-
1
-
-
84864059917
-
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
-
Achtman, M., Wain, J., Weill, F.-X., Nair, S., Zhou, Z., Sangal, V., Krauland, M. G., Hale, J. L., Harbottle, H. & other authors (2012). Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. PLoS Pathog 8, e1002776
-
(2012)
Plos Pathog
, vol.8
-
-
Achtman, M.1
Wain, J.2
Weill, F.-X.3
Nair, S.4
Zhou, Z.5
Sangal, V.6
Krauland, M.G.7
Hale, J.L.8
Harbottle, H.9
Authors, O.10
-
2
-
-
84879604021
-
Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): Proposal to reclassify E. Nimipressuralis and E. Amnigenus into Lelliottia gen. Nov. As Lelliottia nimipressuralis comb. Nov. And Lelliottia amnigena comb. Nov, respectively, E. Gergoviae and E. Pyrinus into Pluralibacter gen. Nov. As Pluralibacter gergoviae comb. Nov. And Pluralibacter pyrinus comb. Nov, respectively, E. Cowanii, E. Radicincitans, E. Oryzae and E. Arachidis into Kosakonia gen. Nov. As Kosakonia cowanii comb. Nov, Kosakonia radicincitans comb. Nov, Kosakonia oryzae comb. Nov. And Kosakonia arachidis comb. Nov, respectively, and E. Turicensis, E. Helveticus and E. Pulveris into Cronobacter as Cronobacter zurichensis nom. Nov, Cronobacter helveticus comb. Nov. And Cronobacter pulveris comb. Nov, respectively, and emended description of the genera Enterobacter and Cronobacter
-
Brady, C., Cleenwerck, I., Venter, S., Coutinho, T. & De Vos, P. (2013). Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): proposal to reclassify E. nimipressuralis and E. amnigenus into Lelliottia gen. nov. as Lelliottia nimipressuralis comb. nov. and Lelliottia amnigena comb. nov., respectively, E. gergoviae and E. pyrinus into Pluralibacter gen. nov. as Pluralibacter gergoviae comb. nov. and Pluralibacter pyrinus comb. nov., respectively, E. cowanii, E. radicincitans, E. oryzae and E. arachidis into Kosakonia gen. nov. as Kosakonia cowanii comb. nov., Kosakonia radicincitans comb. nov., Kosakonia oryzae comb. nov. and Kosakonia arachidis comb. nov., respectively, and E. turicensis, E. helveticus and E. pulveris into Cronobacter as Cronobacter zurichensis nom. nov., Cronobacter helveticus comb. nov. and Cronobacter pulveris comb. nov., respectively, and emended description of the genera Enterobacter and Cronobacter. Syst Appl Microbiol 36, 309–319
-
(2013)
Syst Appl Microbiol
, vol.36
, pp. 309-319
-
-
Brady, C.1
Cleenwerck, I.2
Venter, S.3
Coutinho, T.4
De Vos, P.5
-
3
-
-
33947592213
-
Family I. Enterobacteriaceae Rahn 1937, Nom. Fam. Cons. Opin. 15, Jud. Comm. 1958a, 73; Ewing, Farmer, and Brenner 1980, 674; Judicial Commission 1981, 104
-
2nd edn, Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer
-
Brenner, D. J. & Farmer, J. J., III (2005). Family I. Enterobacteriaceae Rahn 1937, Nom. Fam. Cons. Opin. 15, Jud. Comm. 1958a, 73; Ewing, Farmer, and Brenner 1980, 674; Judicial Commission 1981, 104. In Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 2B, pp. 587–607. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
-
(2005)
Bergey’s Manual of Systematic Bacteriology
, vol.2B
, pp. 587-607
-
-
Brenner, D.J.1
Farmer, J.J.2
-
4
-
-
1842362290
-
Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
-
Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801–4805
-
(1978)
Proc Natl Acad Sci U S A
, vol.75
, pp. 4801-4805
-
-
Brosius, J.1
Palmer, M.L.2
Kennedy, P.J.3
Noller, H.F.4
-
5
-
-
84978219806
-
-
Comité de l’Antibiogramme de la Société Française de Microbiologie & European Committee on Antimicrobial Susceptibility Testing (CA-SFM EUCAST)
-
Comité de l’Antibiogramme de la Société Française de Microbiologie & European Committee on Antimicrobial Susceptibility Testing (CA-SFM EUCAST). (2013). European Society for Clinical Microbiology and Infections Diseases. http://www.sfm-microbiologie.org/
-
(2013)
European Society for Clinical Microbiology and Infections Diseases
-
-
-
6
-
-
60849083234
-
Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing
-
Delétoile, A., Decré, D., Courant, S., Passet, V., Audo, J., Grimont, P., Arlet, G. & Brisse, S. (2009). Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing. J Clin Microbiol 47, 300–310
-
(2009)
J Clin Microbiol
, vol.47
, pp. 300-310
-
-
Delétoile, A.1
Decré, D.2
Courant, S.3
Passet, V.4
Audo, J.5
Grimont, P.6
Arlet, G.7
Brisse, S.8
-
7
-
-
33846555715
-
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
-
Goris, J., Konstantinidis, K. T., Klappenbach, J. A., Coenye, T., Vandamme, P. & Tiedje, J. M. (2007). DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57, 81–91
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 81-91
-
-
Goris, J.1
Konstantinidis, K.T.2
Klappenbach, J.A.3
Coenye, T.4
Vandamme, P.5
Tiedje, J.M.6
-
8
-
-
64049084455
-
The genus Serratia
-
Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer
-
Grimont, F. & Grimont, P. A. D. (2006). The genus Serratia. In The Prokaryotes, vol. 6, pp. 219–244. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
-
(2006)
The Prokaryotes
, vol.6
, pp. 219-244
-
-
Grimont, F.1
Grimont, P.2
-
9
-
-
0020678786
-
Ewingella americana gen. Nov, sp.Nov, a new Enterobacteriaceae isolated from clinical specimens
-
Grimont, P. A. D., Farmer, J. J., III, Grimont, F., Asbury, M. A., Brenner, D. J. & Deval, C. (1983). Ewingella americana gen.nov., sp.nov., a new Enterobacteriaceae isolated from clinical specimens. Ann Microbiol (Paris) 134A, 39–52
-
(1983)
Ann Microbiol (Paris)
, vol.134A
, pp. 39-52
-
-
Grimont, P.1
Farmer, J.J.2
Grimont, F.3
Asbury, M.A.4
Brenner, D.J.5
Deval, C.6
-
10
-
-
84903210306
-
Validation of antibiotic susceptibility testing guidelines in a routine clinical microbiology laboratory exemplifies general key challenges in setting clinical breakpoints
-
Hombach, M., Courvalin, P. & Bö ttger, E. C. (2014). Validation of antibiotic susceptibility testing guidelines in a routine clinical microbiology laboratory exemplifies general key challenges in setting clinical breakpoints. Antimicrob Agents Chemother 58, 3921–3926
-
(2014)
Antimicrob Agents Chemother
, vol.58
, pp. 3921-3926
-
-
Hombach, M.1
Courvalin, P.2
Bö Ttger, E.C.3
-
11
-
-
0029157576
-
The genus Methylophaga, a new line of descent within phylogenetic branch c of Proteobacteria
-
Janvier, M. & Grimont, P. A. D. (1995). The genus Methylophaga, a new line of descent within phylogenetic branch c of Proteobacteria. Res Microbiol 146, 543–550
-
(1995)
Res Microbiol
, vol.146
, pp. 543-550
-
-
Janvier, M.1
Grimont, P.2
-
12
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
Konstantinidis, K. T. & Tiedje, J. M. (2005a). Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A 102, 2567–2572
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
13
-
-
24944587193
-
Towards a genomebased taxonomy for prokaryotes
-
Konstantinidis, K. T. & Tiedje, J. M. (2005b). Towards a genomebased taxonomy for prokaryotes. J Bacteriol 187, 6258–6264
-
(2005)
J Bacteriol
, vol.187
, pp. 6258-6264
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
14
-
-
13144252236
-
Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
-
Maiden, M. C., Bygraves, J. A., Feil, E., Morelli, G., Russell, J. E., Urwin, R., Zhang, Q., Zhou, J., Zurth, K. & other authors (1998). Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95, 3140–3145
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 3140-3145
-
-
Maiden, M.C.1
Bygraves, J.A.2
Feil, E.3
Morelli, G.4
Russell, J.E.5
Urwin, R.6
Zhang, Q.7
Zhou, J.8
Zurth, K.9
Authors, O.10
-
15
-
-
0030669211
-
RpoB sequence analysis as a novel basis for bacterial identification
-
Mollet, C., Drancourt, M. & Raoult, D. (1997). rpoB sequence analysis as a novel basis for bacterial identification. Mol Microbiol 26, 1005–1011
-
(1997)
Mol Microbiol
, vol.26
, pp. 1005-1011
-
-
Mollet, C.1
Drancourt, M.2
Raoult, D.3
-
16
-
-
51849145126
-
Genomic diversity within the Enterobacter cloacae complex
-
Paauw, A., Caspers, M. P. M., Schuren, F. H. J., Leverstein-van Hall, M. A., Delétoile, A., Montijn, R. C., Verhoef, J. & Fluit, A. C. (2008). Genomic diversity within the Enterobacter cloacae complex. PLoS ONE 3, e3018
-
(2008)
Plos ONE
, vol.3
-
-
Paauw, A.1
Caspers, M.2
Schuren, F.3
Leverstein-Van Hall, M.A.4
Delétoile, A.5
Montijn, R.C.6
Verhoef, J.7
Fluit, A.C.8
-
17
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter, M. & Rosselló-Móra, R. (2009). Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106, 19126–19131
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
18
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
19
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
Talavera, G. & Castresana, J. (2007). Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56, 564–577
-
(2007)
Syst Biol
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
20
-
-
41849121236
-
Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences
-
Tayeb, L. A., Lefevre, M., Passet, V., Diancourt, L., Brisse, S. & Grimont, P. A. D. (2008). Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences. Res Microbiol 159, 169–177
-
(2008)
Res Microbiol
, vol.159
, pp. 169-177
-
-
Tayeb, L.A.1
Lefevre, M.2
Passet, V.3
Diancourt, L.4
Brisse, S.5
Grimont, P.6
-
21
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673–4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
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