BSPAT: A fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data

BMC Bioinformatics

Volumn 16, Issue 1, 2015, Pages

  Hu, Ke ^a   Ting, Angela H ^b   Li, Jing ^a  

^a Case Western Reserve University   (United States)

^b LERNER RESEARCH INSTITUTE   (United States)

Author keywords

Allele specific methylation; Bisulfite sequencing analysis; DNA methylation; Methylation co occurrence patterns

Indexed keywords

ALKYLATION; CELL CULTURE; DISEASES; DNA; DNA SEQUENCES; GENES; MAPPING; METHYLATION; SOCIAL NETWORKING (ONLINE); THROUGHPUT; VISUALIZATION;

BISULFITE-SEQUENCING; CO-OCCURRENCE PATTERN; DNA METHYLATION; DNA METHYLATION PATTERN; INTEGRATIVE ANALYSIS; PROSTATE CANCER CELLS; REGIONS OF INTEREST; SEQUENCE ALIGNMENT METHODS;

GENE ENCODING;

HYDROGEN SULFITE; SULFITE;

CHEMISTRY; DNA METHYLATION; DNA SEQUENCE; GENETICS; GENOMICS; HIGH THROUGHPUT SEQUENCING; HUMAN; MALE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROCEDURES; PROSTATE TUMOR; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SOFTWARE; TUMOR CELL LINE;

BASE SEQUENCE; CELL LINE, TUMOR; DNA METHYLATION; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MALE; MOLECULAR SEQUENCE DATA; PROSTATIC NEOPLASMS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOFTWARE; SULFITES;

EID: 84936850110     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-015-0649-2     Document Type: Article

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