Sequence-dependent structural stability of self-assembled cylindrical nanofibers by peptide amphiphiles

Biomacromolecules

Volumn 16, Issue 7, 2015, Pages 2209-2219

  Fu, Iris W ^a   Nguyen, Hung D ^a  

^a University of California at Irvine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMPHIPHILES; BIOMIMETICS; HYDROGELS; HYDROPHOBICITY; MICELLES; MOLECULAR DYNAMICS; PEPTIDES; SCAFFOLDS (BIOLOGY); STABILITY;

BIOMIMETIC HYDROGELS; CYLINDRICAL NANOFIBERS; HYDROGEL NANOSTRUCTURES; LARGE-SCALE MOLECULAR DYNAMICS; STRUCTURAL ARRANGEMENT; STRUCTURAL CHARACTERISTICS; STRUCTURAL STABILITIES; THREE-DIMENSIONAL NETWORKS;

NANOFIBERS;

ALKYL GROUP; AMPHOPHILE; NANOFIBER; NANOMATERIAL; PEPTIDE; HYDROGEL;

ARTICLE; BETA SHEET; GEL; HYDROGEL; HYDROPHOBICITY; KINETICS; MICELLE; MOLECULAR DYNAMICS; PRIORITY JOURNAL; TISSUE ENGINEERING; AMINO ACID SEQUENCE; CHEMICAL PHENOMENA; CHEMISTRY;

AMINO ACID SEQUENCE; HYDROGELS; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; KINETICS; MOLECULAR DYNAMICS SIMULATION; NANOFIBERS; PEPTIDES;

EID: 84937044229     PISSN: 15257797     EISSN: 15264602     Source Type: Journal    
DOI: 10.1021/acs.biomac.5b00595     Document Type: Article

References (66)

1. Dirks, A. T. J.; Nolte, R. J. M.; Cornelissen, J. J. L. M. Adv. Mater. 2008, 20, 3953-3957
2. Hartgerink, J. D.; Beniash, E.; Stupp, S. I. Science 2001, 294, 1684-1688
3. Trent, A.; Marullo, R.; Lin, B.; Black, M.; Tirrell, M. Soft Matter 2011, 7, 9572-9582
4. Tysseling-Mattiace, V. M.; Sahni, V.; Niece, K. L.; Birch, D.; Czeisler, C.; Fehlings, M. G.; Stupp, S. I.; Kessler, J. A. J. Neurosci. 2008, 28, 3814-3823
5. Sohdi, A.; Campbell, D.; Topham, P. Chiang Mai J. Sci. 2012, 39, 351-372
6. Pettikiriarachchi, J. T. S.; Parish, C. L.; Shoichet, M. S.; Forsythe, J. S.; Nisbet, D. R. Aust. J. Chem. 2010, 63, 1143-1154
7. Ghosh, A.; Haverick, M.; Stump, K.; Yang, X.; Tweedle, M. F.; Goldberger, J. E. J. Am. Chem. Soc. 2012, 134, 3647-3650
8. Ghosh, A.; Dobson, E. T.; Buettner, C. J.; Nicholl, M. J.; Goldberger, J. E. Langmuir 2014, 30, 15383-15387
9. Frisch, H.; Besenius, P. Macromol. Rapid Commun. 2015, 36, 346-363
10. Cote, Y.; Fu, I. W.; Dobson, E. T.; Goldberger, J. E.; Nguyen, H. D.; Shen, J. K. J. Phys. Chem. C 2014, 118, 16272-16278
11. Hartgerink, J. D.; Beniash, E.; Stupp, S. I. Proc. Natl. Acad. Sci. U. S. A. 2002, 99, 5133-5138
12. Niece, K. L.; Czeisler, C.; Sahni, V.; Tysseling-Mattiace, V.; Pashuck, E. T.; Kessler, J. A.; Stupp, S. I. Biomaterials 2008, 29, 4501-4509
13. Toksoz, S.; Mammadov, R.; Tekinay, A. B.; Guler, M. O. J. Colloid Interface Sci. 2011, 356, 131-137
14. Yu, Y.-C.; Berndt, P.; Tirrell, M.; Fields, G. B. J. Am. Chem. Soc. 1996, 118, 12515-12520
15. Black, M.; Trent, A.; Kostenko, Y.; Lee, J. S.; Olive, C.; Tirrell, M. Adv. Mater. 2012, 24, 3845-3849
16. He, C.; Han, Y.; Fan, Y.; Deng, M.; Wang, Y. Langmuir 2012, 28, 3391-3396
17. Pashuck, E. T.; Cui, H.; Stupp, S. I. J. Am. Chem. Soc. 2010, 132, 6041-6046
18. Cui, H.; Cheetham, A. G.; Pashuck, E. T.; Stupp, S. I. J. Am. Chem. Soc. 2014, 136, 12461-12468
19. Storrie, H.; Guler, M. O.; Abu-Amara, S. N.; Volberg, T.; Rao, M.; Geiger, B.; Stupp, S. I. Biomaterials 2007, 28, 4608-4618
20. Dagdas, Y. S.; Tombuloglu, A.; Tekinay, A. B.; Dana, A.; Guler, M. O. Soft Matter 2011, 7, 3524-3532
21. Ghanaati, S.; Webber, M. J.; Unger, R. E.; Orth, C.; Hulvat, J. F.; Kiehna, S. E.; Barbeck, M.; Rasic, A.; Stupp, S. I.; Kirkpatrick, C. J. Biomaterials 2009, 30, 6202-6212
22. Dehsorkhi, A.; Castelletto, V.; Hamley, I. W. J. Pept. Sci. 2014, 20, 453-467
23. Cui, H.; Webber, M. J.; Stupp, S. I. Biopolymers 2010, 94, 1-18
24. Jun, H.-W.; Paramonov, S. E.; Dong, H.; Forraz, N.; McGuckin, C.; Hartgerink, J. D. J. Biomater. Sci., Polym. Ed. 2008, 19, 665-676
25. Kim, J.-K.; Anderson, J.; Jun, H.-W.; Repka, M. A.; Jo, S. Mol. Pharmaceutics 2009, 6, 978-985
26. Khan, S.; Sur, S.; Newcomb, C. J.; Appelt, E. A.; Stupp, S. I. Acta Biomater. 2012, 8, 1685-1692
27. Klok, H.-A. J. Polym. Sci., A: Polym. Chem. 2004, 43, 1-17
28. Engler, A. J.; Sen, S.; Sweeney, H. L.; Discher, D. E. Cell 2006, 126, 677-689
29. Tse, J. R.; Engler, A. J. Preparation of Hydrogel Substrates with Tunable Mechanical Properties; John Wiley & Sons, Inc.: Hoboken, NJ, 2001.
30. Discher, D. E.; Janmey, P.; Wang, Y.-L. Science 2005, 310, 1139-1143
31. Paramonov, S. E.; Jun, H.-W.; Hartgerink, J. D. J. Am. Chem. Soc. 2006, 128, 7291-7298
32. Yan, C.; Pochan, D. J. Chem. Soc. Rev. 2010, 39, 3528-3540
33. Schneider, J. P.; Pochan, D. J.; Ozbas, B.; Rajagopal, K.; Pakstis, L.; Kretsinger, J. J. Am. Chem. Soc. 2002, 124, 15030-15037
34. Roberts, D.; Rochas, C.; Saiani, A.; Miller, A. F. Langmuir 2012, 28, 16196-16206
35. Ramachandran, S.; Trewhella, J.; Tseng, Y.; Yu, Y. B. Chem. Mater. 2006, 18, 6157-6162
36. Ramachandran, S.; Yu, Y. B. BioDrugs 2006, 20, 263-269
37. Ramachandran, S.; Tseng, Y.; Yu, Y. B. Biomacromolecules 2005, 6, 1316-1321
38. Meng, Q.; Kou, Y.; Ma, X.; Liang, Y.; Guo, L.; Ni, C.; Liu, K. Langmuir 2012, 28, 5017-5022
39. Yuwono, V. M.; Hartgerink, J. D. Langmuir 2007, 23, 5033-5038
40. Wang, J.; Han, S.; Meng, G.; Xu, H.; Xia, D.; Zhao, X.; Schweins, R.; Lu, J. R. Soft Matter 2009, 5, 3870-3878
41. Missirlis, D.; Chworos, A.; Fu, C. J.; Khant, H. A.; Krogstad, D. V.; Tirrell, M. Langmuir 2011, 27, 6163-6170
42. Fu, I. W.; Markegard, C. B.; Chu, B. K.; Nguyen, H. D. Adv. Healthcare Mater. 2013, 2, 1388-1400
43. Morriss-Andrews, A.; Shea, J.-E. Annu. Rev. Phys. Chem. 2015, 66, 643-666
44. Fu, I. W.; Markegard, C. B.; Chu, B. K.; Nguyen, H. D. Langmuir 2014, 30, 7745-7754
45. Fu, I. W.; Markegard, C. B.; Nguyen, H. D. Langmuir 2015, 31, 315-324
46. Voegler Smith, A.; Hall, C. K. Proteins: Struct., Funct., Bioinf. 2001, 44, 344-360
47. Nguyen, H. D.; Hall, C. K. Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 16180-16185
48. Nguyen, H. D.; Marchut, A. J.; Hall, C. K. Protein Sci. 2004, 13, 2909-2924
49. Wallqvist, A.; Ullner, M. Proteins: Struct., Funct., Bioinf. 1994, 18, 267-280
50. Wesson, L.; Eisenberg, D. Protein Sci. 1992, 1, 227-235
51. Gu, W.; Rahi, S. J.; Helms, V. J. Phys. Chem. B 2004, 108, 5806-5814
52. Lee, O.-S.; Stupp, S. I.; Schatz, G. C. J. Am. Chem. Soc. 2011, 133, 3677-3683
53. Lee, O.-S.; Liu, Y.; Schatz, G. C. J. Nanopart. Res. 2012, 14, 1-7
54. Lee, O.-S.; Cho, V.; Schatz, G. C. Nano Lett. 2012, 12, 4907-4913
55. Andersen, H. C. J. Chem. Phys. 1980, 72, 2384-2393
56. Chu, B. K.; Fu, I. W.; Markegard, C. B.; Choi, S. E.; Nguyen, H. D. Biomacromolecules 2014, 15, 3313-3320
57. Frishman, D.; Frishman, D.; Argos, P.; Argos, P. Proteins: Struct., Funct., Bioinf. 1995, 23, 566-579
58. Zhou, Y.; Zhou, Y.; Vitkup, D.; Vitkup, D.; Karplus, M.; Karplus, M. J. Mol. Biol. 1999, 285, 1371-1375
59. MacKerell, A. D., Jr.; Bashford, D.; Bellott, M.; Dunbrack, R. L., Jr; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S. J. Phys. Chem. B 1998, 102, 3586-3616
60. Mackerell, A. D., Jr.; Feig, M.; Brooks, C. L., III. J. Comput. Chem. 2004, 25, 1400-1415
61. Brooks, B. R.; Brooks, C. L., III; MacKerell, A. D., Jr.; Nilsson, L.; Petrella, R. J.; Roux, B.; Won, Y.; Archontis, G.; Bartels, C.; Boresch, S.; Caflisch, A.; Caves, L.; Cui, Q.; Dinner, A. R.; Feig, M.; Fischer, S.; Gao, J.; Hodoscek, M.; Im, W.; Kuczera, K.; Lazaridis, T.; Ma, J.; Ovchinnikov, V.; Paci, E.; Pastor, R. W.; Post, C. B.; Pu, J. Z.; Schaefer, M.; Tidor, B.; Venable, R. M.; Woodcock, H. L.; Wu, X.; Yang, W.; York, D. M.; Karplus, M. J. Comput. Chem. 2009, 30, 1545-1614
62. Humphrey, W.; Dalke, A.; Schulten, K. J. Mol. Graphics 1996, 14, 33-38
63. Stendahl, J. C.; Rao, M. S.; Guler, M. O.; Stupp, S. I. Adv. Funct. Mater. 2006, 16, 499-508
64. The PyMOL Molecular Graphics System, Version 1.7.4; Schrödinger, LLC.
65. Ortony, J. H.; Newcomb, C. J.; Matson, J. B.; Palmer, L. C.; Doan, P. E.; Hoffman, B. M.; Stupp, S. I. Nat. Mater. 2014, 13, 812-816
66. Chou, P. Y.; Fasman, G. D. Biochemistry 1974, 13, 222-245