Proteomic and gene expression analysis of zebrafish brain undergoing continuous light/dark stress

Journal of Sleep Research

Volumn 24, Issue 4, 2015, Pages 458-465

  Purushothaman, Sruthi ^a   Saxena, Sandeep ^a   Meghah, Vupalapathy ^a   Meena Lakshmi, Mula G ^a   Singh, Sachin K ^a   Brahmendra Swamy, Cherukuvada V ^a   Idris, Mohammed M ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

2DE; DIGE; Network Pathway

Indexed keywords

CASEIN KINASE IEPSILON; CRYPTOCHROME 1; CRYPTOCHROME 2; PEROXIREDOXIN; PROTEOME; TRANSCRIPTION FACTOR ARNTL; TRANSCRIPTOME; ZEBRAFISH PROTEIN;

ADULT; ARTICLE; BRAIN; CIRCADIAN RHYTHM; DARK STRESS; FOURIER TRANSFORM MASS SPECTROMETRY; GENE EXPRESSION; LIGHT DARK CYCLE; LIGHT STRESS; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEOMICS; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STRESS; TWO DIMENSIONAL GEL ELECTROPHORESIS; ZEBRA FISH; ANIMAL; ANIMAL MODEL; DARKNESS; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; LIGHT; MALE; MASS SPECTROMETRY; METABOLISM; PHOTOPERIODICITY; PHYSIOLOGICAL STRESS; RADIATION RESPONSE; SLEEP; TANDEM MASS SPECTROMETRY; WAKEFULNESS;

ANIMALS; BRAIN; CIRCADIAN RHYTHM; DARKNESS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; LIGHT; MALE; MODELS, ANIMAL; PHOTOPERIOD; PROTEOME; PROTEOMICS; REAL-TIME POLYMERASE CHAIN REACTION; SLEEP; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STRESS, PHYSIOLOGICAL; TANDEM MASS SPECTROMETRY; WAKEFULNESS; ZEBRAFISH; ZEBRAFISH PROTEINS;

EID: 84938211996     PISSN: 09621105     EISSN: 13652869     Source Type: Journal    
DOI: 10.1111/jsr.12287     Document Type: Article

References (42)

1. Aschoff, J. Exogenous and endogenous components in circadian rhythms. Cold Spring Harb. Symp. Quant. Biol., 1960, 25: 11-28.
2. Barger, L. K., Lockley, S. W., Rajaratnam, S. M. and Landrigan, C. P. Neurobehavioral, health, and safety consequences associated with shift work in safety-sensitive professions. Curr. Neurol. Neurosci. Rep., 2009, 9: 155-164.
3. Brand, M., Granato, M. and Nüsslein-Volhard, C. Keeping and raising zebrafish. In: C. Nüsslein-Volhard and R. Dahm (Eds) Zebrafish: A Practical Approach. Oxford University Press, New York, 2002: 7-38.
4. Bustin, S. A., Benes, V., Garson, J. A. et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin. Chem., 2009, 55: 611-622.
5. Cahill, G. M. Clock mechanisms in zebrafish. Cell Tissue Res., 2002, 309: 27-34.
6. Conlon, M., Lightfoot, N. and Kreiger, N. Rotating shift work and risk of prostate cancer. Epidemiology, 2007, 18: 182-183.
7. Falcon, J., Gothilf, Y., Coon, S. L., Boeuf, G. and Klein, D. C. Genetic, temporal and developmental differences between melatonin rhythm generating systems in the teleost fish pineal organ and retina. J. Neuroendocrinol., 2003, 15: 378-382.
8. Faraco, J. H., Appelbaum, L., Marin, W. et al. Regulation of hypocretin (orexin) expression in embryonic zebrafish. J. Biol. Chem., 2006, 281: 29753-297561.
9. Froy, O. Metabolism and circadian rhythms - implications for obesity. Endocr. Rev., 2010, 31: 1-24.
10. Gerstner, J. R., Lyons, L. C., Wright, K. P. Jr et al. Cycling behavior and memory formation. J. Neurosci., 2009, 29: 12824-12830.
11. Guo, S. Linking genes to brain, behavior and neurological diseases: what can we learn from zebrafish? Genes Brain Behav., 2004, 3: 63-74.
12. Hallmayer, J., Faraco, J., Lin, L. et al. Narcolepsy is strongly associated with the T-cell receptor alpha locus. Nat. Genet., 2009, 41: 708-711.
13. Hendricks, J. C., Finn, S. M., Panckeri, K. A. et al. Rest in Drosophila is a sleep-like state. Neuron, 2000, 25: 129-138.
14. Kaneko, M., Hiroshige, T., Shinsako, J. and Dallman, M. F. Diurnal changes in amplification of hormone rhythms in the adrenocortical system. Am. J. Physiol., 1980, 239: R309-R316.
15. Kaneko, M., Kaneko, K., Shinsako, J. and Dallman, M. F. Adrenal sensitivity to adrenocorticotropin varies diurnally. Endocrinology, 1981, 109: 70-75.
16. Kaslin, J., Nystedt, J. M., Ostergård, M. et al. The orexin/hypocretin system in zebrafish is connected to the aminergic and cholinergic systems. J. Neurosci., 2004, 24: 2678-2689.
17. Merrow, M., Spoelstra, K. and Roenneberg, T. The circadian cycle: daily rhythms from behaviour to genes. EMBO Rep., 2005, 6: 930-935.
18. Moller, M., Lund-Anderson, C., Rovsing, L. et al. Proteomics of the photoneuroendocrine circadian system of the brain. Mass Spectrom. Rev., 2010, 29: 313-325.
19. Morikawa, Y., Nakagawa, H., Miura, K. et al. Effect of shift work on body mass index and metabolic parameters. Scand. J. Work Environ. Health, 2007, 33: 45-50.
20. Mueller, T., Vernier, P. and Wullimann, M. F. The adult central nervous cholinergic system of a neurogenetic model animal, the zebrafish Danio rerio. Brain Res., 2004, 1011(2): 156-69.
21. Ohtake, H., Limprasert, P., Fan, Y. et al. Beta-synuclein gene alterations in dementia with Lewy bodies. Neurology, 2004, 63: 805-811.
22. O'Neill, J. S. and Reddy, A. B. Circadian clocks in human red blood cells. Nature, 2011, 469: 498-503.
23. Oster, H., Damerow, S., Kiessling, S. et al. The circadian rhythm of glucocorticoids is regulated by a gating mechanism residing in the adrenal cortical clock. Cell Metab., 2006, 4: 163-173.
24. Pando, M. P. and Sassone-Corsi, P. Unravelling the mechanism of the vertebrate circadian clock: zebrafish may light the way. BioEssays, 2002, 24: 419-426.
25. Pando, M. P., Pinchak, A. B., Cermakian, N. and Sassone-Corsi, P. A cell-based system that recapitulates the dynamic light dependent regulation of the vertebrate clock. Proc. Natl Acad. Sci. USA, 2001, 98: 10178-10183.
26. Preitner, N., Damiola, F., Lopez-Molina, L. et al. The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator. Cell, 2002, 110: 251-260.
27. Prober, D. A., Rihel, J., Onah, A. A., Sung, R. J. and Schier, A. F. Hypocretin/orexin overexpression induces an insomnia-like phenotype in zebrafish. J. Neurosci., 2006, 26: 13400-13410.
28. Reddy, A. B. and O'Neill, J. S. Healthy clocks, healthy body, healthy mind. Trends Cell Biol., 2009, 20: 36-44.
29. Rihel, J., Prober, D. A., Arvanites, A. et al. Zebrafish behavioral profiling links drugs to biological targets and rest/wake regulation. Science, 2010, 327: 348-351.
30. Saxena, S., Singh, S. K., Lakshmi, M. G. et al. Proteomic analysis of zebrafish caudal fin regeneration. Mol. Cell Proteomics, 2012, 11: M111014118.
31. Schaffner, W. and Weissmann, C. A rapid, sensitive, and specific method for the determination of proteins in dilute solution. Anal. Biochem., 1973, 56: 502-514.
32. Shaw, P. J., Cirelli, C., Greenspan, R. J. and Tononi, G. Correlates of sleep and waking in Drosophila melanogaster. Science, 2000, 287: 1834-1837.
33. Sigurgeirsson, B., Thornorsteinsson, H., Sigmundsdóttir, S. et al. Sleep-wake dynamics under extended light and extended dark conditions in adult zebrafish. Behav. Brain Res., 2013, 256: 377-390.
34. Singh, S. K., Sundaram, C. S., Shanbhag, S. and Idris, M. M. Proteomic profile of zebrafish brain based on two-dimensional gel electrophoresis matrix-assisted laser desorption/ionization MS/MS analysis. Zebrafish, 2010, 7: 169-177.
35. Sorribes, A., Thornorsteinsson, H., Arnardóttir, H. et al. The ontogeny of sleep-wake cycles in zebrafish: a comparison to humans. Front. Neural. Circuits., 2013, 7: 178.
36. Ueda, H. R., Hayashi, S., Chen, W. et al. System-level identification of transcriptional circuits underlying mammalian circadian clocks. Nat. Genet., 2005, 37: 187-192.
37. Weger, B. D., Sahinbas, M., Otto, G. W. et al. The light responsive transcriptome of the zebrafish: function and regulation. PLoS ONE, 2011, 6: e17080.
38. Whitmore, D., Foulkes, N. S., Strähle, U. and Sassone-Corsi, P. Zebrafish Clock rhythmic expression reveals independent peripheral circadian oscillators. Nat. Neurosci., 1998, 1: 701-707.
39. Whitmore, D., Foulkes, N. S. and Sassone-Corsi, P. Light acts directly on organs and cells in culture to set the vertebrate circadian clock. Nature, 2000, 404: 87-91.
40. Yamazaki, S., Numano, R., Abe, M. et al. Resetting central and peripheral circadian oscillators in transgenic rats. Science, 2000, 288: 682-685.
41. Yokogawa, T., Marin, W., Faraco, J. et al. Characterization of sleep in zebrafish and insomnia in hypocretin receptor mutants. PLoS Biol., 2007, 5: e277.
42. Zhdanova, I. V., Wang, S. Y., Leclair, O. U. and Danilova, N. P. Melatonin promotes sleep-like state in zebrafish. Brain Res., 2001, 903: 263-268.