Being human is a gut feeling

Microbiome

Volumn 3, Issue 1, 2015, Pages

  Hutter, Thiago ^a   Gimbert, Carine ^a,b   Bouchard, Frédéric ^a   Lapointe, François Joseph ^a  

^a UNIVERSITÉ DE MONTRÉAL   (Canada)

^b UNIVERSITÉ DE LYON   (France)

Author keywords

Biological individuality; Functional integration; Homo sapiens; Super individual

Indexed keywords

XENOBIOTIC AGENT;

ARTICLE; BACTEROIDETES; BIOLOGY; DIET SUPPLEMENTATION; EVOLUTIONARY ADAPTATION; FERMENTATION; FIRMICUTES; INTESTINE FLORA; METAGENOMICS; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MICROBIAL GENETICS; MICROHABITAT; NONHUMAN; ORGANISMAL INTERACTION; PRIORITY JOURNAL; SPECIES DIFFERENTIATION; TAXONOMIC IDENTIFICATION;

BACTERIA (MICROORGANISMS); HOMO SAPIENS;

EID: 84938484772     PISSN: None     EISSN: 20492618     Source Type: Journal    
DOI: 10.1186/s40168-015-0076-7     Document Type: Article

References (36)

1. Turner JS. The extended organism: the physiology of animal-built structures 2000, Harvard University Press, Cambridge.
2. Turner JS. Extended phenotypes and extended organisms. Biol Philos 2004, 19:327-52. 10.1023/B:BIPH.0000036115.65522.a1.
3. Turner JS. Superorganisms and superindividuality. From groups to individuals: evolution and emerging individuality 2013, 219-41. MIT Press, Cambridge, Bouchard F, Huneman P.
4. Hölldobler B, Wilson EO. The superorganism: the beauty, elegance, and strangeness of insect societies 2009, WW Norton, New York.
5. O'Malley MA, Dupré J. Size doesn't matter: towards a more inclusive philosophy of biology. Biol Philos 2007, 22:155-91. 10.1007/s10539-006-9031-0.
6. O'Malley MA, Dupré J. Towards a philosophy of microbiology. Stud Hist Philos Biol Biomed Sci 2007, 38:775-9. 10.1016/j.shpsc.2007.09.002, 18053932.
7. Pradeu T. The limits of the self: immunology and biological identity 2012, Oxford University Press, Oxford.
8. Smith JM, Szathmary E. The major transitions in evolution 1997, Oxford University Press, Oxford.
9. Wilson RA. Genes and the agents of life: the individual in the fragile sciences biology 2005, Cambridge University Press, Cambridge.
10. Wilson J. Biological individuality: the identity and persistence of living entities 2007, Cambridge University Press, Cambridge.
11. Clarke E. The problem of biological individuality. Biol Theory 2010, 5:312-25. 10.1162/BIOT_a_00068.
12. Bouchard F, Huneman P. From groups to individuals: evolution and emerging individuality 2013, MIT Press, Cambridge.
13. Godfrey-Smith P. Darwinian populations and natural selection 2009, Oxford University Press, New York.
14. Gligorov N, Azzouni J, Lackey DP, Zweig A. Personal identity: our microbes, ourselves. The human microbiome: ethical, legal, and social concerns 2013, 55-70. Oxford University Press, New York, Rhodes R, Gligorov N, Schwab AP.
15. Wilson EO. The insect societies 1971, Harvard University Press, Cambridge.
16. Wilson DS, Sober E. Reviving the superorganism. J Theor Biol 1989, 136:337-56. 10.1016/S0022-5193(89)80169-9, 2811397.
17. Dupré J, O'Malley MA. Varieties of living things: life at the intersection of lineage and metabolism. Philos Theor Biol 2009, 1:1-25.
18. Van Valen LM. Three paradigms of evolution. Evol Theor 1989, 9:1-17.
19. Thoday JM. Components of fitness. Sym Soc Exp Biol 1953, 7:96-113.
20. Bouchard F. Causal processes, fitness, and the differential persistence of lineages. Philos Sci 2008, 75:560-70. 10.1086/594507.
21. Bouchard F. Darwinism without populations: a more inclusive understanding of the "Survival of the Fittest". Stud Hist Philos Biol Biomed Sci 2011, 42:106-14. 10.1016/j.shpsc.2010.11.002, 21300322.
22. Bouchard F. What is a symbiotic superindividual and how do you measure its fitness?. From groups to individuals: evolution and emerging individuality 2013, 243-63. MIT Press, Cambridge, Bouchard F, Huneman P.
23. Zilber-Rosenberg I, Rosenberg E. Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution. FEMS Microbiol Rev 2008, 32:723-35. 10.1111/j.1574-6976.2008.00123.x, 18549407.
24. Godfrey-Smith P. Darwinian individuals. From groups to individuals: evolution and emerging individuality 2013, 17-36. MIT Press, Cambridge, Bouchard F, Huneman P.
25. Structure, function and diversity of the healthy human microbiome. Nature 2012, 486:207-14. 10.1038/nature11234.
26. A framework for human microbiome research. Nature 2012, 486:215-21. 10.1038/nature11209.
27. Zhou Y, Mihindukulasuriya KA, Gao H, La Rosa PS, Wylie KM, Martin JC, et al. Exploration of bacterial community classes in major human habitats. Genome Biol 2014, 15:R66. 10.1186/gb-2014-15-5-r66, 24887286.
28. Tremaroli V, Bäckhed F. Functional interactions between the gut microbiota and host metabolism. Nature 2012, 489:242-9. 10.1038/nature11552, 22972297.
29. Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010, 464:59-65. 10.1038/nature08821, 20203603.
30. Rosenberg E, Zilber-Rosenberg I. Symbiosis and development: the hologenome concept. Birth Defects Res C Embryo Today 2011, 93:56-66. 10.1002/bdrc.20196, 21425442.
31. Schubert AM, Rogers MA, Ring C, Mogle J, Petrosino JP, Young VB, et al. Microbiome data distinguish patients with Clostridium difficile infection and non-C. difficile-associated diarrhea from healthy controls. MBio 2014, 5:e01021-14. 10.1128/mBio.01021-14, 24803517.
32. Mitchell BG, Gardner A. Mortality and Clostridium difficile infection: a review. Antimicrob Resist Infect Control 2012, 1:20. 10.1186/2047-2994-1-20, 22958425.
33. Brucker RM, Bordenstein SR. Speciation by symbiosis. Trends Ecol Evol 2012, 27:443-51. 10.1016/j.tree.2012.03.011, 22541872.
34. Brucker RM, Bordenstein SR. The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia. Science 2013, 341:667-9. 10.1126/science.1240659, 23868918.
35. Rosenberg E, Zilber-Rosenberg I. The hologenome concept. Beneficial microorganisms in multicellular life forms 2011, 323-40. Springer, Berlin, Rosenberg E, Gophna U, 10.1007/978-3-642-21680-0.
36. Rosenberg E, Zilber-Rosenberg I. The evolution of holobionts. The hologenome concept: human, animal and plant microbiota 2013, 109-28. Springer, New York, Rosenberg E, Zilber-Rosenberg I, 10.1007/978-3-319-13904-3_8.