi:10.1128/AEM. 00148-11
26. Komsta L (2011) Outliers: test for outliers
27. Legendre P, Legendre L (1998) Numerical ecology, 2nd edn. Elsevier
28. Lehmann J, Gaunt J, Rondon M (2006) Biochar sequestration in terrestrial ecosystems: a review. Mitig Adapt Strateg Glob Chang 11:395–419
29. Lehmann J, Rillig MC, Thies J, Masiello CA, Hockaday WC, Crowley D (2011) Biochar effects on soil biota: a review. Soil Biol Biochem 43:1812–1836. doi:10.1016/j.soilbio.2011.04.022
30. Luo Y, Durenkamp M, De Nobili M, Lin Q, Brookes PC (2011) Short term soil priming effects and the mineralisation of biochar following its incorporation to soils of different pH. Soil Biol Biochem 43:2304–2314. doi:10.1016/j.soilbio.2011.07.020
31. Mitchell PJ, Simpson AJ, Soong R, Simpson MJ (2015) Shifts in microbial community and water-extractable organic matter composition with biochar amendment in a temperate forest soil. Soil Biol Biochem 81:244–254. doi:10.1016/j.soilbio.2014.11.017
32. Mukherjee A, Lal R (2013) Biochar impacts on soil physical properties and greenhouse gas emissions. Agronomy 3:313–339. doi:10.3390/agronomy3020313
33. Oksanen J, Blanchet FG, Kindt R, Legendre P, Minchin PR, O’Hara RB, Simpson GL, Solymos P, Stevens MHH, Wagner H (2013) vegan: community ecology package
34. 2 efflux in uneven-aged managed forests: temporal patterns following harvest and effects of edaphic heterogeneity. Plant Soil 289:253–264. doi:10.1007/s11104-006-9133-0
35. 2 efflux and fine root production in an N-saturated northern hardwood forest. Ecosystems 13:1145–1156. doi:10.1007/s10021-010-9379-5
36. Prayogo C, Jones JE, Baeyens J, Bending GD (2014) Impact of biochar on mineralisation of C and N from soil and willow litter and its relationship with microbial community biomass and structure. Biol Fertil Soils 50:695–702. doi:10.1007/s00374-013-0884-5
37. Quilliam RS, Marsden KA, Gertler C, Rousk J, DeLuca TH, Jones DL (2012) Nutrient dynamics, microbial growth and weed emergence in biochar amended soil are influenced by time since application and reapplication rate. Agric Ecosyst Environ 158:192–199. doi:10.1016/j.agee.2012.06.011
38. Rousk J, Brookes PC, Bååth E (2009) Contrasting soil pH effects on fungal and bacterial growth suggest functional redundancy in carbon mineralization. Appl Environ Microbiol 75:1589–1596. doi:10.1128/AEM. 02775-08
39. Rousk J, Bååth E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N (2010) Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 4:1340–1351. doi:10.1038/ismej.2010.58
40. Rousk J, Dempster DN, Jones DL (2013) Transient biochar effects on decomposer microbial growth rates: evidence from two agricultural case-studies. Eur J Soil Sci 64:770–776. doi:10.1111/ejss.12103
41. R Core Team (2012) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria
42. Sackett TE, Basiliko N, Noyce GL, Winsborough C, Schurman J, Ikeda C, Thomas SC (2014) Soil and greenhouse gas responses to biochar addition in a temperate hardwood forest. GCB Bioenergy. doi:10.1111/gcbb.12211
43. Singh B, Singh BP, Cowie AL (2010) Characterisation and evaluation of biochars for their application as a soil amendment. Soil Res 48:516–525
44. Sohi SP, Krull E, Lopez-Capel E, Bol R (2010) A review of biochar and its use and function in soil. In: Sparks DL (ed) Advances in agronomy. Academic Press, London, pp 47–82
45. Song Y, Zhang X, Ma B, Chang SX, Gong J (2014) Biochar addition affected the dynamics of ammonia oxidizers and nitrification in microcosms of a coastal alkaline soil. Biol Fertil Soils 50:321–332. doi:10.1007/s00374-013-0857-8
46. Steinbeiss S, Gleixner G, Antonietti M (2009) Effect of biochar amendment on soil carbon balance and soil microbial activity. Soil Biol Biochem 41:1301–1310. doi:10.1016/j.soilbio.2009.03.016
47. Thomas SC (2013) Biochar and its potential in Canadian forestry. Silvic Mag 2013:4–6
48. Van der Heijden MGA, Horton TR (2009) Socialism in soil? The importance of mycorrhizal fungal networks for facilitation in natural ecosystems. J Ecol 97:1139–1150. doi:10.1111/j.1365-2745.2009.01570.x
49. Van der Heijden MGA, Bardgett RD, van Straalen NM (2008) The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett 11:296–310. doi:10.1111/j.1461-0248.2007.01139.x
50. Vance E, Brookes P, Jenkinson D (1987) An extraction method for measuring soil microbial biomass C. Soil Biol Biochem 19:703–707
51. Wakelin SA, Gregg AL, Simpson RJ, Li GD, Riley IT, McKay AC (2009) Pasture management clearly affects soil microbial community structure and N-cycling bacteria. Pedobiologia 52:237–251. doi:10.1016/j.pedobi.2008.10.001
52. Wardle DA, Zackrisson O, Nilsson M-C (1998) The charcoal effect in boreal forests: mechanisms and ecological consequences. Oecologia 115:419–426. doi:10.1007/s004420050536
53. West TO, McBride AC (2005) The contribution of agricultural lime to carbon dioxide emissions in the United States: dissolution, transport, and net emissions. Agric Ecosyst Environ 108:145–154. doi:10.1016/j.agee.2005.01.002
54. Zimmerman AR, Gao B, Ahn M-Y (2011) Positive and negative carbon mineralization priming effects among a variety of biochar-amended soils. Soil Biol Biochem 43:1169–1179. doi:10.1016/j.soilbio.2011.02.005