Response to the Formal Letter of Z. Chrzanowska-Lightowlers and R. N. Lightowlers Regarding Our Article “Ribosome Rescue and Translation Termination at Non-Standard Stop Codons by ICT1 in Mammalian Mitochondria”

PLoS Genetics

Volumn 11, Issue 6, 2015, Pages

  Takeuchi, Nono ^a   Nierhaus, Knud H ^b  

^a UNIVERSITY OF TOKYO   (Japan)

^b CHARITÉ UNIVERSITÄTSMEDIZIN BERLIN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; ICT1 PROTEIN; MESSENGER RNA; MITOCHONDRIAL PROTEIN; MTDNA ENCODED CYTOCHROME C OXIDASE SUBUNIT I; MTDNA NADH DEHYDROGENASE 6; RELE PROTEIN; RIBONUCLEASE; TRANSFER RNA; UNCLASSIFIED DRUG; PROTEIN; STOP CODON;

ALGORITHM; ARTICLE; BINDING SITE; HUMAN; MITOCHONDRION; MITORIBOSOME; NON STANDARD STOP CODON; OPEN READING FRAME; PROTEIN BINDING; PROTEIN CLEAVAGE; PROTEIN SECONDARY STRUCTURE; RIBOSOME; RIBOSOME RESCUE; RNA SEQUENCE; STOP CODON; TRANSCRIPTION TERMINATION; TRANSLATION TERMINATION; ANIMAL; GENETICS; METABOLISM; RNA TRANSLATION;

MAMMALIA;

ANIMALS; CODON, TERMINATOR; HUMANS; MITOCHONDRIA; PEPTIDE CHAIN TERMINATION, TRANSLATIONAL; PROTEINS; RIBOSOMES;

EID: 84937793652     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1005218     Document Type: Article

References (17)

1. Akabane S, Ueda T, Nierhaus KH, Takeuchi N, (2014) Ribosome rescue and translation termination at non-standard stop codons by ICT1 in mammalian mitochondria, PLOS genetics. 10, e1004616. doi: 10.1371/journal.pgen.1004616 25233460
2. Temperley R, Richter R, Dennerlein S, Lightowlers RN, Chrzanowska-Lightowlers ZM, (2010) Hungry codons promote frameshifting in human mitochondrial ribosomes, Science. 327, 301.
3. Soleimanpour-Lichaei HR, Kuhl I, Gaisne M, Passos JF, Wydro M, et al. (2007) mtRF1a is a human mitochondrial translation release factor decoding the major termination codons UAA and UAG, Molecular cell. 27, 745–57.
4. Nozaki Y, Matsunaga N, Ishizawa T, Ueda T, Takeuchi N, (2008) HMRF1L is a human mitochondrial translation release factor involved in the decoding of the termination codons UAA and UAG, Genes to cells: devoted to molecular & cellular mechanisms. 13, 429–38.
5. Pedersen K, Zavialov AV, Pavlov MY, Elf J, Gerdes K, et al. (2003) The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site, Cell. 112, 131–40.
6. Hurley JM, Cruz JW, Ouyang M, Woychik NA, (2011) Bacterial toxin RelE mediates frequent codon-independent mRNA cleavage from the 5' end of coding regions in vivo, The Journal of biological chemistry. 286, 14770–8. doi: 10.1074/jbc.M110.108969 21324908
7. Neubauer C, Gao YG, Andersen KR, Dunham CM, Kelley AC, et al. (2009) The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE, Cell. 139, 1084–95. doi: 10.1016/j.cell.2009.11.015 20005802
8. Lind C, Sund J, Aqvist J, (2013) Codon-reading specificities of mitochondrial release factors and translation termination at non-standard stop codons, Nature communications. 4, 2940. doi: 10.1038/ncomms3940 24352605
9. Gesteland RF, Weiss RB, Atkins JF, (1992) Recoding: reprogrammed genetic decoding, Science. 257, 1640–1. 1529352
10. Olubajo B, Taylor EW, , (2005) A -1 frameshift in the HIV-1 env gene is enhanced by arginine deficiency via a hungry codon mechanism, Mutation research. 579, 125–32. 16055159
11. Kerrigan JJ, McNulty DE, Burns M, Allen KE, Tang X, et al. (2008) Frameshift events associated with the lysyl-tRNA and the rare arginine codon, AGA, in Escherichia coli: a case study involving the human Relaxin 2 protein, Protein expression and purification. 60, 110–6. doi: 10.1016/j.pep.2008.02.016 18474430
12. Sharma MR, Koc EC, Datta PP, Booth TM, Spremulli LL, et al. (2003) Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins, Cell. 115, 97–108.
13. Mears JA, Sharma MR, Gutell RR, McCook AS, Richardson PE, et al. (2006) A structural model for the large subunit of the mammalian mitochondrial ribosome, Journal of molecular biology. 358, 193–212. 16510155
14. Greber BJ, Boehringer D, Leibundgut M, Bieri P, Leitner A, et al. (2014) The complete structure of the large subunit of the mammalian mitochondrial ribosome, Nature. 515, 283–6. doi: 10.1038/nature13895 25271403
15. Brown A, Amunts A, Bai XC, Sugimoto Y, Edwards PC, et al. (2014) Structure of the large ribosomal subunit from human mitochondria, Science. 346, 718–22. doi: 10.1126/science.1258026 25278503
16. Ojala D, Montoya J, Attardi G, (1981) tRNA punctuation model of RNA processing in human mitochondria, Nature. 290, 470–4. 7219536
17. Greber BJ, Boehringer D, Leitner A, Bieri P, Voigts-Hoffmann F, et al. (2014) Architecture of the large subunit of the mammalian mitochondrial ribosome, Nature. 505, 515–9.