Prescribed nanoparticle cluster architectures and low-dimensional arrays built using octahedral DNA origami frames

Nature Nanotechnology

Volumn 10, Issue 7, 2015, Pages 637-644

  Tian, Ye ^a   Wang, Tong ^a   Liu, Wenyan ^a   Xin, Huolin L ^a   Li, Huilin ^a,b   Ke, Yonggang ^c,d,e,f   Shih, William M ^c,d,e   Gang, Oleg ^a  

^a BROOKHAVEN NATIONAL LABORATORY   (United States)

^b STONY BROOK UNIVERSITY   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

^d DANA FARBER CANCER INSTITUTE   (United States)

^e HARVARD UNIVERSITY   (United States)

^f Emory University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ELECTRON MICROSCOPES;

CRYO-ELECTRON MICROSCOPY; NANOPARTICLE CLUSTERS; PARTICLE ARRANGEMENTS; PARTICLE COMPOSITION; PARTICLE PLACEMENT; TAILORED PROPERTIES; THREE-DIMENSIONAL NANOPARTICLES; TWO-DIMENSIONAL ARRAYS;

NANOPARTICLES;

COMPLEMENTARY DNA; DNA; GOLD NANOPARTICLE; NANOPARTICLE; OCTAHEDRAL DNA; UNCLASSIFIED DRUG; NANOCOMPOSITE; DNA A; SINGLE STRANDED DNA;

ARTICLE; CHIRALITY; CRYOELECTRON MICROSCOPY; DENSITY; DNA SEQUENCE; DNA STRUCTURE; DNA TEMPLATE; ELECTRON MICROSCOPY; HISTOGRAM; MOLECULAR RECOGNITION; PARTICLE SIZE; PRIORITY JOURNAL; RADIATION SCATTERING; SURFACE PROPERTY; TRANSMISSION ELECTRON MICROSCOPY; X RAY CRYSTALLOGRAPHY; CHEMISTRY; CONFORMATION; CRYSTALLIZATION; MATERIALS TESTING; PROCEDURES; THREE DIMENSIONAL PRINTING; ULTRASTRUCTURE; CLUSTER ANALYSIS; DNA ORIGAMI OCTAHEDRON; NANOARRAY;

CRYSTALLIZATION; DNA; MATERIALS TESTING; NANOCOMPOSITES; NUCLEIC ACID CONFORMATION; PARTICLE SIZE; PRINTING, THREE-DIMENSIONAL;

EID: 84937906559     PISSN: 17483387     EISSN: 17483395     Source Type: Journal    
DOI: 10.1038/nnano.2015.105     Document Type: Article

References (45)

1. Halverson J. D. & Tkachenko A. V. DNA-programmed mesoscopic architecture. Phys. Rev. E 87, 062310 (2013
2. Zeravcic Z. & Brenner M. P. Self-replicating colloidal clusters. Proc. Natl Acad. Sci. USA 111, 1748-1753 (2013
3. Maye M. M., Gang O. & Cotlet M. Photoluminescence enhancement in CdSe/ZnS-DNA linked-Au nanoparticle heterodimers probed by single molecule spectroscopy. Chem. Commun. 46, 6111-6113 (2010
4. Yan W., et al. Self-assembly of chiral nanoparticle pyramids with strong R/S optical activity. J. Am. Chem. Soc. 134, 15114-15121 (2012
5. Fan J. A., et al. Plasmonic mode engineering with templated self-assembled nanoclusters. Nano Lett. 12, 5318-5324 (2012
6. Hiroi K., Komatsu K. & Sato T. Superspin glass originating from dipolar interaction with controlled interparticle distance among gamma-Fe2O3 nanoparticles with silica shells. Phys. Rev. B 83, 224423 (2011
7. Govorov A. O., Fan Z., Hernandez P., Slocik J. M. & Naik R. R. Theory of circular dichroism of nanomaterials comprising chiral molecules and nanocrystals: plasmon enhancement, dipole interactions, and dielectric effects. Nano Lett. 10, 1374-1382 (2010
8. Kuzyk A., et al. DNA-based self-assembly of chiral plasmonic nanostructures with tailored optical response. Nature 483, 311-314 (2012
9. Barrow S. J., Wei X., Baldauf J. S., Funston A. M. & Mulvaney P. The surface plasmon modes of self-assembled gold nanocrystals. Nature Commun. 3, 1-9 (2012
10. Ruzicka B., et al. Observation of empty liquids and equilibrium gels in a colloidal clay. Nature Mater. 10, 56-60 (2011
11. Wang Y., et al. Colloids with valence and specific directional bonding. Nature 491, 51-56 (2012
12. Chen Q., et al. Supracolloidal reaction kinetics of janus spheres. Science 331, 199-202 (2011
13. Mastroianni A. J., Claridge S. A. & Alivisatos A. P. Pyramidal and chiral groupings of gold nanocrystals assembled using DNA scaffolds. J. Am. Chem. Soc. 131, 8455-8459 (2009
14. Klinkova A., Thérien-Aubin H., Choueiri R. M., Rubinstein M. & Kumacheva E. Colloidal analogs of molecular chain stoppers. Proc. Natl Acad. Sci. USA 110, 18775-18779 (2013
15. Kim, J-W., Kim, J-H. & Deaton R. DNA-linked nanoparticle building blocks for programmable matter. Angew. Chem. Int. Ed. 50, 9185-9190 (2011
16. Alivisatos A. P., et al. Organization of nanocrystal molecules using DNA. Nature 382, 609-611 (1996
17. Maye M. M., Nykypanchuk D., Cuisinier M., van Der Lelie D. & Gang O. Stepwise surface encoding for high-throughput assembly of nanoclusters. Nature Mater. 8, 388-391 (2009
18. Pal S., Deng Z., Ding B., Yan H. & Liu Y. DNA-origami-directed self-assembly of discrete silver-nanoparticle architectures. Angew. Chem. Int. Ed. 49, 2700-2704 (2010
19. Lee J., Hernandez P., Govorov A. O. & Kotov N. A. Exciton-plasmon interactions in molecular spring assemblies of nanowires and wavelength-based protein detection. Nature Mater. 6, 291-295 (2007
20. Sun D., et al. Heterogeneous nanoclusters assembled by PNA-templated doublestranded DNA. Nanoscale 4, 6722-6725 (2012
21. Zhang Y., Lu F., Yager K. G., van Der Lelie D. & Gang O. A general strategy for the DNA-mediated self-assembly of functional nanoparticles into heterogeneous systems. Nature Nanotech. 8, 865-872 (2013
22. Zhang C., et al. A general approach to DNA-programmable atom equivalents. Nature Mater. 12, 741-746 (2013
23. Seeman N. C. DNA in a material world. Nature 421, 427-431 (2003
24. Shih W. M., Quispe J. D. & Joyce G. F. A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature 427, 618-621 (2004
25. Zheng J., et al. From molecular to macroscopic via the rational design of a selfassembled 3D DNA crystal. Nature 461, 74-77 (2009
26. Nykypanchuk D., Maye M. M., van Der Lelie D. & Gang O. DNA-guided crystallization of colloidal nanoparticles. Nature 451, 549-552 (2008
27. Park S. Y., et al. DNA-programmable nanoparticle crystallization. Nature 451, 553-556 (2008
28. Rothemund P. W. K. Folding DNA to create nanoscale shapes and patterns. Nature 440, 297-302 (2006
29. Dietz H., Douglas S. M. & Shih W. M. Folding DNA into twisted and curved nanoscale shapes. Science 325, 725-730 (2009
30. Zhang C., et al. DNA nanocages swallow gold nanoparticles (AuNPs) to form AuNP@DNA cage core-shell structures. ACS Nano 8, 1130-1135 (2014
31. Sharma J., et al. Control of self-assembly of DNA tubules through integration of gold nanoparticles. Science 323, 112-116 (2009
32. Andersen E. S., et al. Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459, 73-76 (2009
33. He Y., et al. Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra. Nature 452, 198-201 (2008
34. Bai X., Martin T. G., Scheres S. H. W. & Dietz H. Cryo-EM structure of a 3D DNA-origami object. Proc. Natl Acad. Sci. USA 149, 20012-20017 (2012
35. Midgley P. A. & Dunin-Borkowski R. E. Electron tomography and holography in materials science. Nature Mater. 8, 271-280 (2009
36. Kourkoutis L. F., Plitzko J. M. & Baumeister W. Electron microscopy of biological materials at the nanometer scale. Annu. Rev. Mater. Res. 42, 33-58 (2012
37. De-Rosier D. & Klug A. Reconstruction of three dimensional structures from electron micrographs. Nature 217, 130-134 (1968
38. Douglas S. M., et al. Rapid prototyping of 3D DNA-origami shapes with caDNAno. Nucleic Acids Res. 37, 5001-5006 (2009
39. Mathieu F., et al. Six-helix bundles designed from DNA. Nano Lett. 5, 661-665 (2005
40. Douglas S. M., et al. Self-assembly of DNA into nanoscale three-dimensional shapes. Nature 459, 414-418 (2009
41. Douglas S. M., Chou J. J. & Shih W. M. DNA-nanotube-induced alignment of membrane proteins for NMR structure determination. Proc. Natl Acad. Sci. USA 104, 6644-6648 (2006
42. Hill H. D., Millstone J. E., Banholzer M. J. & Mirkin C. A. The role radius of curvature plays in thiolated oligonucleotide loading on gold nanoparticles. ACS Nano 3, 418-424 (2009
43. King R. B. Nonhanded chirality in octahedral metal complexes. Chirality 13, 465-473 (2001
44. Chi C., Vargas-Lara F., Tkachenko A. V., Starr F. W. & Gang O. Internal structure of nanoparticle dimers linked by DNA. ACS Nano 6, 6793-7802 (2012
45. Kaya H. Scattering from cylinders with globular end-caps. J. Appl. Crystallogr. 37, 223-230 (2004