Laser microdissection of plant cells

Methods in Molecular Biology

Volumn 1080, Issue , 2014, Pages 249-258

  Ludwig, Yvonne ^a   Hochholdinger, Frank ^a  

^a UNIVERSITY OF BONN   (Germany)

Author keywords

Cell type; Embedding; Fixation; Laser microdissection; Plant; Sectioning

Indexed keywords

PLANT RNA;

ARTICLE; HISTOLOGY; LASER MICRODISSECTION; NONHUMAN; PLANT CELL; PLANT TISSUE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SPECIES;

LASERS; MICRODISSECTION; PLANT CELLS; PLANTS;

EID: 84934444563     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-643-6_21     Document Type: Article

References (28)

1. Schnable PS, Hochholdinger F, Nakazono M (2004) Global expression profi ling applied to plant development. Curr Opin Plant Biol 7:50-56
2. Woll K, Borsuk LA, Stransky H et al (2005) Isolation, characterization, and pericyclespecifi c transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1 . Plant Physiol 139:1255-1267
3. Dembinsky D, Woll K, Saleem M et al (2007) Transcriptomic and proteomic analyses of pericycle cells of the maize primary root. Plant Physiol 145:575-588
4. Nestler J, Schütz W, Hochholdinger F (2011) Conserved and unique features of the maize ( Zea mays L .) root hair proteome. J Proteome Res 10:2525-2537
5. McDowell ET, Kapteyn J, Schmidt A et al (2011) Comparative functional genomic analysis of Solanum glandular trichome types. Plant Physiol 155:524-539
6. Birnbaum K, Shasha DE, Wang JY et al (2003) A gene expression map of the Arabidopsis root. Science 302:1956-1960
7. Kerk NM, Ceserani T, Tausta SL (2003) Laser capture microdissection of cells from plant tissues. Plant Physiol 132:27-35
8. Nakazono M, Qiu F, Borsuk LA et al (2003) Laser-capture microdissection, a tool for the global analysis of gene expression in specifi c plant cell types: identifi cation of genes expressed differentially in epidermal cells or vascular tissues of maize. Plant Cell 15:583-596
9. Barcala M, Fenoll C, Escobar C (2012) Laser microdissection of cells and isolation of highquality RNA after cryosectioning. Methods Mol Biol 883:87-95
10. Cai S, Lashbrook CC (2006) Laser capture microdissection of plant cells from tapetransferred paraffi n sections promotes recovery of structurally intact RNA for global gene profi ling. Plant J 48:628-637
11. Liu Y, von Behrens I, Muthreich N et al (2010) Regulation of the pericycle proteome in maize ( Zea mays L .) primary roots by RUM1 which is required for lateral root initiation. Eur J Cell Biol 89:236-241
12. Kaspar S, Weier D, Weschke W et al (2010) Protein analysis of laser capture micro-dissected tissues revealed cell-type-specifi c biological functions in developing barley grains. Anal Bioanal Chem 398:2883-2893
13. Takehisa H, Sato Y, Igarashi M et al (2012) Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions. Plant J 69: 126-140
14. Brooks L III, Strable J, Zhang X et al (2009) Microdissection of shoot meristem functional domains. PLoS Genet 5:e1000476
15. Suwabe K, Suzuki G, Takahashi H et al (2008) Separated transcriptomes of male gametophyte and tapetum in rice: validity of a laser microdissection (LM) microarray. Plant Cell Physiol 49:1407-1416
16. Takahashi H, Kamakura H, Sato Y et al (2010) A method for obtaining high quality RNA from paraffi n sections of plant tissues by laser microdissection. J Plant Res 123:807-813
17. Ishimaru T, Nakazono M, Masumura T et al (2007) A method for obtaining high integrity RNA from developing aleurone cells and starchy endosperm in rice ( Oryza sativa L .) by laser microdissection. Plant Sci 173:321-326
18. Inada N, Wildermuth MC (2005) Novel tissue preparation method and cell-specifi c marker for laser microdissection of Arabidopsis mature leaf. Planta 221:9-16
19. Zhang X, Madi S, Borsuk L et al (2007) Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. PLoS Genet 3:e101
20. Emrich SJ, Barbazuk WB, Li L et al (2007) Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res 17:69-73
21. Schichnes D, Nemson J, Sohlberg L et al (1998) Microwave protocols for paraffi n microtechnique and in situ localization in plants. Microsc Microanal 4:491-496
22. Kobayashi K, Yasuno N, Sato Y et al (2012) Infl orescence meristem identity in rice is specifi ed by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene. Plant Cell 24:1848-1859
23. Schiebold S, Tschiersch H, Borisjuk L et al (2011) A novel procedure for the quantitative analysis of metabolites, storage products and transcripts of laser microdissected seed tissues of Brassica napus . Plant Methods 7:19
24. Agusti J, Merelo P, Cercos M et al (2009) Comparative transcriptional survey between laser-microdissected cells from laminar abscission zone and petiolar cortical tissue during ethylene-promoted abscission in citrus leaves. BMC Plant Biol 9:127
25. Spencer MWB, Casson SA, Lindsey K (2007) Transcriptional profi ling of the Arabidopsis embryo. Plant Physiol 143:924-940
26. Eberwine J, Yeh H, Miyashiro K et al (1992) Analysis of gene expression in single live neurons. Proc Natl Acad Sci USA 89: 3010-3014
27. Gaude N, Bortfeld S, Duensing N et al (2012) Arbuscule-containing and non-colonized cortical cells of mycorrhizal roots undergo extensive and specifi c reprogramming during arbuscular mycorrhizal development. Plant J 69: 510-528
28. Luo L, Salunga RC, Guo H et al (1999) Gene expression profi les of laser-captured adjacent neuronal subtypes. Nat Med 5: 117-122