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Volumn 10, Issue 6, 2015, Pages

Genomic analysis and surveillance of the coronavirus dominant in ducks in China

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 84936803080     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0129256     Document Type: Article
Times cited : (18)

References (30)
  • 1
    • 0038523806 scopus 로고    scopus 로고
    • Identification of a novel coronavirus in patients with severe acute respiratory syndrome
    • Epub 2003/04/12. NEJMoa030747 [pii]. PMID: 12690091
    • Drosten C, Gunther S, Preiser W, van der Werf S, Brodt HR, Becker S, et al. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N Engl J Med. 2003; 348(20):1967-1976. Epub 2003/04/12. doi: 10.1056/NEJMoa030747 NEJMoa030747 [pii]. PMID: 12690091.
    • (2003) N Engl J Med , vol.348 , Issue.20 , pp. 1967-1976
    • Drosten, C.1    Gunther, S.2    Preiser, W.3    Van Der Werf, S.4    Brodt, H.R.5    Becker, S.6
  • 2
    • 0037561920 scopus 로고    scopus 로고
    • Characterization of a novel coronavirus associated with severe acute respiratory syndrome
    • Epub 2003/05/06. 1085952 [pii]. PMID: 12730500
    • Rota PA, Oberste MS, Monroe SS, Nix WA, Campagnoli R, Icenogle JP, et al. Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science. 2003; 300(5624): 1394-1399. Epub 2003/05/06. doi: 10.1126/science.1085952 1085952 [pii]. PMID: 12730500.
    • (2003) Science , vol.300 , Issue.5624 , pp. 1394-1399
    • Rota, P.A.1    Oberste, M.S.2    Monroe, S.S.3    Nix, W.A.4    Campagnoli, R.5    Icenogle, J.P.6
  • 3
    • 84868516062 scopus 로고    scopus 로고
    • Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia
    • Epub 2012/10/19. PMID: 23075143
    • Zaki AM, van Boheemen S, Bestebroer TM, Osterhaus AD, Fouchier RA. Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N Engl J Med. 2012; 367(19):1814-1820. Epub 2012/10/19. doi: 10.1056/NEJMoa1211721 PMID: 23075143.
    • (2012) N Engl J Med , vol.367 , Issue.19 , pp. 1814-1820
    • Zaki, A.M.1    Van Boheemen, S.2    Bestebroer, T.M.3    Osterhaus, A.D.4    Fouchier, R.A.5
  • 4
    • 84889573658 scopus 로고    scopus 로고
    • Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor
    • Epub 2013/11/01. nature12711 [pii] PMID: 24172901
    • Ge XY, Li JL, Yang XL, Chmura AA, Zhu G, Epstein JH, et al. Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor. Nature. 2013; 503(7477):535-538. Epub 2013/11/01. nature12711 [pii] doi: 10.1038/nature12711 PMID: 24172901.
    • (2013) Nature , vol.503 , Issue.7477 , pp. 535-538
    • Ge, X.Y.1    Li, J.L.2    Yang, X.L.3    Chmura, A.A.4    Zhu, G.5    Epstein, J.H.6
  • 5
    • 84874096089 scopus 로고    scopus 로고
    • Human betacoronavirus 2c EMC/2012-related viruses in bats, Ghana and Europe
    • Epub 2013/04/30. PMID: 23622767; PubMed Central PMCID: PMC3647674
    • Annan A, Baldwin HJ, Corman VM, Klose SM, Owusu M, Nkrumah EE, et al. Human betacoronavirus 2c EMC/2012-related viruses in bats, Ghana and Europe. Emerg Infect Dis. 2013; 19(3):456-459. Epub 2013/04/30. doi: 10.3201/eid1903.121503 PMID: 23622767; PubMed Central PMCID: PMC3647674.
    • (2013) Emerg Infect Dis , vol.19 , Issue.3 , pp. 456-459
    • Annan, A.1    Baldwin, H.J.2    Corman, V.M.3    Klose, S.M.4    Owusu, M.5    Nkrumah, E.E.6
  • 6
    • 27344438916 scopus 로고    scopus 로고
    • Bats are natural reservoirs of SARS-like coronaviruses
    • Epub 2005/10/01. 1118391 [pii] PMID: 16195424
    • Li W, Shi Z, Yu M, Ren W, Smith C, Epstein JH, et al. Bats are natural reservoirs of SARS-like coronaviruses. Science. 2005; 310(5748):676-679. Epub 2005/10/01. 1118391 [pii] doi: 10.1126/science.1118391 PMID: 16195424.
    • (2005) Science , vol.310 , Issue.5748 , pp. 676-679
    • Li, W.1    Shi, Z.2    Yu, M.3    Ren, W.4    Smith, C.5    Epstein, J.H.6
  • 7
    • 33745782272 scopus 로고    scopus 로고
    • Comparative analysis of 22 coronavirus HKU1 genomes reveals a novel genotype and evidence of natural recombination in coronavirus HKU1
    • Epub 2006/07/01. 80/14/7136 [pii] PMID: 16809319; PubMed Central PMCID: PMC1489027
    • Woo PC, Lau SK, Yip CC, Huang Y, Tsoi HW, Chan KH, et al. Comparative analysis of 22 coronavirus HKU1 genomes reveals a novel genotype and evidence of natural recombination in coronavirus HKU1. J Virol. 2006; 80(14):7136-7145. Epub 2006/07/01. 80/14/7136 [pii] doi: 10.1128/JVI.00509-06 PMID: 16809319; PubMed Central PMCID: PMC1489027.
    • (2006) J Virol , vol.80 , Issue.14 , pp. 7136-7145
    • Woo, P.C.1    Lau, S.K.2    Yip, C.C.3    Huang, Y.4    Tsoi, H.W.5    Chan, K.H.6
  • 9
    • 84861307149 scopus 로고    scopus 로고
    • Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus
    • Epub 2012/01/27. JVI.06540-11 [pii] PMID: 22278237; PubMed Central PMCID: PMC3302495
    • Woo PC, Lau SK, Lam CS, Lau CC, Tsang AK, Lau JH, et al. Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus. J Virol. 2012; 86(7):3995-4008. Epub 2012/01/27. JVI.06540-11 [pii] doi: 10.1128/JVI.06540-11 PMID: 22278237; PubMed Central PMCID: PMC3302495.
    • (2012) J Virol , vol.86 , Issue.7 , pp. 3995-4008
    • Woo, P.C.1    Lau, S.K.2    Lam, C.S.3    Lau, C.C.4    Tsang, A.K.5    Lau, J.H.6
  • 10
    • 84891706732 scopus 로고    scopus 로고
    • Discovery of a novel bottlenose dolphin coronavirus reveals a distinct species of marine mammal coronavirus in Gammacoronavirus
    • Epub 2013/11/15. JVI.02351-13 [pii] PMID: 24227844; PubMed Central PMCID: PMC3911666
    • Woo PC, Lau SK, Lam CS, Tsang AK, Hui SW, Fan RY, et al. Discovery of a novel bottlenose dolphin coronavirus reveals a distinct species of marine mammal coronavirus in Gammacoronavirus. J Virol. 2014; 88(2):1318-1331. Epub 2013/11/15. JVI.02351-13 [pii] doi: 10.1128/JVI.02351-13 PMID: 24227844; PubMed Central PMCID: PMC3911666.
    • (2014) J Virol , vol.88 , Issue.2 , pp. 1318-1331
    • Woo, P.C.1    Lau, S.K.2    Lam, C.S.3    Tsang, A.K.4    Hui, S.W.5    Fan, R.Y.6
  • 11
    • 43249111857 scopus 로고    scopus 로고
    • Identification of a novel coronavirus from a beluga whale by using a panviral microarray
    • Epub 2008/03/21. JVI.02722-07 [pii] PMID: 18353961; PubMed Central PMCID: PMC2346750
    • Mihindukulasuriya KA, Wu G, St Leger J, Nordhausen RW, Wang D. Identification of a novel coronavirus from a beluga whale by using a panviral microarray. J Virol. 2008; 82(10):5084-5088. Epub 2008/03/21. JVI.02722-07 [pii] doi: 10.1128/JVI.02722-07 PMID: 18353961; PubMed Central PMCID: PMC2346750.
    • (2008) J Virol , vol.82 , Issue.10 , pp. 5084-5088
    • Mihindukulasuriya, K.A.1    Wu, G.2    St Leger, J.3    Nordhausen, R.W.4    Wang, D.5
  • 12
    • 84883382703 scopus 로고    scopus 로고
    • Identification and survey of a novel avian coronavirus in ducks
    • Epub 2013/09/12. PONE-D-13-17240 [pii]. PMID: 24023656; PubMed Central PMCID: PMC3758261
    • Chen GQ, Zhuang QY, Wang KC, Liu S, Shao JZ, Jiang WM, et al. Identification and survey of a novel avian coronavirus in ducks. PLoS One. 2013; 8(8):e72918. Epub 2013/09/12. doi: 10.1371/journal.pone.0072918 PONE-D-13-17240 [pii]. PMID: 24023656; PubMed Central PMCID: PMC3758261.
    • (2013) PLoS One , vol.8 , Issue.8
    • Chen, G.Q.1    Zhuang, Q.Y.2    Wang, K.C.3    Liu, S.4    Shao, J.Z.5    Jiang, W.M.6
  • 13
    • 84867375181 scopus 로고    scopus 로고
    • The long view: 40 Years of infectious bronchitis research
    • Epub 2012/06/19. PMID: 22702451
    • Cook JK, Jackwood M, Jones RC. The long view: 40 years of infectious bronchitis research. Avian Pathol. 2012; 41(3):239-250. Epub 2012/06/19. doi: 10.1080/03079457.2012.680432 PMID: 22702451.
    • (2012) Avian Pathol , vol.41 , Issue.3 , pp. 239-250
    • Cook, J.K.1    Jackwood, M.2    Jones, R.C.3
  • 14
    • 84902123933 scopus 로고    scopus 로고
    • Investigating turkey enteric coronavirus circulating in the Southeastern United States and Arkansas during 2012 and 2013
    • Epub 2014/07/25. PMID: 25055640
    • Day JM, Gonder E, Jennings S, Rives D, Robbins K, Tilley B, et al. Investigating turkey enteric coronavirus circulating in the Southeastern United States and Arkansas during 2012 and 2013. Avian Dis. 2014; 58(2):313-317. Epub 2014/07/25. PMID: 25055640.
    • (2014) Avian Dis , vol.58 , Issue.2 , pp. 313-317
    • Day, J.M.1    Gonder, E.2    Jennings, S.3    Rives, D.4    Robbins, K.5    Tilley, B.6
  • 15
    • 20044396708 scopus 로고    scopus 로고
    • Isolation of avian infectious bronchitis coronavirus from domestic peafowl (Pavo cristatus) and teal (Anas)
    • Epub 2005/02/22. 86/3/719 [pii] PMID: 15722532
    • Liu S, Chen J, Kong X, Shao Y, Han Z, Feng L, et al. Isolation of avian infectious bronchitis coronavirus from domestic peafowl (Pavo cristatus) and teal (Anas). J Gen Virol. 2005;86(Pt 3:) :719-725. Epub 2005/02/22. 86/3/719 [pii] doi: 10.1099/vir.0.80546-0 PMID: 15722532.
    • (2005) J Gen Virol , vol.86 , pp. 719-725
    • Liu, S.1    Chen, J.2    Kong, X.3    Shao, Y.4    Han, Z.5    Feng, L.6
  • 16
    • 20044393041 scopus 로고    scopus 로고
    • Molecular identification and characterization of novel coronaviruses infecting graylag geese (Anser anser), feral pigeons (Columbia livia) and mallards (Anas platyrhynchos)
    • Epub 2005/05/26. 86/6/1597 [pii] PMID: 15914837
    • Jonassen CM, Kofstad T, Larsen IL, Lovland A, Handeland K, Follestad A, et al. Molecular identification and characterization of novel coronaviruses infecting graylag geese (Anser anser), feral pigeons (Columbia livia) and mallards (Anas platyrhynchos). J Gen Virol. 2005; 86(Pt 6):1597-1607. Epub 2005/05/26. 86/6/1597 [pii] doi: 10.1099/vir.0.80927-0 PMID: 15914837.
    • (2005) J Gen Virol , vol.86 , pp. 1597-1607
    • Jonassen, C.M.1    Kofstad, T.2    Larsen, I.L.3    Lovland, A.4    Handeland, K.5    Follestad, A.6
  • 17
    • 78149454326 scopus 로고    scopus 로고
    • Prevalence and phylogeny of coronaviruses in wild birds from the Bering Strait area (Beringia)
    • Epub 2010/11/10. PMID: 21060827; PubMed Central PMCID: PMC2966397
    • Muradrasoli S, Balint A, Wahlgren J, Waldenstrom J, Belak S, Blomberg J, et al. Prevalence and phylogeny of coronaviruses in wild birds from the Bering Strait area (Beringia). PLoS One. 2010; 5(10):e13640. Epub 2010/11/10. doi: 10.1371/journal.pone.0013640 PMID: 21060827; PubMed Central PMCID: PMC2966397.
    • (2010) PLoS One , vol.5 , Issue.10
    • Muradrasoli, S.1    Balint, A.2    Wahlgren, J.3    Waldenstrom, J.4    Belak, S.5    Blomberg, J.6
  • 18
    • 84908090741 scopus 로고    scopus 로고
    • Surveillance of avian coronaviruses in wild bird populations of Korea
    • Epub 2014/06/21. PMID: 24949927
    • Kim HR, Oem JK. Surveillance of avian coronaviruses in wild bird populations of Korea. J Wildl Dis. 2014; 50(4):964-968. Epub 2014/06/21. doi: 10.7589/2013-11-298 PMID: 24949927.
    • (2014) J Wildl Dis , vol.50 , Issue.4 , pp. 964-968
    • Kim, H.R.1    Oem, J.K.2
  • 19
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Epub 2004/03/23. 32/5/1792 [pii]. PMID: 15034147; PubMed Central PMCID: PMC390337
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004; 32(5):1792-1797. Epub 2004/03/23. doi: 10.1093/nar/gkh340 32/5/1792 [pii]. PMID: 15034147; PubMed Central PMCID: PMC390337.
    • (2004) Nucleic Acids Res , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 20
    • 84876533617 scopus 로고    scopus 로고
    • Building phylogenetic trees from molecular data with MEGA
    • Epub 2013/03/15. mst012 [pii] PMID: 23486614
    • Hall BG. Building phylogenetic trees from molecular data with MEGA. Mol Biol Evol. 2013; 30(5):1229-1235. Epub 2013/03/15. mst012 [pii] doi: 10.1093/molbev/mst012 PMID: 23486614.
    • (2013) Mol Biol Evol , vol.30 , Issue.5 , pp. 1229-1235
    • Hall, B.G.1
  • 21
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular Evolutionary Genetics Analysis version 6.0
    • Epub 2013/10/18. mst197 [pii] PMID: 24132122; PubMed Central PMCID: PMC3840312
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 2013; 30(12):2725-2729. Epub 2013/10/18. mst197 [pii] doi: 10.1093/molbev/mst197 PMID: 24132122; PubMed Central PMCID: PMC3840312.
    • (2013) Mol Biol Evol , vol.30 , Issue.12 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 22
    • 0003421005 scopus 로고    scopus 로고
    • Sunderland: Sinauer Associates Inc
    • Li WH. Molecular evolution. Sunderland: Sinauer Associates Inc; 1997. 149-175 p.
    • (1997) Molecular Evolution , pp. 149-175
    • Li, W.H.1
  • 23
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: A flexible and fast computer program for analyzing recombination
    • Epub 2010/08/28. btq467[pii] PMID: 20798170; PubMed Central PMCID: PMC2944210
    • Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics. 2010; 26(19):2462-2463. Epub 2010/08/28. btq467[pii] doi: 10.1093/bioinformatics/btq467 PMID: 20798170; PubMed Central PMCID: PMC2944210.
    • (2010) Bioinformatics , vol.26 , Issue.19 , pp. 2462-2463
    • Martin, D.P.1    Lemey, P.2    Lott, M.3    Moulton, V.4    Posada, D.5    Lefeuvre, P.6
  • 24
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Epub 1989/09/01. PMID: 2677599
    • Sawyer S. Statistical tests for detecting gene conversion. Mol Biol Evol. 1989; 6(5):526-538. Epub 1989/09/01. PMID: 2677599.
    • (1989) Mol Biol Evol , vol.6 , Issue.5 , pp. 526-538
    • Sawyer, S.1
  • 25
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • Epub 2005/01/25. PMID: 15665649
    • Martin DP, Posada D, Crandall KA, Williamson C. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res Hum Retroviruses. 2005; 21(1):98-102. Epub 2005/01/25. doi: 10.1089/aid.2005.21.98 PMID: 15665649.
    • (2005) AIDS Res Hum Retroviruses , vol.21 , Issue.1 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 26
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Epub 1992/02/01. PMID: 1556748
    • Smith JM. Analyzing the mosaic structure of genes. J Mol Evol. 1992; 34(2):126-129. Epub 1992/02/01. PMID: 1556748.
    • (1992) J Mol Evol , vol.34 , Issue.2 , pp. 126-129
    • Smith, J.M.1
  • 27
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • Epub 2001/11/22. PMID: 11717435; PubMed Central PMCID: PMC61114
    • Posada D, Crandall KA. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci U S A. 2001; 98(24):13757-23762. Epub 2001/11/22. doi: 10.1073/pnas.241370698 98/24/13757 [pii]. PMID: 11717435; PubMed Central PMCID: PMC61114.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.24 , pp. 13757-23762
    • Posada, D.1    Crandall, K.A.2
  • 28
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI- BLAST: A new generation of protein database search programs
    • Epub 1997/09/01. gka562 [pii]. PMID: 9254694; PubMed Central PMCID: PMC146917
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI- BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997; 25(17):3389-3402. Epub 1997/09/01. gka562 [pii]. PMID: 9254694; PubMed Central PMCID: PMC146917.
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6
  • 29
    • 84884279815 scopus 로고    scopus 로고
    • Viral evolution: Fooling the coronavirus proofreading machinery
    • Epub 2013/09/11. nrmicro3125 [pii] PMID: 24018385
    • Hofer U. Viral evolution: fooling the coronavirus proofreading machinery. Nat Rev Microbiol. 2013; 11(10):662-663. Epub 2013/09/11. nrmicro3125 [pii] doi: 10.1038/nrmicro3125 PMID: 24018385.
    • (2013) Nat Rev Microbiol , vol.11 , Issue.10 , pp. 662-663
    • Hofer, U.1
  • 30
    • 84871373070 scopus 로고    scopus 로고
    • Chinese and global distribution of H9 subtype avian influenza viruses
    • Epub 2013/01/04. PONE-D-12-25418 [pii]. PMID: 23285143; PubMed Central PMCID: PMC3528714
    • Jiang W, Liu S, Hou G, Li J, Zhuang Q, Wang S, et al. Chinese and global distribution of H9 subtype avian influenza viruses. PLoS One. 2012; 7(12):e52671. Epub 2013/01/04. doi: 10.1371/journal.pone.0052671 PONE-D-12-25418 [pii]. PMID: 23285143; PubMed Central PMCID: PMC3528714.
    • (2012) PLoS One , vol.7 , Issue.12
    • Jiang, W.1    Liu, S.2    Hou, G.3    Li, J.4    Zhuang, Q.5    Wang, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.