Reliability comparison of spontaneous brain activities between BOLD and CBF contrasts in eyes-open and eyes-closed resting states

NeuroImage

Volumn 121, Issue , 2015, Pages 91-105

  Zou, Qihong ^a   Miao, Xinyuan ^b   Liu, Dapeng ^b   Wang, Danny J J ^c   Zhuo, Yan ^b   Gao, Jia Hong ^a  

^a PEKING UNIVERSITY   (China)

^b INSTITUTE OF BIOPHYSICS   (China)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Cerebral blood flow; Eyes closed; Eyes open; Oscillation; Resting state

Indexed keywords

ADULT; ARTERIAL SPIN LABELING; ARTICLE; BOLD SIGNAL; BRAIN BLOOD FLOW; CINGULATE GYRUS; CONTROLLED STUDY; CORRELATIONAL STUDY; ELECTROENCEPHALOGRAM; EYELID CLOSURE; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; FUNCTIONAL NEUROIMAGING; GRAY MATTER; HUMAN; HUMAN EXPERIMENT; MALE; MATHEMATICAL ANALYSIS; NORMAL HUMAN; PRIORITY JOURNAL; RESTING STATE NETWORK; TEST RETEST RELIABILITY; VOXEL BASED MORPHOMETRY; YOUNG ADULT; BRAIN; BRAIN CIRCULATION; EYE; NUCLEAR MAGNETIC RESONANCE IMAGING; PHYSIOLOGY; PROCEDURES; REPRODUCIBILITY; REST; SPIN LABELING; STANDARDS;

SPIN LABELING;

ADULT; BRAIN; CEREBROVASCULAR CIRCULATION; EYE; FEMALE; FUNCTIONAL NEUROIMAGING; HUMANS; MAGNETIC RESONANCE IMAGING; MALE; REPRODUCIBILITY OF RESULTS; REST; SPIN LABELS; YOUNG ADULT;

EID: 84938685317     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2015.07.044     Document Type: Article

References (67)

1. Anderson J.A., Campbell K.L., Amer T., Grady C.L., Hasher L. Timing is everything: age differences in the cognitive control network are modulated by time of day. Psychol. Aging 2014, 29:648-657.
2. Beall E.B., Lowe M.J. Isolating physiologic noise sources with independently determined spatial measures. Neuroimage 2007, 37:1286-1300.
3. Beall E.B., Lowe M.J. The non-separability of physiologic noise in functional connectivity MRI with spatial ICA at 3T. J. Neurosci. Methods 2010, 191:263-276.
4. Berger H. Ur ber das Elektrenkephalogramm des Menschen. Arch. Psychiatr. Nervenkr. 1929, 87:44.
5. Berger H. Ur ber das Elektrenkephalogramm des Menschen II. J. Psychol. Neurol. 1930, 40:20.
6. Birn R.M., Cornejo M.D., Molloy E.K., Patriat R., Meier T.B., Kirk G.R., Nair V.A., Meyerand M.E., Prabhakaran V. The influence of physiological noise correction on test-retest reliability of resting-state functional connectivity. Brain Connect. 2014, 4:511-522.
7. Biswal B.B., Mennes M., Zuo X.N., Gohel S., Kelly C., Smith S.M., Beckmann C.F., Adelstein J.S., Buckner R.L., Colcombe S., Dogonowski A.M., Ernst M., Fair D., Hampson M., Hoptman M.J., Hyde J.S., Kiviniemi V.J., Kotter R., Li S.J., Lin C.P., Lowe M.J., Mackay C., Madden D.J., Madsen K.H., Margulies D.S., Mayberg H.S., McMahon K., Monk C.S., Mostofsky S.H., Nagel B.J., Pekar J.J., Peltier S.J., Petersen S.E., Riedl V., Rombouts S.A., Rypma B., Schlaggar B.L., Schmidt S., Seidler R.D., Siegle G.J., Sorg C., Teng G.J., Veijola J., Villringer A., Walter M., Wang L., Weng X.C., Whitfield-Gabrieli S., Williamson P., Windischberger C., Zang Y.F., Zhang H.Y., Castellanos F.X., Milham M.P. Toward discovery science of human brain function. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:4734-4739.
8. Chen Y., Wang D.J., Detre J.A. Test-retest reliability of arterial spin labeling with common labeling strategies. J. Magn. Reson. Imaging 2011, 33:940-949.
9. Chuang K.H., van Gelderen P., Merkle H., Bodurka J., Ikonomidou V.N., Koretsky A.P., Duyn J.H., Talagala S.L. Mapping resting-state functional connectivity using perfusion MRI. Neuroimage 2008, 40:1595-1605.
10. Cox R.W. AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. Comput. Biomed. Res. 1996, 29:162-173.
11. Dai W., Garcia D., de Bazelaire C., Alsop D.C. Continuous flow-driven inversion for arterial spin labeling using pulsed radio frequency and gradient fields. Magn. Reson. Med. 2008, 60:1488-1497.
12. Garrett D.D., Kovacevic N., McIntosh A.R., Grady C.L. Blood oxygen level-dependent signal variability is more than just noise. J. Neurosci. 2010, 30:4914-4921.
13. Garrett D.D., Kovacevic N., McIntosh A.R., Grady C.L. The importance of being variable. J. Neurosci. 2011, 31:4496-4503.
14. Garrett D.D., Samanez-Larkin G.R., MacDonald S.W., Lindenberger U., McIntosh A.R., Grady C.L. Moment-to-moment brain signal variability: a next frontier in human brain mapping?. Neurosci. Biobehav. Rev. 2013, 37:610-624.
15. Gevers S., van Osch M.J., Bokkers R.P., Kies D.A., Teeuwisse W.M., Majoie C.B., Hendrikse J., Nederveen A.J. Intra- and multicenter reproducibility of pulsed, continuous and pseudo-continuous arterial spin labeling methods for measuring cerebral perfusion. J. Cereb. Blood Flow Metab. 2011, 31:1706-1715.
16. Han Y., Wang J., Zhao Z., Min B., Lu J., Li K., He Y., Jia J. Frequency-dependent changes in the amplitude of low-frequency fluctuations in amnestic mild cognitive impairment: a resting-state fMRI study. Neuroimage 2011, 55:287-295.
17. Hermes M., Hagemann D., Britz P., Lieser S., Rock J., Naumann E., Walter C. Reproducibility of continuous arterial spin labeling perfusion MRI after 7 weeks. MAGMA 2007, 20:103-115.
18. Hodkinson D.J., Krause K., Khawaja N., Renton T.F., Huggins J.P., Vennart W., Thacker M.A., Mehta M.A., Zelaya F.O., Williams S.C., Howard M.A. Quantifying the test-retest reliability of cerebral blood flow measurements in a clinical model of on-going post-surgical pain: a study using pseudo-continuous arterial spin labelling. Neurol. Clin. 2013, 3:301-310.
19. Hogan M.J., Kelly C.A., Verrier D., Newell J., Hasher L., Robertson I.H. Optimal time-of-day and consolidation of learning in younger and older adults. Exp. Aging Res. 2009, 35:107-128.
20. Huang D., Wu B., Shi K., Ma L., Cai Y., Lou X. Reliability of three-dimensional pseudo-continuous arterial spin labeling MR imaging for measuring visual cortex perfusion on two 3T scanners. PLoS One 2013, 8:e79471.
21. Jahng G.H., Song E., Zhu X.P., Matson G.B., Weiner M.W., Schuff N. Human brain: reliability and reproducibility of pulsed arterial spin-labeling perfusion MR imaging. Radiology 2005, 234:909-916.
22. Jain V., Duda J., Avants B., Giannetta M., Xie S.X., Roberts T., Detre J.A., Hurt H., Wehrli F.W., Wang D.J. Longitudinal reproducibility and accuracy of pseudo-continuous arterial spin-labeled perfusion MR imaging in typically developing children. Radiology 2012, 263:527-536.
23. Jann K., Gee D.G., Kilroy E., Schwab S., Smith R.X., Cannon T.D., Wang D.J. Functional connectivity in BOLD and CBF data: similarity and reliability of resting brain networks. Neuroimage 2014, 106C:111-122.
24. Jann K., Gee D.G., Kilroy E., Schwab S., Smith R.X., Cannon T.D., Wang D.J. Functional connectivity in BOLD and CBF data: similarity and reliability of resting brain networks. Neuroimage 2015, 106:111-122.
25. Jao T., Vertes P.E., Alexander-Bloch A.F., Tang I.N., Yu Y.C., Chen J.H., Bullmore E.T. Volitional eyes opening perturbs brain dynamics and functional connectivity regardless of light input. Neuroimage 2013, 69:21-34.
26. Kublbock M., Woletz M., Hoflich A., Sladky R., Kranz G.S., Hoffmann A., Lanzenberger R., Windischberger C. Stability of low-frequency fluctuation amplitudes in prolonged resting-state fMRI. Neuroimage 2014, 103C:249-257.
27. Li X., Wang D., Auerbach E.J., Moeller S., Ugurbil K., Metzger G.J. Theoretical and experimental evaluation of multi-band EPI for high-resolution whole brain pCASL imaging. Neuroimage 2015, 106:170-181.
28. Liang X., Zou Q., He Y., Yang Y. Coupling of functional connectivity and regional cerebral blood flow reveals a physiological basis for network hubs of the human brain. Proc. Natl. Acad. Sci. U. S. A. 2013, 110:1929-1934.
29. Liu D., Dong Z., Zuo X., Wang J., Zang Y. Eyes-open/eyes-closed dataset sharing for reproducibility evaluation of resting state FMRI data analysis methods. Neuroinformatics 2013, 11:469-476.
30. Lui S., Huang X., Chen L., Tang H., Zhang T., Li X., Li D., Kuang W., Chan R.C., Mechelli A., Sweeney J.A., Gong Q. High-field MRI reveals an acute impact on brain function in survivors of the magnitude 8.0 earthquake in China. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:15412-15417.
31. Maleki N., Dai W., Alsop D.C. Optimization of background suppression for arterial spin labeling perfusion imaging. MAGMA 2012, 25:127-133.
32. Marcus E. Credibility and reproducibility. Cancer Cell 2014, 26:771-772.
33. May C.P., Hasher L., Foong N. Implicit memory, age, and time of day: paradoxical priming effects. Psychol. Sci. 2005, 16:96-100.
34. McGraw K.O., Wong S. Forming inferences about some intraclass correlation coefficients. Psychol. Methods 1996, 1:30.
35. Patriat R., Molloy E.K., Meier T.B., Kirk G.R., Nair V.A., Meyerand M.E., Prabhakaran V., Birn R.M. The effect of resting condition on resting-state fMRI reliability and consistency: a comparison between resting with eyes open, closed, and fixated. Neuroimage 2013, 78:463-473.
36. Petersen E.T., Mouridsen K., Golay X., all named co-authors of the, Q.t.-r.s. The QUASAR reproducibility study, part II: results from a multi-center arterial spin labeling test-retest study. Neuroimage 2010, 49:104-113.
37. Searle S.R., Casella G., McCulloch C.E. Variance Components 1992, John Wiley & Sons, INC., New York.
38. Shehzad Z., Kelly A.M., Reiss P.T., Gee D.G., Gotimer K., Uddin L.Q., Lee S.H., Margulies D.S., Roy A.K., Biswal B.B., Petkova E., Castellanos F.X., Milham M.P. The resting brain: unconstrained yet reliable. Cereb. Cortex 2009, 19:2209-2229.
39. Shrout P.E., Fleiss J.L. Intraclass correlations: uses in assessing rater reliability. Psychol. Bull. 1979, 86:420-428.
40. Smith S.M., Vidaurre D., Beckmann C.F., Glasser M.F., Jenkinson M., Miller K.L., Nichols T.E., Robinson E.C., Salimi-Khorshidi G., Woolrich M.W., Barch D.M., Ugurbil K., Van Essen D.C. Functional connectomics from resting-state fMRI. Trends Cogn. Sci. 2013, 17:666-682.
41. Tagliazucchi E., Laufs H. Decoding wakefulness levels from typical fMRI resting-state data reveals reliable drifts between wakefulness and sleep. Neuron 2014, 82:695-708.
42. Van Dijk K.R., Sabuncu M.R., Buckner R.L. The influence of head motion on intrinsic functional connectivity MRI. Neuroimage 2012, 59:431-438.
43. Vidorreta M., Wang Z., Rodriguez I., Pastor M.A., Detre J.A., Fernandez-Seara M.A. Comparison of 2D and 3D single-shot ASL perfusion fMRI sequences. Neuroimage 2013, 66:662-671.
44. Wang Z. Improving cerebral blood flow quantification for arterial spin labeled perfusion MRI by removing residual motion artifacts and global signal fluctuations. Magn. Reson. Imaging 2012, 30:1409-1415.
45. Wang Y., Saykin A.J., Pfeuffer J., Lin C., Mosier K.M., Shen L., Kim S., Hutchins G.D. Regional reproducibility of pulsed arterial spin labeling perfusion imaging at 3T. Neuroimage 2011, 54:1188-1195.
46. Wang Z., Yan C., Zhao C., Qi Z., Zhou W., Lu J., He Y., Li K. Spatial patterns of intrinsic brain activity in mild cognitive impairment and Alzheimer's disease: a resting-state functional MRI study. Hum. Brain Mapp. 2011, 32:1720-1740.
47. Wu W.C., Fernandez-Seara M., Detre J.A., Wehrli F.W., Wang J. A theoretical and experimental investigation of the tagging efficiency of pseudocontinuous arterial spin labeling. Magn. Reson. Med. 2007, 58:1020-1027.
48. Wu B., Lou X., Wu X., Ma L. Intra- and interscanner reliability and reproducibility of 3D whole-brain pseudo-continuous arterial spin-labeling MR perfusion at 3T. J. Magn. Reson. Imaging 2014, 39:402-409.
49. Yan C., Liu D., He Y., Zou Q., Zhu C., Zuo X., Long X., Zang Y. Spontaneous brain activity in the default mode network is sensitive to different resting-state conditions with limited cognitive load. PLoS One 2009, 4:e5743.
50. Yan C.G., Cheung B., Kelly C., Colcombe S., Craddock R.C., Di Martino A., Li Q., Zuo X.N., Castellanos F.X., Milham M.P. A comprehensive assessment of regional variation in the impact of head micromovements on functional connectomics. Neuroimage 2013, 76:183-201.
51. Yan C.G., Craddock R.C., Zuo X.N., Zang Y.F., Milham M.P. Standardizing the intrinsic brain: towards robust measurement of inter-individual variation in 1000 functional connectomes. Neuroimage 2013, 80:246-262.
52. Yang H., Long X.Y., Yang Y., Yan H., Zhu C.Z., Zhou X.P., Zang Y.F., Gong Q.Y. Amplitude of low frequency fluctuation within visual areas revealed by resting-state functional MRI. Neuroimage 2007, 36:144-152.
53. Yu R., Chien Y.L., Wang H.L., Liu C.M., Liu C.C., Hwang T.J., Hsieh M.H., Hwu H.G., Tseng W.Y. Frequency-specific alternations in the amplitude of low-frequency fluctuations in schizophrenia. Hum. Brain Mapp. 2014, 35:627-637.
54. Yuan B.K., Wang J., Zang Y.F., Liu D.Q. Amplitude differences in high-frequency fMRI signals between eyes open and eyes closed resting states. Front. Hum. Neurosci. 2014, 8:503.
55. Zang Y.F., He Y., Zhu C.Z., Cao Q.J., Sui M.Q., Liang M., Tian L.X., Jiang T.Z., Wang Y.F. Altered baseline brain activity in children with ADHD revealed by resting-state functional MRI. Brain Dev. 2007, 29:83-91.
56. Zhu L., Fan Y., Zou Q., Wang J., Gao J.H., Niu Z. Temporal reliability and lateralization of the resting-state language network. PLoS One 2014, 9:e85880.
57. Zou Q.H., Zhu C.Z., Yang Y., Zuo X.N., Long X.Y., Cao Q.J., Wang Y.F., Zang Y.F. An improved approach to detection of amplitude of low-frequency fluctuation (ALFF) for resting-state fMRI: fractional ALFF. J. Neurosci. Methods 2008, 172:137-141.
58. Zou Q., Long X., Zuo X., Yan C., Zhu C., Yang Y., Liu D., He Y., Zang Y. Functional connectivity between the thalamus and visual cortex under eyes closed and eyes open conditions: a resting-state fMRI study. Hum. Brain Mapp. 2009, 30:3066-3078.
59. Zou Q., Gu H., Wang D.J., Gao J.H., Yang Y. Quantification of load dependent brain activity in parametric N-back working memory tasks using pseudo-continuous arterial spin labeling (pCASL) perfusion imaging. J. Cogn. Sci.(Seoul) 2011, 12:127-210.
60. Zou Q., Ross T.J., Gu H., Geng X., Zuo X.N., Hong L.E., Gao J.H., Stein E.A., Zang Y.F., Yang Y. Intrinsic resting-state activity predicts working memory brain activation and behavioral performance. Hum. Brain Mapp. 2013, 34:3204-3215.
61. Zou Q., Yuan B.K., Gu H., Liu D., Wang D.J., Gao J.H., Yang Y., Zang Y.F. Detecting static and dynamic differences between eyes-closed and eyes-open resting states using ASL and BOLD fMRI. PLoS One 2015, 10:e0121757.
62. Zuo X.N., Xing X.X. Test-retest reliabilities of resting-state FMRI measurements in human brain functional connectomics: a systems neuroscience perspective. Neurosci. Biobehav. Rev. 2014, 45:100-118.
63. Zuo X.N., Di Martino A., Kelly C., Shehzad Z.E., Gee D.G., Klein D.F., Castellanos F.X., Biswal B.B., Milham M.P. The oscillating brain: complex and reliable. Neuroimage 2010, 49:1432-1445.
64. Zuo X.N., Kelly C., Adelstein J.S., Klein D.F., Castellanos F.X., Milham M.P. Reliable intrinsic connectivity networks: test-retest evaluation using ICA and dual regression approach. Neuroimage 2010, 49:2163-2177.
65. Zuo X.N., Kelly C., Di Martino A., Mennes M., Margulies D.S., Bangaru S., Grzadzinski R., Evans A.C., Zang Y.F., Castellanos F.X., Milham M.P. Growing together and growing apart: regional and sex differences in the lifespan developmental trajectories of functional homotopy. J. Neurosci. 2010, 30:15034-15043.
66. Zuo X.N., Xu T., Jiang L., Yang Z., Cao X.Y., He Y., Zang Y.F., Castellanos F.X., Milham M.P. Toward reliable characterization of functional homogeneity in the human brain: preprocessing, scan duration, imaging resolution and computational space. Neuroimage 2013, 65:374-386.
67. Zuo X.-N., Anderson J.S., Bellec P., Birn R.M., Biswal B.B., Blautzik J., Breitner J.C.S., Buckner R.L., Calhoun V.D., Castellanos F.X., Chen A., Chen B., Chen J., Chen X., Colcombe S.J., Courtney W., Craddock R.C., Di Martino A., Dong H.-M., Fu X., Gong Q., Gorgolewski K.J., Han Y., He Y., He Y., Ho E., Holmes A., Hou X.-H., Huckins J., Jiang T., Jiang Y., Kelley W., Kelly C., King M., LaConte S.M., Lainhart J.E., Lei X., Li H.-J., Li K., Li K., Lin Q., Liu D., Liu J., Liu X., Liu Y., Lu G., Lu J., Luna B., Luo J., Lurie D., Mao Y., Margulies D.S., Mayer A.R., Meindl T., Meyerand M.E., Nan W., Nielsen J.A., O'Connor D., Paulsen D., Prabhakaran V., Qi Z., Qiu J., Shao C., Shehzad Z., Tang W., Villringer A., Wang H., Wang K., Wei D., Wei G.-X., Weng X.-C., Wu X., Xu T., Yang N., Yang Z., Zang Y.-F., Zhang L., Zhang Q., Zhang Z., Zhang Z., Zhao K., Zhen Z., Zhou Y., Zhu X.-T., Milham M.P. An open science resource for establishing reliability and reproducibility in functional connectomics. Sci. Data 2014, 1.