메뉴 건너뛰기




Volumn 14, Issue 2, 2016, Pages 735-748

A multiparental cross population for mapping QTL for agronomic traits in durum wheat (Triticum turgidum ssp. durum)

Author keywords

Agronomic traits; Founder haplotypes; Multiparental cross; QTL; SNP; Triticum turgidum

Indexed keywords

GENETIC MARKER;

EID: 84934784329     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/pbi.12424     Document Type: Article
Times cited : (66)

References (61)
  • 1
    • 84907974409 scopus 로고    scopus 로고
    • Characterizing uncertainty in high-density maps from multiparental populations
    • Ahfock, D., Wood, I., Stephen, S., Cavanagh, C.R. and Huang, B.E. (2014) Characterizing uncertainty in high-density maps from multiparental populations. Genetics, 198, 117-128.
    • (2014) Genetics , vol.198 , pp. 117-128
    • Ahfock, D.1    Wood, I.2    Stephen, S.3    Cavanagh, C.R.4    Huang, B.E.5
  • 3
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: analysis and visualization of LD and haplotype maps
    • Barrett, J.C., Fry, B., Maller, J. and Daly, M.J. (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics, 21, 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 5
  • 6
    • 41149121474 scopus 로고    scopus 로고
    • From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants
    • Cavanagh, C., Morell, M., Mackay, I. and Powell, W. (2008) From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants. Curr. Opin. Plant Biol. 11, 215-221.
    • (2008) Curr. Opin. Plant Biol. , vol.11 , pp. 215-221
    • Cavanagh, C.1    Morell, M.2    Mackay, I.3    Powell, W.4
  • 8
    • 0034781050 scopus 로고    scopus 로고
    • A simple correction for multiple comparisons in interval mapping genome scans
    • Cheverud, J.M. (2001) A simple correction for multiple comparisons in interval mapping genome scans. Heredity, 87, 52-58.
    • (2001) Heredity , vol.87 , pp. 52-58
    • Cheverud, J.M.1
  • 12
    • 34548154862 scopus 로고    scopus 로고
    • Control of flowering time in temperate cereals: genes, domestication, and sustainable productivity
    • Cockram, J., Jones, H., Leigh, F.J., O'Sullivan, D., Powell, W., Laurie, D.A. and Greenland, A.J. (2007) Control of flowering time in temperate cereals: genes, domestication, and sustainable productivity. J. Exp. Bot. 58, 1231-1244.
    • (2007) J. Exp. Bot. , vol.58 , pp. 1231-1244
    • Cockram, J.1    Jones, H.2    Leigh, F.J.3    O'Sullivan, D.4    Powell, W.5    Laurie, D.A.6    Greenland, A.J.7
  • 13
    • 48549088204 scopus 로고    scopus 로고
    • Quantitative trait loci and crop performance under abiotic stress: where do we stand?
    • Collins, N.C., Tardieu, F. and Tuberosa, R. (2008) Quantitative trait loci and crop performance under abiotic stress: where do we stand? Plant Physiol. 147, 469-486.
    • (2008) Plant Physiol. , vol.147 , pp. 469-486
    • Collins, N.C.1    Tardieu, F.2    Tuberosa, R.3
  • 14
    • 0028803358 scopus 로고
    • Advanced intercross lines, an experimental population for fine genetic mapping
    • Darvasi, A. and Soller, M. (1995) Advanced intercross lines, an experimental population for fine genetic mapping. Genetics, 141, 1199-1207.
    • (1995) Genetics , vol.141 , pp. 1199-1207
    • Darvasi, A.1    Soller, M.2
  • 15
    • 33751398242 scopus 로고    scopus 로고
    • Breeding progress in morpho-physiological, agronomical and qualitative traits of durum wheat cultivars released in Italy during the 20th century
    • De Vita, P., Li Destri Nicosia, O., Nigro, F., Platani, C., Riefolo, C., Di Fonzo, N. and Cattivelli, L. (2007) Breeding progress in morpho-physiological, agronomical and qualitative traits of durum wheat cultivars released in Italy during the 20th century. Eur. J. Agron. 26, 39-53.
    • (2007) Eur. J. Agron. , vol.26 , pp. 39-53
    • De Vita, P.1    Li Destri Nicosia, O.2    Nigro, F.3    Platani, C.4    Riefolo, C.5    Di Fonzo, N.6    Cattivelli, L.7
  • 16
    • 0034892647 scopus 로고    scopus 로고
    • Further characterization and high-resolution mapping of quantitative trait loci for ethanol induced locomotor activity
    • Demarest, K., Koyner, J., McCaughran, J. Jr, Cipp, L. and Hitzeman, R. (2001) Further characterization and high-resolution mapping of quantitative trait loci for ethanol induced locomotor activity. Behav. Genet. 31, 79-91.
    • (2001) Behav. Genet. , vol.31 , pp. 79-91
    • Demarest, K.1    Koyner, J.2    McCaughran, J.3    Cipp, L.4    Hitzeman, R.5
  • 17
    • 84906943620 scopus 로고    scopus 로고
    • Genomic selection: genome-wide prediction in plant improvement
    • Desta, Z.A. and Ortiz, R. (2014) Genomic selection: genome-wide prediction in plant improvement. Trends Plant Sci. 19, 592-601.
    • (2014) Trends Plant Sci. , vol.19 , pp. 592-601
    • Desta, Z.A.1    Ortiz, R.2
  • 18
    • 84858733836 scopus 로고    scopus 로고
    • Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum)
    • Díaz, A., Zikhali, M., Turner, A.S., Isaac, P. and Laurie, D.A. (2012) Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum). PLoS ONE, 7, e33234.
    • (2012) PLoS ONE , vol.7 , pp. e33234
    • Díaz, A.1    Zikhali, M.2    Turner, A.S.3    Isaac, P.4    Laurie, D.A.5
  • 19
    • 0036245218 scopus 로고    scopus 로고
    • Multifactorial genetics: mapping and analysis of quantitative trait loci in experimental populations
    • Doerge, R.W. (2002) Multifactorial genetics: mapping and analysis of quantitative trait loci in experimental populations. Nat. Rev. Genet. 3, 43-52.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 43-52
    • Doerge, R.W.1
  • 21
  • 24
    • 33847297054 scopus 로고    scopus 로고
    • Genetic architecture of complex traits in plants
    • Holland, J.B. (2007) Genetic architecture of complex traits in plants. Curr. Opin. Plant Biol. 10, 156-161.
    • (2007) Curr. Opin. Plant Biol. , vol.10 , pp. 156-161
    • Holland, J.B.1
  • 25
    • 79951983365 scopus 로고    scopus 로고
    • R/mpMap: a computational platform for the genetic analysis of multiparent recombinant inbred lines
    • Huang, B.E. and George, A.W. (2011) R/mpMap: a computational platform for the genetic analysis of multiparent recombinant inbred lines. Bioinformatics, 27, 727-729.
    • (2011) Bioinformatics , vol.27 , pp. 727-729
    • Huang, B.E.1    George, A.W.2
  • 26
    • 79952719931 scopus 로고    scopus 로고
    • Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population
    • Huang, X., Paulo, M.J., Boer, M., Effgen, S., Keizer, P., Koornneef, M. and Eeuwijk, F.V. (2011) Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population. Proc. Natl Acad. Sci. USA, 108, 4488-4493.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 4488-4493
    • Huang, X.1    Paulo, M.J.2    Boer, M.3    Effgen, S.4    Keizer, P.5    Koornneef, M.6    Eeuwijk, F.V.7
  • 28
    • 0027247860 scopus 로고
    • Interval mapping of multiple quantitative trait loci
    • Jansen, R.C. (1993) Interval mapping of multiple quantitative trait loci. Genetics, 135, 205-211.
    • (1993) Genetics , vol.135 , pp. 205-211
    • Jansen, R.C.1
  • 30
    • 23944519959 scopus 로고    scopus 로고
    • Population structure and long-range linkage disequilibrium in a durum wheat elite collection
    • Maccaferri, M., Sanguineti, M.C., Noli, E. and Tuberosa, R. (2005) Population structure and long-range linkage disequilibrium in a durum wheat elite collection. Mol. Breeding, 15, 271-290.
    • (2005) Mol. Breeding , vol.15 , pp. 271-290
    • Maccaferri, M.1    Sanguineti, M.C.2    Noli, E.3    Tuberosa, R.4
  • 31
    • 34547951643 scopus 로고    scopus 로고
    • Relationships among durum wheat accessions. II. A comparison of molecular and pedigree information
    • Maccaferri, M., Sanguineti, M.C., Xie, C., Smith, J.S.C. and Tuberosa, R. (2007) Relationships among durum wheat accessions. II. A comparison of molecular and pedigree information. Genome, 50, 385-399.
    • (2007) Genome , vol.50 , pp. 385-399
    • Maccaferri, M.1    Sanguineti, M.C.2    Xie, C.3    Smith, J.S.C.4    Tuberosa, R.5
  • 34
    • 33846933954 scopus 로고    scopus 로고
    • Methods for linkage disequilibrium mapping in crops
    • Mackay, I. and Powell, W. (2007) Methods for linkage disequilibrium mapping in crops. Trends Plant Sci. 12, 57-63.
    • (2007) Trends Plant Sci. , vol.12 , pp. 57-63
    • Mackay, I.1    Powell, W.2
  • 37
    • 0002640688 scopus 로고
    • The use of isogenic and heterogenic mouse stocks in behavioral research
    • (Lindzey, G. and Thiessen, D.D., eds). New York: Appleton Century Crofts.
    • McClearn, G.E., Wilson, J.R. and Meredith, W. (1970) The use of isogenic and heterogenic mouse stocks in behavioral research. In Contributions to Behavior-Genetic Analysis: The Mouse as Prototype (Lindzey, G. and Thiessen, D.D., eds), pp. 3-22. New York: Appleton Century Crofts.
    • (1970) Contributions to Behavior-Genetic Analysis: The Mouse as Prototype , pp. 3-22
    • McClearn, G.E.1    Wilson, J.R.2    Meredith, W.3
  • 38
    • 1842539516 scopus 로고    scopus 로고
    • A simple correction for multiple testing for single nucleotide polymorphisms in linkage disequilibrium with each other
    • Nyholt, D.R. (2004) A simple correction for multiple testing for single nucleotide polymorphisms in linkage disequilibrium with each other. Am. J. Hum. Genet. 74, 765-769.
    • (2004) Am. J. Hum. Genet. , vol.74 , pp. 765-769
    • Nyholt, D.R.1
  • 40
    • 85041988145 scopus 로고
    • A new class of resolvable incomplete block designs
    • Patterson, H.D. and Williams, E.R. (1976) A new class of resolvable incomplete block designs. Biometrika, 63, 83-92.
    • (1976) Biometrika , vol.63 , pp. 83-92
    • Patterson, H.D.1    Williams, E.R.2
  • 41
    • 84964924930 scopus 로고    scopus 로고
    • Vienna, Austria: R Foundation for Statistical Computing.
    • R Core Team. (2013) R: A Language and Environment for Statistical computing. Vienna, Austria: R Foundation for Statistical Computing. http://www.R-project.org/
    • (2013) R: A Language and Environment for Statistical computing
  • 43
    • 0034077742 scopus 로고    scopus 로고
    • More about quantitative trait locus mapping with diallel designs
    • Rebai, A. and Goffinet, B. (2000) More about quantitative trait locus mapping with diallel designs. Genet. Res. 75, 243-247.
    • (2000) Genet. Res. , vol.75 , pp. 243-247
    • Rebai, A.1    Goffinet, B.2
  • 44
    • 84892845009 scopus 로고    scopus 로고
    • Use of a large multiparent wheat mapping population in genomic dissection of coleoptile and seedling growth
    • Rebetzke, G.J., Verbyla, A.P., Verbyla, K.L., Morell, M.K. and Cavanagh, C.R. (2014) Use of a large multiparent wheat mapping population in genomic dissection of coleoptile and seedling growth. Plant Biotechnol. J. 12, 219-230.
    • (2014) Plant Biotechnol. J. , vol.12 , pp. 219-230
    • Rebetzke, G.J.1    Verbyla, A.P.2    Verbyla, K.L.3    Morell, M.K.4    Cavanagh, C.R.5
  • 45
    • 41149109971 scopus 로고    scopus 로고
    • Translational research impacting on crop productivity in drought-prone environments
    • Reynolds, M. and Tuberosa, R. (2008) Translational research impacting on crop productivity in drought-prone environments. Curr. Opin. Plant Biol. 11, 171-179.
    • (2008) Curr. Opin. Plant Biol. , vol.11 , pp. 171-179
    • Reynolds, M.1    Tuberosa, R.2
  • 46
    • 84973523859 scopus 로고    scopus 로고
    • Genetic analysis of heading time, grain weight, grain yield and grain yield components in colosseo lloyd durum wheat (Triticum turgidum ssp. durum) population
    • Unpublished.
    • Ricci, A., Maccaferri, M., Salvi, S., Sanguineti, M.C., Stefanelli, S., Corneti, S., Cattivelli, L. and Tuberosa, R. Genetic analysis of heading time, grain weight, grain yield and grain yield components in colosseo lloyd durum wheat (Triticum turgidum ssp. durum) population. Unpublished.
    • Ricci, A.1    Maccaferri, M.2    Salvi, S.3    Sanguineti, M.C.4    Stefanelli, S.5    Corneti, S.6    Cattivelli, L.7    Tuberosa, R.8
  • 47
    • 84892747590 scopus 로고    scopus 로고
    • ® 9.3 Procedures Guide
    • Cary, NC: SAS Institute Inc.
    • ® 9.3 Procedures Guide. Cary, NC: SAS Institute Inc.
    • (2011)
  • 48
    • 84904448137 scopus 로고    scopus 로고
    • Identification and independent validation of a stable yield and thousand grain weight QTL on chromosome 6A of hexaploid wheat (Triticum aestivum L.)
    • Simmonds, J., Scott, P., Leverington-Waite, M., Turner, A.S., Brinton, J., Korzun, V., Snape, J. and Uauy, C. (2014) Identification and independent validation of a stable yield and thousand grain weight QTL on chromosome 6A of hexaploid wheat (Triticum aestivum L.). BMC Plant Biol. 14, 191.
    • (2014) BMC Plant Biol. , vol.14 , pp. 191
    • Simmonds, J.1    Scott, P.2    Leverington-Waite, M.3    Turner, A.S.4    Brinton, J.5    Korzun, V.6    Snape, J.7    Uauy, C.8
  • 49
    • 84936797026 scopus 로고    scopus 로고
    • Efficiently tracking selection in a multiparental population: the case of earliness in wheat
    • Thépot, S., Restoux, G., Goldringer, I., Hospital, F., Gouache, D., Mackay, I. and Enjalbert, J. (2015) Efficiently tracking selection in a multiparental population: the case of earliness in wheat. Genetics, 199, 609-623.
    • (2015) Genetics , vol.199 , pp. 609-623
    • Thépot, S.1    Restoux, G.2    Goldringer, I.3    Hospital, F.4    Gouache, D.5    Mackay, I.6    Enjalbert, J.7
  • 50
    • 0036215090 scopus 로고    scopus 로고
    • Genetic dissection of complex and quantitative traits: from fantasy to reality via a community effort
    • Threadgill, D.W., Hunter, K.W. and Williams, R.W. (2002) Genetic dissection of complex and quantitative traits: from fantasy to reality via a community effort. Mamm. Genome, 13, 175-178.
    • (2002) Mamm. Genome , vol.13 , pp. 175-178
    • Threadgill, D.W.1    Hunter, K.W.2    Williams, R.W.3
  • 51
    • 33645217146 scopus 로고    scopus 로고
    • Simulating the collaborative cross: power of quantitative trait loci detection and mapping resolution in large sets of recombinant inbred strains of mice
    • Valdar, W., Flint, J. and Mott, R. (2006) Simulating the collaborative cross: power of quantitative trait loci detection and mapping resolution in large sets of recombinant inbred strains of mice. Genetics, 172, 1783-1797.
    • (2006) Genetics , vol.172 , pp. 1783-1797
    • Valdar, W.1    Flint, J.2    Mott, R.3
  • 54
    • 84965114563 scopus 로고
    • Sunderland, MA: Sinauer Associates.
    • Weir, B.S. (1990) Genetic Data Analysis. Sunderland, MA: Sinauer Associates.
    • (1990) Genetic Data Analysis
    • Weir, B.S.1
  • 55
    • 58149262876 scopus 로고    scopus 로고
    • Photoperiod insensitive Ppd-A1a mutations in tetraploid wheat (Triticum durum Desf.)
    • Wilhelm, E.P., Turner, A.S. and Laurie, D.A. (2009) Photoperiod insensitive Ppd-A1a mutations in tetraploid wheat (Triticum durum Desf.). Theor. Appl. Genet. 118, 285-294.
    • (2009) Theor. Appl. Genet. , vol.118 , pp. 285-294
    • Wilhelm, E.P.1    Turner, A.S.2    Laurie, D.A.3
  • 56
    • 84863539332 scopus 로고    scopus 로고
    • Mapping QTL for agronomic traits in breeding populations
    • Würschum, T. (2012) Mapping QTL for agronomic traits in breeding populations. Theor. Appl. Genet. 125, 201-210.
    • (2012) Theor. Appl. Genet. , vol.125 , pp. 201-210
    • Würschum, T.1
  • 57
    • 77951217695 scopus 로고    scopus 로고
    • Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms
    • Yamamoto, T., Nagasaki, H., Yonemaru, J., Ebana, K., Nakajima, M., Shibaya, T. and Yano, M. (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genom. 11, 267.
    • (2010) BMC Genom. , vol.11 , pp. 267
    • Yamamoto, T.1    Nagasaki, H.2    Yonemaru, J.3    Ebana, K.4    Nakajima, M.5    Shibaya, T.6    Yano, M.7
  • 59
    • 40849089396 scopus 로고    scopus 로고
    • Genetic design and statistical power of nested association mapping in maize
    • Yu, J., Holland, J.B., Mc Mullen, M.D. and Buckler, E.S. (2008) Genetic design and statistical power of nested association mapping in maize. Genetics, 178, 539-551.
    • (2008) Genetics , vol.178 , pp. 539-551
    • Yu, J.1    Holland, J.B.2    Mc Mullen, M.D.3    Buckler, E.S.4
  • 60
    • 0027363428 scopus 로고
    • Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci
    • Zeng, Z. (1993) Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc. Natl Acad. Sci. USA, 90, 10972-10976.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 10972-10976
    • Zeng, Z.1
  • 61
    • 84927170064 scopus 로고    scopus 로고
    • Use of single nucleotide polymorphisms and haplotypes to identify genomic regions associated with protein content and water-soluble protein content in soybean
    • Zhang, D., Kan, G., Hu, Z., Cheng, H., Zhang, Y., Wang, Q., Wang, H., Yang, Y., Li, H., Hao, D. and Yu, D. (2014) Use of single nucleotide polymorphisms and haplotypes to identify genomic regions associated with protein content and water-soluble protein content in soybean. Theor. Appl. Genet. 127, 1905-1915.
    • (2014) Theor. Appl. Genet. , vol.127 , pp. 1905-1915
    • Zhang, D.1    Kan, G.2    Hu, Z.3    Cheng, H.4    Zhang, Y.5    Wang, Q.6    Wang, H.7    Yang, Y.8    Li, H.9    Hao, D.10    Yu, D.11


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.