메뉴 건너뛰기




Volumn 460, Issue , 2008, Pages 159-183

Microarray probe mapping and annotation in cross-species comparative toxicogenomics

Author keywords

Annotation; Bioinformatics; Cross species; Genomics; Microarray; mRNA

Indexed keywords

RATTUS;

EID: 84934444549     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60327-48-9_8     Document Type: Article
Times cited : (2)

References (24)
  • 1
    • 0022973587 scopus 로고
    • Transcriptional regulation of plasma protein synthesis during inflammation
    • Birch, H. E., and Schreiber, G. (1986) Transcriptional regulation of plasma protein synthesis during inflammation. J. Biol. Chem. 261, 8077-8080.
    • (1986) J. Biol. Chem , vol.261 , pp. 8077-8080
    • Birch, H.E.1    Schreiber, G.2
  • 2
    • 0027441586 scopus 로고
    • Acute-phase response factor, a nuclear factor binding to acute-phase response elements, is rapidly activated by interleukin-6 at the posttranslational level
    • Wegenka, U. M., Buschmann, J., Lutticken, C., Heinrich, P. C., and Horn, F. (1993) Acute-phase response factor, a nuclear factor binding to acute-phase response elements, is rapidly activated by interleukin-6 at the posttranslational level. Mol. Cell. Biol. 13, 276-288.
    • (1993) Mol. Cell. Biol , vol.13 , pp. 276-288
    • Wegenka, U.M.1    Buschmann, J.2    Lutticken, C.3    Heinrich, P.C.4    Horn, F.5
  • 3
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • Fitch, W. M. (1970) Distinguishing homologous from analogous proteins. Syst. Zool. 19, 99-113.
    • (1970) Syst. Zool , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 4
    • 33644787447 scopus 로고    scopus 로고
    • OrthoMCLDB: Querying a comprehensive multi-species collection of ortholog groups
    • Chen, F., Mackey, A. J., Stoeckert, C. J., Jr., and Roos, D. S. (2006) OrthoMCLDB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res. 34, D363-368.
    • (2006) Nucleic Acids Res , vol.34
    • Chen, F.1    Mackey, A.J.2    Stoeckert Jr., C.J.3    Roos, D.S.4
  • 5
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li, L., Stoeckert, C. J., Jr., and Roos, D. S. (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.J.2    Roos, D.S.3
  • 6
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    • Remm, M., Storm, C. E., and Sonnhammer, E. L. (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol. 314, 1041-1052.
    • (2001) J. Mol. Biol , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.2    Sonnhammer, E.L.3
  • 7
    • 0029063327 scopus 로고
    • Cytochrome P450 mediated reactions studied in genetically engineered V79 Chinese hamster cells
    • Spec. No
    • Doehmer, J., Holtkamp, D., Soballa, V., Raab, G., Schmalix, W., Seidel, A., et al. (1995) Cytochrome P450 mediated reactions studied in genetically engineered V79 Chinese hamster cells. Pharmacogenetics 5 (Spec. No.), S91-96.
    • (1995) Pharmacogenetics , vol.5
    • Doehmer, J.1    Holtkamp, D.2    Soballa, V.3    Raab, G.4    Schmalix, W.5    Seidel, A.6
  • 12
    • 13444256478 scopus 로고    scopus 로고
    • Inparanoid: A comprehensive database of eukaryotic orthologs
    • O'Brien, K. P., Remm, M., and Sonnhammer, E. L. (2005) Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res. 33, D476-480.
    • (2005) Nucleic Acids Res , vol.33
    • O'Brien, K.P.1    Remm, M.2    Sonnhammer, E.L.3
  • 14
    • 0036086829 scopus 로고    scopus 로고
    • Annotating the human proteome: The Human Proteome Survey Database (HumanPSD) and an in-depth target database for G protein-coupled receptors (GPCR-PD) from Incyte Genomics
    • Hodges, P. E., Carrico, P. M., Hogan, J. D., O'Neill, K. E., Owen, J. J., Mangan, M., et al. (2002) Annotating the human proteome: the Human Proteome Survey Database (HumanPSD) and an in-depth target database for G protein-coupled receptors (GPCR-PD) from Incyte Genomics. Nucleic Acids Res. 30, 137-141.
    • (2002) Nucleic Acids Res , vol.30 , pp. 137-141
    • Hodges, P.E.1    Carrico, P.M.2    Hogan, J.D.3    O'Neill, K.E.4    Owen, J.J.5    Mangan, M.6
  • 15
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent, W. J. (2002) BLAT-the BLAST-like alignment tool. Genome Res. 12, 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 16
    • 0026512675 scopus 로고
    • Phenobarbital induction of cytochrome P-450 gene expression
    • Waxman, D. J., and Azaroff, L. (1992) Phenobarbital induction of cytochrome P-450 gene expression. Biochem J. 281 (Pt 3), 577-592.
    • (1992) Biochem J , vol.281 , Issue.PART 3 , pp. 577-592
    • Waxman, D.J.1    Azaroff, L.2
  • 17
    • 0021956572 scopus 로고
    • Phenobarbital induction of rat liver cytochromes P-450b and P-450e. Quantitation of specific RNAs by hybridization to synthetic oligodeoxyribonucleotide probes
    • Omiecinski, C. J., Walz, F. G., Jr., and Vlasuk, G. P. (1985) Phenobarbital induction of rat liver cytochromes P-450b and P-450e. Quantitation of specific RNAs by hybridization to synthetic oligodeoxyribonucleotide probes. J. Biol. Chem. 260, 3247-3250.
    • (1985) J. Biol. Chem , vol.260 , pp. 3247-3250
    • Omiecinski, C.J.1    Walz Jr., F.G.2    Vlasuk, G.P.3
  • 19
    • 26844581769 scopus 로고    scopus 로고
    • Catalytic and immunochemical characterization of cytochrome P450 isozyme induction in dog liver
    • Jayyosi, Z., Muc, M., Erick, J., Thomas, P. E., and Kelley, M. (1996) Catalytic and immunochemical characterization of cytochrome P450 isozyme induction in dog liver. Fundam. Appl. Toxicol. 31, 95-102.
    • (1996) Fundam. Appl. Toxicol , vol.31 , pp. 95-102
    • Jayyosi, Z.1    Muc, M.2    Erick, J.3    Thomas, P.E.4    Kelley, M.5
  • 20
    • 0025341142 scopus 로고
    • cDNA and deduced amino acid sequences of a dog hepatic cytochrome P450IIB responsible for the metabolism of 2,2,4,4,5,5-hexachlorobiphenyl
    • Graves, P. E., Elhag, G. A., Ciaccio, P. J., Bourque, D. P., and Halpert, J. R. (1990) cDNA and deduced amino acid sequences of a dog hepatic cytochrome P450IIB responsible for the metabolism of 2,2,4,4,5,5-hexachlorobiphenyl. Arch Biochem. Biophys. 281, 106-115.
    • (1990) Arch Biochem. Biophys , vol.281 , pp. 106-115
    • Graves, P.E.1    Elhag, G.A.2    Ciaccio, P.J.3    Bourque, D.P.4    Halpert, J.R.5
  • 21
    • 0024273519 scopus 로고
    • The metabolism of xenobiotics and endogenous compounds by the constitutive dog liver cytochrome P450 PBD-2
    • Duignan, D. B., Sipes, I. G., Ciaccio, P. J., and Halpert, J. R. (1988) The metabolism of xenobiotics and endogenous compounds by the constitutive dog liver cytochrome P450 PBD-2. Arch Biochem. Biophys. 267, 294-304.
    • (1988) Arch Biochem. Biophys , vol.267 , pp. 294-304
    • Duignan, D.B.1    Sipes, I.G.2    Ciaccio, P.J.3    Halpert, J.R.4
  • 23
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: Current tools, limitations, and open problems
    • Khatri, P., and Draghici, S. (2005) Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics 21, 3587-3595.
    • (2005) Bioinformatics , vol.21 , pp. 3587-3595
    • Khatri, P.1    Draghici, S.2
  • 24
    • 13844318224 scopus 로고    scopus 로고
    • Glyceraldehyde-3-phosphate dehydrogenase, apoptosis, and neurodegenerative diseases
    • Chuang, D. M., Hough, C., and Senatorov, V. V. (2005) Glyceraldehyde-3-phosphate dehydrogenase, apoptosis, and neurodegenerative diseases. Annu. Rev. Pharmacol. Toxicol. 45, 269-290.
    • (2005) Annu. Rev. Pharmacol. Toxicol , vol.45 , pp. 269-290
    • Chuang, D.M.1    Hough, C.2    Senatorov, V.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.