메뉴 건너뛰기




Volumn 43, Issue 9, 2015, Pages 4569-4578

2′-Fluoro-modified phosphorothioate oligonucleotide can cause rapid degradation of P54nrb and PSF

Author keywords

[No Author keywords available]

Indexed keywords

ANTISENSE OLIGONUCLEOTIDE; FLUORINE; NONO PROTEIN, HUMAN; NUCLEAR MATRIX PROTEIN; NUCLEAR PROTEIN; OCTAMER TRANSCRIPTION FACTOR; OLIGONUCLEOTIDE PHOSPHOROTHIOATE; P54NRB PROTEIN, MOUSE; PSPC1 PROTEIN, HUMAN; PTB-ASSOCIATED SPLICING FACTOR; RNA BINDING PROTEIN;

EID: 84936792294     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv298     Document Type: Article
Times cited : (88)

References (33)
  • 2
    • 60149088848 scopus 로고    scopus 로고
    • Origins and mechanisms of miRNAs and siRNAs
    • Carthew, R.W. and Sontheimer, E.J. (2009) Origins and mechanisms of miRNAs and siRNAs. Cell, 136, 642-655.
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 3
    • 84856431819 scopus 로고    scopus 로고
    • RNA therapeutics: Beyond RNA interference and antisense oligonucleotides
    • Kole, R., Krainer, A.R. and Altman, S. (2012) RNA therapeutics: Beyond RNA interference and antisense oligonucleotides. Nat. Rev. Drug Discov., 11, 125-140.
    • (2012) Nat. Rev. Drug Discov. , vol.11 , pp. 125-140
    • Kole, R.1    Krainer, A.R.2    Altman, S.3
  • 4
    • 77949512140 scopus 로고    scopus 로고
    • RNA targeting therapeutics: Molecular mechanisms of antisense oligonucleotides as a therapeutic platform
    • Bennett, C.F. and Swayze, E.E. (2010) RNA targeting therapeutics: Molecular mechanisms of antisense oligonucleotides as a therapeutic platform. Annu. Rev. Pharmacol. Toxicol., 50, 259-293.
    • (2010) Annu. Rev. Pharmacol. Toxicol. , vol.50 , pp. 259-293
    • Bennett, C.F.1    Swayze, E.E.2
  • 5
    • 0037440005 scopus 로고    scopus 로고
    • Tolerance for mutations and chemical modifications in a siRNA
    • Amarzguioui, M., Holen, T., Babaie, E. and Prydz, H. (2003) Tolerance for mutations and chemical modifications in a siRNA. Nucleic Acids Res., 31, 589-595.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 589-595
    • Amarzguioui, M.1    Holen, T.2    Babaie, E.3    Prydz, H.4
  • 6
    • 84905562856 scopus 로고    scopus 로고
    • Phosphorothioate oligonucleotides can displace NEAT1 RNA and form nuclear paraspeckle-like structures
    • Shen, W., Liang, X.H. and Crooke, S.T. (2014) Phosphorothioate oligonucleotides can displace NEAT1 RNA and form nuclear paraspeckle-like structures. Nucleic Acids Res., 42, 8648-8662.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 8648-8662
    • Shen, W.1    Liang, X.H.2    Crooke, S.T.3
  • 7
    • 84903979435 scopus 로고    scopus 로고
    • TCP1 complex proteins interact with phosphorothioate oligonucleotides and can co-localize in oligonucleotide-induced nuclear bodies in mammalian cells
    • Liang, X.H., Shen, W., Sun, H., Prakash, T.P. and Crooke, S.T. (2014) TCP1 complex proteins interact with phosphorothioate oligonucleotides and can co-localize in oligonucleotide-induced nuclear bodies in mammalian cells. Nucleic Acids Res., 42, 7819-7832.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 7819-7832
    • Liang, X.H.1    Shen, W.2    Sun, H.3    Prakash, T.P.4    Crooke, S.T.5
  • 9
    • 84936790721 scopus 로고    scopus 로고
    • Identification and characterization of intracellular proteins that bind oligonucleotides with phosphorothioate linkages
    • Liang, X.H., Sun, H., Shen, W. and Crooke, S.T. (2015) Identification and characterization of intracellular proteins that bind oligonucleotides with phosphorothioate linkages. Nucleic Acids Res., 43, 2927-2945.
    • (2015) Nucleic Acids Res. , vol.43 , pp. 2927-2945
    • Liang, X.H.1    Sun, H.2    Shen, W.3    Crooke, S.T.4
  • 10
    • 84859467060 scopus 로고    scopus 로고
    • Structure of the heterodimer of human NONO and paraspeckle protein component 1 and analysis of its role in subnuclear body formation
    • Passon, D.M., Lee, M., Rackham, O., Stanley, W.A., Sadowska, A., Filipovska, A., Fox, A.H. and Bond, C.S. (2012) Structure of the heterodimer of human NONO and paraspeckle protein component 1 and analysis of its role in subnuclear body formation. Proc. Natl. Acad. Sci. U.S.A., 109, 4846-4850.
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , pp. 4846-4850
    • Passon, D.M.1    Lee, M.2    Rackham, O.3    Stanley, W.A.4    Sadowska, A.5    Filipovska, A.6    Fox, A.H.7    Bond, C.S.8
  • 11
    • 34447550769 scopus 로고    scopus 로고
    • The multifunctional protein p54nrb/PSF recruits the exonuclease XRN2 to facilitate pre-mRNA 3-processing and transcription termination
    • Kaneko, S., Rozenblatt-Rosen, O., Meyerson, M. and Manley, J.L. (2007) The multifunctional protein p54nrb/PSF recruits the exonuclease XRN2 to facilitate pre-mRNA 3-processing and transcription termination. Genes Dev., 21, 1779-1789.
    • (2007) Genes Dev. , vol.21 , pp. 1779-1789
    • Kaneko, S.1    Rozenblatt-Rosen, O.2    Meyerson, M.3    Manley, J.L.4
  • 12
    • 0037032415 scopus 로고    scopus 로고
    • PSF and p54(nrb)/NonO-multi-functional nuclear proteins
    • Shav-Tal, Y. and Zipori, D. (2002) PSF and p54(nrb)/NonO-multi-functional nuclear proteins. FEBS Lett., 531, 109-114.
    • (2002) FEBS Lett. , vol.531 , pp. 109-114
    • Shav-Tal, Y.1    Zipori, D.2
  • 13
    • 0027245959 scopus 로고
    • Cloning and characterization of PSF, a novel pre-mRNA splicing factor
    • Patton, J.G., Porro, E.B., Galceran, J., Tempst, P. and Nadal-Ginard, B. (1993) Cloning and characterization of PSF, a novel pre-mRNA splicing factor. Genes Dev., 7, 393-406.
    • (1993) Genes Dev. , vol.7 , pp. 393-406
    • Patton, J.G.1    Porro, E.B.2    Galceran, J.3    Tempst, P.4    Nadal-Ginard, B.5
  • 14
    • 0035943347 scopus 로고    scopus 로고
    • The fate of dsRNA in the nucleus: A p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs
    • Zhang, Z. and Carmichael, G.G. (2001) The fate of dsRNA in the nucleus: A p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs. Cell, 106, 465-475.
    • (2001) Cell , vol.106 , pp. 465-475
    • Zhang, Z.1    Carmichael, G.G.2
  • 16
    • 73349143041 scopus 로고    scopus 로고
    • Involvement of p54(nrb), a PSF partner protein, in DNA double-strand break repair and radioresistance
    • Li, S., Kuhne, W.W., Kulharya, A., Hudson, F.Z., Ha, K., Cao, Z. and Dynan, W.S. (2009) Involvement of p54(nrb), a PSF partner protein, in DNA double-strand break repair and radioresistance. Nucleic Acids Res., 37, 6746-6753.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 6746-6753
    • Li, S.1    Kuhne, W.W.2    Kulharya, A.3    Hudson, F.Z.4    Ha, K.5    Cao, Z.6    Dynan, W.S.7
  • 18
    • 84861326886 scopus 로고    scopus 로고
    • Synthetic oligonucleotides recruit ILF2/3 to RNA transcripts to modulate splicing
    • Rigo, F., Hua, Y., Chun, S.J., Prakash, T.P., Krainer, A.R. and Bennett, C.F. (2012) Synthetic oligonucleotides recruit ILF2/3 to RNA transcripts to modulate splicing. Nat. Chem. Biol., 8, 555-561.
    • (2012) Nat. Chem. Biol. , vol.8 , pp. 555-561
    • Rigo, F.1    Hua, Y.2    Chun, S.J.3    Prakash, T.P.4    Krainer, A.R.5    Bennett, C.F.6
  • 20
    • 0030916209 scopus 로고    scopus 로고
    • Inhibition of cyclin D1 phosphorylation on threonine-286 prevents its rapid degradation via the ubiquitin-proteasome pathway
    • Diehl, J.A., Zindy, F. and Sherr, C.J. (1997) Inhibition of cyclin D1 phosphorylation on threonine-286 prevents its rapid degradation via the ubiquitin-proteasome pathway. Genes Dev., 11, 957-972.
    • (1997) Genes Dev. , vol.11 , pp. 957-972
    • Diehl, J.A.1    Zindy, F.2    Sherr, C.J.3
  • 21
    • 27644541914 scopus 로고    scopus 로고
    • P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner
    • Fox, A.H., Bond, C.S. and Lamond, A.I. (2005) P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner. Mol. Biol. Cell, 16, 5304-5315.
    • (2005) Mol. Biol. Cell , vol.16 , pp. 5304-5315
    • Fox, A.H.1    Bond, C.S.2    Lamond, A.I.3
  • 22
    • 84964315984 scopus 로고    scopus 로고
    • Double-strand break repair deficiency in NONO knockout murine embryonic fibroblasts and compensation by spontaneous upregulation of the PSPC1 paralog
    • Li, S., Li, Z., Shu, F.J., Xiong, H., Phillips, A.C. and Dynan, W.S. (2014) Double-strand break repair deficiency in NONO knockout murine embryonic fibroblasts and compensation by spontaneous upregulation of the PSPC1 paralog. Nucleic Acids Res., 42, 9771-9780.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 9771-9780
    • Li, S.1    Li, Z.2    Shu, F.J.3    Xiong, H.4    Phillips, A.C.5    Dynan, W.S.6
  • 23
    • 0023176681 scopus 로고
    • Determinants of a protein fold. Unique features of the globin amino acid sequences
    • Bashford, D., Chothia, C. and Lesk, A.M. (1987) Determinants of a protein fold. Unique features of the globin amino acid sequences. J. Mol. Biol., 196, 199-216.
    • (1987) J. Mol. Biol. , vol.196 , pp. 199-216
    • Bashford, D.1    Chothia, C.2    Lesk, A.M.3
  • 24
    • 0032510765 scopus 로고    scopus 로고
    • Stability effects of increasing the hydrophobicity of solvent-exposed side chains in staphylococcal nuclease
    • Schwehm, J.M., Kristyanne, E.S., Biggers, C.C. and Stites, W.E. (1998) Stability effects of increasing the hydrophobicity of solvent-exposed side chains in staphylococcal nuclease. Biochemistry, 37, 6939-6948.
    • (1998) Biochemistry , vol.37 , pp. 6939-6948
    • Schwehm, J.M.1    Kristyanne, E.S.2    Biggers, C.C.3    Stites, W.E.4
  • 25
    • 0023645872 scopus 로고
    • The engineering of a more thermally stable lactate dehydrogenase by reduction of the area of a water-accessible hydrophobic surface
    • Wigley, D.B., Clarke, A.R., Dunn, C.R., Barstow, D.A., Atkinson, T., Chia, W.N., Muirhead, H. and Holbrook, J.J. (1987) The engineering of a more thermally stable lactate dehydrogenase by reduction of the area of a water-accessible hydrophobic surface. Biochim. Biophys. Acta, 916, 145-148.
    • (1987) Biochim. Biophys. Acta , vol.916 , pp. 145-148
    • Wigley, D.B.1    Clarke, A.R.2    Dunn, C.R.3    Barstow, D.A.4    Atkinson, T.5    Chia, W.N.6    Muirhead, H.7    Holbrook, J.J.8
  • 26
    • 14044257206 scopus 로고    scopus 로고
    • Identification of the polypyrimidine tract binding protein-associated splicing factor.p54(nrb) complex as a candidate DNA double-strand break rejoining factor
    • Bladen, C.L., Udayakumar, D., Takeda, Y. and Dynan, W.S. (2005) Identification of the polypyrimidine tract binding protein-associated splicing factor.p54(nrb) complex as a candidate DNA double-strand break rejoining factor. J. Biol. Chem., 280, 5205-5210.
    • (2005) J. Biol. Chem. , vol.280 , pp. 5205-5210
    • Bladen, C.L.1    Udayakumar, D.2    Takeda, Y.3    Dynan, W.S.4
  • 27
    • 77953564663 scopus 로고    scopus 로고
    • Involvement of Matrin 3 and SFPQ/NONO in the DNA damage response
    • Salton, M., Lerenthal, Y., Wang, S.Y., Chen, D.J. and Shiloh, Y. (2010) Involvement of Matrin 3 and SFPQ/NONO in the DNA damage response. Cell Cycle, 9, 1568-1576.
    • (2010) Cell Cycle , vol.9 , pp. 1568-1576
    • Salton, M.1    Lerenthal, Y.2    Wang, S.Y.3    Chen, D.J.4    Shiloh, Y.5
  • 28
    • 0026341239 scopus 로고
    • Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide
    • Nielsen, P.E., Egholm, M., Berg, R.H. and Buchardt, O. (1991) Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide. Science, 254, 1497-1500.
    • (1991) Science , vol.254 , pp. 1497-1500
    • Nielsen, P.E.1    Egholm, M.2    Berg, R.H.3    Buchardt, O.4
  • 29
    • 0029829006 scopus 로고    scopus 로고
    • Enhancement of strand invasion by oligonucleotides through manipulation of backbone charge
    • Smulevitch, S.V., Simmons, C.G., Norton, J.C., Wise, T.W. and Corey, D.R. (1996) Enhancement of strand invasion by oligonucleotides through manipulation of backbone charge. Nat. Biotechnol., 14, 1700-1704.
    • (1996) Nat. Biotechnol. , vol.14 , pp. 1700-1704
    • Smulevitch, S.V.1    Simmons, C.G.2    Norton, J.C.3    Wise, T.W.4    Corey, D.R.5
  • 30
    • 3042691011 scopus 로고    scopus 로고
    • Recognition of chromosomal DNA by PNAs
    • Kaihatsu, K., Janowski, B.A. and Corey, D.R. (2004) Recognition of chromosomal DNA by PNAs. Chem. Biol., 11, 749-758.
    • (2004) Chem. Biol. , vol.11 , pp. 749-758
    • Kaihatsu, K.1    Janowski, B.A.2    Corey, D.R.3
  • 31
    • 65249122125 scopus 로고    scopus 로고
    • Repair of DNA lesions associated with triplex-forming oligonucleotides
    • Chin, J.Y. and Glazer, P.M. (2009) Repair of DNA lesions associated with triplex-forming oligonucleotides. Mol. Carcinog., 48, 389-399.
    • (2009) Mol. Carcinog. , vol.48 , pp. 389-399
    • Chin, J.Y.1    Glazer, P.M.2
  • 32
    • 0030059301 scopus 로고    scopus 로고
    • Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair
    • Wang, G., Seidman, M.M. and Glazer, P.M. (1996) Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair. Science, 271, 802-805.
    • (1996) Science , vol.271 , pp. 802-805
    • Wang, G.1    Seidman, M.M.2    Glazer, P.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.