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Volumn 80, Issue 3-4, 2015, Pages 219-226

Effects of Codon Usage on Gene Expression: Empirical Studies on Drosophila

Author keywords

Codon usage bias; Drosophila; Gene expression; Translation

Indexed keywords

CODON; MESSENGER RNA;

EID: 84937762904     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-015-9675-y     Document Type: Article
Times cited : (19)

References (21)
  • 1
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy
    • COI: 1:CAS:528:DyaK2MXpsFaq, PID: 8005445
    • Akashi H (1994) Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. Genetics 136:927–935
    • (1994) Genetics , vol.136 , pp. 927-935
    • Akashi, H.1
  • 2
    • 0023057525 scopus 로고
    • Diversity in G+C content at the third position codons in vertebrate genes and its cause
    • COI: 1:CAS:528:DyaL28XlsVOntbw%3D, PID: 3748815
    • Aota S, Ikemura T (1986) Diversity in G+C content at the third position codons in vertebrate genes and its cause. Nucleic Acids Res 14:6345–6355
    • (1986) Nucleic Acids Res , vol.14 , pp. 6345-6355
    • Aota, S.1    Ikemura, T.2
  • 3
    • 0023813828 scopus 로고
    • Codon usage and intragenic position
    • COI: 1:CAS:528:DyaL1cXlsVentbc%3D
    • Bulmer M (1988) Codon usage and intragenic position. J Theoret Biol 133:67–71
    • (1988) J Theoret Biol , vol.133 , pp. 67-71
    • Bulmer, M.1
  • 4
    • 0037274714 scopus 로고    scopus 로고
    • In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein
    • COI: 1:CAS:528:DC%2BD3sXhvFCiu7g%3D, PID: 12586711
    • Carlini DB, Stephan W (2003) In vivo introduction of unpreferred synonymous codons into the DrosophilaAdh gene results in reduced levels of ADH protein. Genetics 163:239–243
    • (2003) Genetics , vol.163 , pp. 239-243
    • Carlini, D.B.1    Stephan, W.2
  • 5
    • 84937770402 scopus 로고    scopus 로고
    • Drosophla Genomics Resource Center, Indiana University, Bloomington.
    • Drosophla Genomics Resource Center, Indiana University, Bloomington. http://dgrc.cgb.indiana.edu
  • 6
    • 84886302057 scopus 로고    scopus 로고
    • Causes and effects of N-terminal codon bias in bacterial genes
    • COI: 1:CAS:528:DC%2BC3sXhs1Ckt7vO, PID: 24072823
    • Goodman DB, Church GM, Kosuri S (2013) Causes and effects of N-terminal codon bias in bacterial genes. Science 342:475–479
    • (2013) Science , vol.342 , pp. 475-479
    • Goodman, D.B.1    Church, G.M.2    Kosuri, S.3
  • 7
    • 45949103617 scopus 로고
    • Codon catalog usage is a genome strategy modulated for gene expressivity
    • COI: 1:CAS:528:DyaL3MXpvVWksQ%3D%3D, PID: 7208352
    • Grantham R, Gautier C, Gouy M, Jacobzone M, Mercier R (1981) Codon catalog usage is a genome strategy modulated for gene expressivity. Nucleic Acids Res 9:r43–r79
    • (1981) Nucleic Acids Res , vol.9 , pp. 43-79
    • Grantham, R.1    Gautier, C.2    Gouy, M.3    Jacobzone, M.4    Mercier, R.5
  • 8
    • 77749268307 scopus 로고    scopus 로고
    • Experimentally increased codon bias in the Drosohila Adh gene leads to an increase in larval, but not adult, alcohol dehydrogenase activity
    • COI: 1:CAS:528:DC%2BC3cXhsFOnur3I, PID: 19966063
    • Hense W, Anderson N, Hutter S, Stephan W, Parsch J, Carlini D (2010) Experimentally increased codon bias in the Drosohila Adh gene leads to an increase in larval, but not adult, alcohol dehydrogenase activity. Genetics 184:547–555
    • (2010) Genetics , vol.184 , pp. 547-555
    • Hense, W.1    Anderson, N.2    Hutter, S.3    Stephan, W.4    Parsch, J.5    Carlini, D.6
  • 9
    • 0019824131 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in the protein genes: a proposal for a synonymous codon choice that is optimal for E. coli translational system
    • COI: 1:CAS:528:DyaL38Xks1ygsA%3D%3D, PID: 6175758
    • Ikemura T (1981) Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in the protein genes: a proposal for a synonymous codon choice that is optimal for E. coli translational system. J Mol Biol 151:389–409
    • (1981) J Mol Biol , vol.151 , pp. 389-409
    • Ikemura, T.1
  • 10
    • 0019949369 scopus 로고
    • Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes: differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs
    • COI: 1:CAS:528:DyaL38Xlt1Whur8%3D, PID: 6750137
    • Ikemura T (1982) Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes: differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs. J Mol Biol 158:573–597
    • (1982) J Mol Biol , vol.158 , pp. 573-597
    • Ikemura, T.1
  • 11
    • 64849114915 scopus 로고    scopus 로고
    • Coding sequence determinants of gene expression in Escherichia coli
    • COI: 1:CAS:528:DC%2BD1MXktFals7o%3D, PID: 19359587
    • Kudla G, Murray AW, Tollervey D, Plotkin JB (2009) Coding sequence determinants of gene expression in Escherichia coli. Science 324:255–258
    • (2009) Science , vol.324 , pp. 255-258
    • Kudla, G.1    Murray, A.W.2    Tollervey, D.3    Plotkin, J.B.4
  • 13
    • 34547709593 scopus 로고    scopus 로고
    • Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals
    • COI: 1:CAS:528:DC%2BD2sXpsVGrsLw%3D, PID: 17525472
    • Parmley JL, Hurst LD (2007) Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals. Mol Biol Evol 24:1600–1603
    • (2007) Mol Biol Evol , vol.24 , pp. 1600-1603
    • Parmley, J.L.1    Hurst, L.D.2
  • 14
    • 78650304100 scopus 로고    scopus 로고
    • Synonymous but not the same: the causes and consequences of codon bias
    • COI: 1:CAS:528:DC%2BC3cXhsFOiu7vF, PID: 21102527
    • Plotkin JB, Kudla G (2011) Synonymous but not the same: the causes and consequences of codon bias. Nat Rev Genet 12:32–42
    • (2011) Nat Rev Genet , vol.12 , pp. 32-42
    • Plotkin, J.B.1    Kudla, G.2
  • 16
    • 0014944566 scopus 로고
    • Non-Darwinian evolution: a critique
    • COI: 1:STN:280:DyaE3c7isl2mtQ%3D%3D, PID: 5416467
    • Richmond R (1970) Non-Darwinian evolution: a critique. Nature 225:1025–1028
    • (1970) Nature , vol.225 , pp. 1025-1028
    • Richmond, R.1
  • 17
    • 38649096895 scopus 로고    scopus 로고
    • Codon usage in twelve species of Drosophila
    • PID: 18005411
    • Vicario S, Moriyama EN, Powell JR (2007) Codon usage in twelve species of Drosophila. BMC Evol Biol 7:226
    • (2007) BMC Evol Biol , vol.7 , pp. 226
    • Vicario, S.1    Moriyama, E.N.2    Powell, J.R.3
  • 18
    • 84937770403 scopus 로고    scopus 로고
    • Genomic tRNA Database
    • Genomic tRNA Database. http://gtrnadb.ucsc.edu/Dmela/
  • 19
    • 84937770404 scopus 로고    scopus 로고
    • RNA fold
    • RNA fold: http://rna.tbi.univie.ac.at/cgi-bin/RNAFold.cgi
  • 20
    • 0002365884 scopus 로고
    • Modified nucleosides and codon recognition
    • Soll D, RajBhandary D, (eds), American Society for Microbiology, Washington:
    • Yokoyama S, Nishimura S (1995) Modified nucleosides and codon recognition. In: Soll D, RajBhandary D (eds) tRNA: structure, biosynthesis and function. American Society for Microbiology, Washington, pp 207–223
    • (1995) tRNA: structure, biosynthesis and function , pp. 207-223
    • Yokoyama, S.1    Nishimura, S.2
  • 21
    • 0013776758 scopus 로고
    • Molecules as documents of evolutionary history
    • COI: 1:STN:280:DyaF2s7jvFyhtw%3D%3D
    • Zuckerkandl E, Pauling L (1965) Molecules as documents of evolutionary history. J Theoret Biol 8:357–366
    • (1965) J Theoret Biol , vol.8 , pp. 357-366
    • Zuckerkandl, E.1    Pauling, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.