Spectrum of enteropathogens detected by the FilmArray GI Panel in a multicentre study of community-acquired gastroenteritis

Clinical Microbiology and Infection

Volumn 21, Issue 8, 2015, Pages 719-728

  Spina, A ^a   Kerr, K G ^b   Cormican, M ^c   Barbut, F ^d   Eigentler, A ^e   Zerva, L ^f   Tassios, P ^f   Popescu, G A ^g   Rafila, A ^g   Eerola, E ^h   Batista, J ⁱ   Maass, M ^j   Aschbacher, R ^k   Olsen, K E P ^l   Allerberger, F ^a  

^a AUSTRIAN AGENCY FOR HEALTH AND FOOD SAFETY   (Austria)

^b HARROGATE AND DISTRICT NHS FOUNDATION TRUST   (United Kingdom)

^c NATIONAL UNIVERSITY OF IRELAND   (Ireland)

^d HÔPITAL SAINT ANTOINE   (France)

^e Labor Moest   (Austria)

^f NATIONAL AND KAPODISTRIAN UNIVERSITY OF ATHENS   (Greece)

^g CAROL DAVILA UNIVERSITY OF MEDICINE AND PHARMACY   (Romania)

^h UNIVERSITY OF TURKU   (Finland)

ⁱ Occidental Hospital Centre   (Portugal)

^j Labor Dr Heidrich and Kollegen MVZ   (Germany)

^k Laboratorio Aziendale di Microbiologia e Virologia   (Italy)

^l STATENS SERUM INSTITUT   (Denmark)

more..

Author keywords

Community acquired; Gastroenteritis; Gastrointestinal pathogens; Multiplex PCR detection; Stool

Indexed keywords

ADOLESCENT; ADULT; AGED; BACTERIUM DETECTION; BACTERIUM ISOLATE; CAMPYLOBACTER; CHILD; CLOSTRIDIUM; COMMUNITY ACQUIRED INFECTION; ENTAMOEBA HISTOLYTICA; ENTEROAGGREGATIVE ESCHERICHIA COLI; ENTEROPATHOGENIC ESCHERICHIA COLI; ENTEROTOXIGENIC ESCHERICHIA COLI; EUROPE; FECES ANALYSIS; FEMALE; GASTROENTERITIS; HUMAN; MALE; MULTICENTER STUDY; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; NOROVIRUS; PRIORITY JOURNAL; REVIEW; VIBRIO CHOLERAE; VIRUS DETECTION; VIRUS ISOLATION; ANIMAL; BACTERIUM; CLASSIFICATION; CLINICAL TRIAL; COMMUNITY-ACQUIRED INFECTIONS; CROSS-SECTIONAL STUDY; GENETICS; INFANT; ISOLATION AND PURIFICATION; MIDDLE AGED; MOLECULAR DIAGNOSIS; NEWBORN; PARASITE; PRESCHOOL CHILD; VERY ELDERLY; VIRUS; YOUNG ADULT;

CAMPYLOBACTER; CLOSTRIDIUM DIFFICILE; ENTAMOEBA HISTOLYTICA; ESCHERICHIA COLI; NOROVIRUS; VIBRIO CHOLERAE;

ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; ANIMALS; BACTERIA; CHILD; CHILD, PRESCHOOL; COMMUNITY-ACQUIRED INFECTIONS; CROSS-SECTIONAL STUDIES; EUROPE; FEMALE; GASTROENTERITIS; HUMANS; INFANT; INFANT, NEWBORN; MALE; MIDDLE AGED; MOLECULAR DIAGNOSTIC TECHNIQUES; PARASITES; VIRUSES; YOUNG ADULT;

EID: 84937517939     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1016/j.cmi.2015.04.007     Document Type: Review

References (26)

1. La Rocque R.C., Calderwood S.B. Syndromes of enteric infections. Mandell, Douglas, and Bennett's principles and practice of infectious diseases 2014, 1238-1247. Elsevier, Philadelphia, PA. 8th ed. J.E. Bennett, R. Dolin, M.J. Blaser (Eds.).
2. Guerrant R.I., Van Gilder T., Steiner T.S., Thielman N.M., Slutsker L., Tauxe R.V., et al. Practice guidelines for the management of infectious diarrhea. Clin Infect Dis 2001, 32:331-351.
3. DuPont H.L. Clinical practice: bacterial diarrhea. N Engl J Med 2009, 361:1560-1569.
4. Stefanoff R., Rogalska J., Czech M., Staszewska E., Rosinska M. Antibacterial prescriptions for acute gastrointestinal infections: uncovering the iceberg. Epidemiol Infect 2013, 141:859-867.
5. Tompkins D.S., Hudson M.J., Smith H.R., Eglin R.P., Wheeler J.G., Brett M.M., et al. A study of infectious intestinal disease in England: Microbiological findings in cases and controls. Commun Dis Public Health 1999, 2:108-113.
6. Karsten C., Baumgarte S., Friedrich A.W., von Eiff C., Becker K., Wosniok W., et al. Incidence and risk factors for community-acquired acute gastroenteritis in north-west Germany in 2004. Eur J Clin Microbiol Infect Dis 2009, 28:935-943.
7. Kotloff K.L., Wasserman S.S., Steciak J.Y., Tall B.D., Losonsky G.A., Nair P., et al. Acute diarrhea in Baltimore children attending an outpatient clinic. Pediatr Infect Dis J 1988, 7:753-759.
8. de Wit M.A., Koopmans M.P., Kortbeek L.M., van Leeuwen N.J., Vinjé J., van Duynhoven Y.T. Etiology of gastroenteritis in sentinel general practices in the Netherlands. Clin Infect Dis 2001, 33:280-288.
9. de Wit M.A., Kortbeek L.M., Koopmans M.P., de Jager C.J., Wannet W.J., Bartelds A.I., et al. A comparison of gastroenteritis in a general practice-based study and a community-based study. Epidemiol Infect 2001, 127:389-397.
10. Huhulescu S., Kiss R., Brettlecker M., Cerny R.J., Hess C., Wewalka G., et al. Etiology of acute gastroenteritis in three sentinel general practices, Austria 2007. Infection 2009, 37:103-108.
11. Wikswo M.E., Hall A.J., Centers for Disease Control and Prevention Outbreaks of acute gastroenteritis transmitted by person-to-person contact-United States, 2009-2010. MMWR Surveill Summ 2012, 61:1-12.
12. Amar C.F., East C.L., Gray J., Iturriza-Gomara M., Maclure E.A., McLauchlin J. Detection by PCR of eight groups of enteric pathogens in 4,627 faecal samples: Re-examination of the English case-control Infectious Intestinal Disease Study (1993-1996). Eur J Clin Microbiol Infect Dis 2007, 26:311-323.
13. Buss S.N., Leber A., Chapin K., Fey P.D., Bankowski M.J., Jones M.K., et al. Multicenter evaluation of the BioFire FilmArray™ Gastrointestinal Panel for the etiologic diagnosis of infectious gastroenteritis. J Clin Microbiol 2015 Jan 14, 53:915-925. pii: JCM.02674-14.
14. Khare R., Espy M.J., Cebelinski E., Boxrud D., Sloan L.M., Cunningham S.A., et al. Comparative evaluation of two commercial multiplex panels for detection of gastrointestinal pathogens by use of clinical stool specimens. J Clin Microbiol 2014, 52:3667-3673.
15. Søes L.M., Holt H.M., Böttiger B., Nielsen H.V., Andreasen V., Kemp M., et al. Risk factors for Clostridium difficile infection in the community: a case-control study in patients in general practice, Denmark, 2009-2011. Epidemiol Infect 2014, 142:1437-1448.
16. Olesen B., Neimann J., Böttiger B., Ethelberg S., Schiellerup P., Jensen C., et al. Etiology of diarrhea in young children in Denmark: a case-control study. J Clin Microbiol 2005, 43:3636-3641.
17. Anonymous Regulation (EC) No. 2160/2003 of the European Parliament and of the Council of November 17, 2003 on the control of Salmonella and other specified food-borne zoonotic agents. Off J Eur Union 2003, L325:1-15.
18. Anonymous Regulation (EC) No. 1168/2006 of July 31, 2006 implementing Regulation 1168/2003 as regards a community target for the reduction of the prevalence of certain Salmonella serotypes of laying hens of Gallus gallus and amending Regulation EC No. 1003/2005. Off J Eur Union 2006, L211:1-5.
19. Payne D.C., Vinje J., Szilagyi P.G., Edwards K.M., Staat M.A., Weinberg G.A., et al. Norovirus and medically attended gastroenteritis in US children. N Engl J Med 2013, 368:1121-1130.
20. Bauer M.P., Notermans D.W., van Benthem B.H., Brazier J.S., Wilcox M.H., Rupnik M., et al. Clostridium difficile infection in Europe: a hospital-based survey. Lancet 2011, 377:63-73.
21. Hell M., Sickau K., Chmelizek G., Kern J.M., Maass M., Huhulescu S., et al. Absence of Clostridium difficile in asymptomatic hospital staff. Am J Infect Control 2012, 40:1023-1024.
22. Friedman N.D., Pollard J., Stupart D., Knight D.R., Khajehnoori M., Davey E.K., et al. Prevalence of Clostridium difficile colonization among healthcare workers. BMC Infect Dis 2013, 13:459-481. 10.1186/1471-2334-13-459.
23. Crobach M.J.T., Dekkers O.M., Wilcox M.H., Kuijper E.J. Data review and recommendations for diagnosing Clostridium difficile infection. Clin Microbiol Infect 2009, 15:1053-1066.
24. Lal A., Hales S., French N., Baker M.G. Seasonality in human zoonotic enteric diseases: a systematic review. PLoS One 2012, 7:e31883.
25. European Centre for Disease Prevention and Control Annual epidemiological report 2014-food- and waterborne diseases and zoonoses 2014, ECDC, Stockholm, Available at:, [last accessed 3 January 2015]. http://www.ecdc.europa.eu/en/press/news/_layouts/forms/News_DispForm.aspx?List=8db7286c-fe2d-476c-9133-18ff4cb1b568%26ID=1119.
26. EFSA (European Food Safety Authority) and ECDC (European Centre for Disease Prevention and Control) The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-borne Outbreaks in 2012. EFSA J 2014, 12:3547.