Exome sequencing of contralateral breast cancer identifies metastatic disease

Breast Cancer Research and Treatment

Volumn 151, Issue 2, 2015, Pages 319-324

  Klevebring, Daniel ^a,b   Lindberg, Johan ^a,b   Rockberg, Julia ^a   Hilliges, Camilla ^a,c   Hall, Per ^a   Sandberg, Maria ^a   Czene, Kamila ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

^b SCIENCE FOR LIFE LABORATORY   (Sweden)

^c KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

Author keywords

Bilateral; Breast cancer; Contralateral; Metastasis; Recurrence

Indexed keywords

ALLELE; BREAST TUMOR; EXOME; FEMALE; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; METABOLISM; METASTASIS; MORTALITY; MUTATION; PATHOLOGY; PROGNOSIS; REGISTER;

ALLELES; BREAST NEOPLASMS; EXOME; FEMALE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MUTATION; NEOPLASM METASTASIS; PROGNOSIS; REGISTRIES;

EID: 84937758852     PISSN: 01676806     EISSN: 15737217     Source Type: Journal    
DOI: 10.1007/s10549-015-3403-6     Document Type: Article

References (21)

1. Globocan 2008 [http://globocan.iarc.fr]
2. Brenner H, Engelsmann B, Stegmaier C, Ziegler H (1993) Clinical epidemiology of bilateral breast cancer. Cancer 72:3629–3635
3. Hartman M, Czene K, Reilly M, Adolfsson J, Bergh J, Adami H-O, Dickman PW, Hall P (2007) Incidence and prognosis of synchronous and metachronous bilateral breast cancer. J Clin Oncol 25:4210–4216
4. Janschek E, Kandioler-Eckersberger D, Ludwig C, Kappel S, Wolf B, Taucher S, Rudas M, Gnant M, Jakesz R (2001) Contralateral breast cancer: molecular differentiation between metastasis and second primary cancer. Breast Cancer Res Treat 67:1–8
5. Imyanitov EN, Suspitsin EN, Grigoriev MY, Togo AV, Kuligina ES, Belogubova EV, Pozharisski KM, Turkevich EA, Rodriquez C, Cornelisse CJ, Hanson KP, Theillet C (2002) Concordance of allelic imbalance profiles in synchronous and metachronous bilateral breast carcinomas. Int J Cancer 100:557–564
6. Brommesson S, Jönsson G, Strand C, Grabau D, Malmström P, Ringnér M, Fernö M, Hedenfalk I (2008) Tiling array-CGH for the assessment of genomic similarities among synchronous unilateral and bilateral invasive breast cancer tumor pairs. BMC Clin Pathol 8:6
7. Teixeira MR, Ribeiro FR, Torres L, Pandis N, Andersen JA, Lothe RA, Heim S (2004) Assessment of clonal relationships in ipsilateral and bilateral multiple breast carcinomas by comparative genomic hybridisation and hierarchical clustering analysis. Br J Cancer 91(4):775–782
8. Ding L, Ley TJ, Larson DE, Miller CA, Koboldt DC, Welch JS, Ritchey JK, Young MA, Lamprecht T, Mclellan MD, Mcmichael JF, Wallis JW, Lu C, Shen D, Harris CC, Dooling DJ, Fulton RS, Fulton LL, Chen K, Schmidt H, Kalicki-Veizer J, Magrini VJ, Cook L, Mcgrath SD, Vickery TL, Wendl MC, Heath S, Watson MA, Link DC, Tomasson MH et al (2012) Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing. Nature 481:506–509
9. Ding L, Ellis MJ, Li S, Larson DE, Chen K, Wallis JW, Harris CC, Mclellan MD, Fulton RS, Fulton LL, Abbott RM, Hoog J, Dooling DJ, Koboldt DC, Schmidt H, Kalicki J, Zhang Q, Chen L, Lin L, Wendl MC, Mcmichael JF, Magrini VJ, Cook L, Mcgrath SD, Vickery TL, Appelbaum E, Deschryver K, Davies S, Guintoli T, Lin L et al (2010) Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature 464:999–1005
10. Van Allen EM, Foye A, Wagle N, Kim W, Carter SL, McKenna A, Simko JP, Garraway LA, Febbo PG (2013) Successful whole-exome sequencing from a prostate cancer bone metastasis biopsy. Prostate Cancer Prostatic Dis 17:23–27
11. Haffner MC, Mosbruger T, Esopi DM, Fedor H, Heaphy CM, Walker DA, Adejola N, Gürel M, Hicks J, Meeker AK, Halushka MK, Simons JW, Isaacs WB, De Marzo AM, Nelson WG, Yegnasubramanian S (2013) Tracking the clonal origin of lethal prostate cancer. J Clin Invest 123:4918–4922
12. SeqPrep [https://github.com/jstjohn/SeqPrep]. Accessed 10 March 2014
13. Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754–1760
14. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R (2009) 1000 genome project data processing subgroup: the sequence alignment/map format and SAMtools. Bioinformatics 25:2078–2079
15. Picard [http://picard.sourceforge.net]. version 1.85. Accessed 10 Feb 2013
16. McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA (2010) The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20:1297–1303
17. Cibulskis K, Lawrence MS, Carter SL, Sivachenko A, Jaffe D, Sougnez C, Gabriel SB, Meyerson M, Lander ES, Getz G (2013) Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat Biotechnol 31:213–219
18. Network Cancer Genome Atlas (2012) Comprehensive molecular portraits of human breast tumours. Nature 490:61–70
19. Banelli B, Casciano I, Di Vinci A, Gatteschi B, Levaggi A, Carli F, Bighin C, Salvi S, Allemanni G, Ghiorzo P, Pronzato P, Venturini M, Romani M, Del Mastro L (2010) Pathological and molecular characteristics distinguishing contralateral metastatic from new primary breast cancer. Ann Oncol 21:1237–1242
20. Bastien RR, guez-Lescure LR, Ebbert MT, Prat A, Rriz BM, Rowe L, Miller P, Ruiz-Borrego M, Anderson D, Lyons B, lvarez I, Dowell T, Wall D, Segu MN, Barley L, Boucher KM, Alba E, Pappas L, Davis CA, Aranda I, Fauron C, Stijleman IJ, Palacios J, Antón A, Carrasco E, Caballero RA, Ellis MJ, Nielsen TO, Perou CM, Astill M et al (2012) PAM50 breast cancer subtyping by RT-qPCR and concordance with standard clinical molecular markers. BMC Med Genomics 5(1):44
21. Ivshina AV, George J, Senko O, Mow B, Putti TC, Smeds J, Lindahl T, Pawitan Y, Hall P, Nordgren H, Wong JEL, Liu ET, Bergh J, Kuznetsov VA, Miller LD (2006) Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer. Cancer Res 66:10292–10301