메뉴 건너뛰기




Volumn 944, Issue , 2012, Pages 23-45

Bioinformatics approaches and software for detection of secondary metabolic gene clusters

Author keywords

Antibiotic; Fungi; Gene cluster; Genome; Mycotoxin; Natural product; Nonribosomal peptide; Polyketide; Secondary metabolite; Software

Indexed keywords

AMINOADIPATE SEMIALDEHYDE DEHYDROGENASE; AMINOCOUMARIN DERIVATIVE; AMINOGLYCOSIDE; BACTERIOCIN; BETA LACTAM; INDOLE ALKALOID; LANTIBIOTIC; NUCLEOSIDE; POLYKETIDE; TERPENE;

EID: 84934442432     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-122-6_2     Document Type: Review
Times cited : (52)

References (22)
  • 1
    • 79851507787 scopus 로고    scopus 로고
    • Genomics-inspired discovery of natural products
    • Winter JM, Behnken S, Hertweck C (2011) Genomics-inspired discovery of natural products. Curr Opin Chem Biol 15(1):22-31
    • (2011) Curr Opin Chem Biol , vol.15 , Issue.1 , pp. 22-31
    • Winter, J.M.1    Behnken, S.2    Hertweck, C.3
  • 2
    • 0031079973 scopus 로고    scopus 로고
    • Metabolic pathway gene clusters infilamentous fungi
    • Keller NP, Hohn TM (1997) Metabolic pathway gene clusters infilamentous fungi. Fungal Genet Biol 21(1):17-29
    • (1997) Fungal Genet Biol , vol.21 , Issue.1 , pp. 17-29
    • Keller, N.P.1    Hohn, T.M.2
  • 5
    • 61649111711 scopus 로고    scopus 로고
    • CLUSEAN: A computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters
    • Weber T, Rausch C, Lopez P, Hoof I, Gaykova V, Huson DH, Wohlleben W (2009) CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters. J Biotechnol 140(1-2):13-17
    • (2009) J Biotechnol , vol.140 , Issue.1-2 , pp. 13-17
    • Weber, T.1    Rausch, C.2    Lopez, P.3    Hoof, I.4    Gaykova, V.5    Huson, D.H.6    Wohlleben, W.7
  • 6
    • 57149112966 scopus 로고    scopus 로고
    • ClustScan: An integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures
    • Starcevic A, Zucko J, Simunkovic J, Long PF, Cullum J, Hranueli D (2008) ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures. Nucleic Acids Res 36(21): 6882-6892
    • (2008) Nucleic Acids Res , vol.36 , Issue.21 , pp. 6882-6892
    • Starcevic, A.1    Zucko, J.2    Simunkovic, J.3    Long, P.F.4    Cullum, J.5    Hranueli, D.6
  • 12
    • 8844252293 scopus 로고    scopus 로고
    • TigrScan and GlimmerHMM: Two open source ab initio eukaryotic gene-finders
    • Majoros WH, Pertea M, Salzberg SL (2004) TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics 20(16):2878-2879
    • (2004) Bioinformatics , vol.20 , Issue.16 , pp. 2878-2879
    • Majoros, W.H.1    Pertea, M.2    Salzberg, S.L.3
  • 13
    • 34147132825 scopus 로고    scopus 로고
    • Identifying bacterial genes and endosymbiont DNA with Glimmer
    • Delcher AL, Bratke KA, Powers EC, Salzberg SL (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23(6):673-679
    • (2007) Bioinformatics , vol.23 , Issue.6 , pp. 673-679
    • Delcher, A.L.1    Bratke, K.A.2    Powers, E.C.3    Salzberg, S.L.4
  • 17
    • 0037249633 scopus 로고    scopus 로고
    • The TIGRFAMs database of protein families
    • Haft DH, Selengut JD, White O (2003) The TIGRFAMs database of protein families. Nucleic Acids Res 31(1):371-373
    • (2003) Nucleic Acids Res , vol.31 , Issue.1 , pp. 371-373
    • Haft, D.H.1    Selengut, J.D.2    White, O.3
  • 20
    • 79958701818 scopus 로고    scopus 로고
    • A practical guide to fungal genome projects
    • Ma L-J, Fedorova ND (2010) A practical guide to fungal genome projects. Mycol Int J Fungal Biol 1(1):9-24
    • (2010) Mycol Int J Fungal Biol , vol.1 , Issue.1 , pp. 9-24
    • Ma, L.-J.1    Fedorova, N.D.2
  • 22
    • 72949098828 scopus 로고    scopus 로고
    • Identification of two a flatrem biosynthesis genelociin Aspergillus flavus and metabolic engineering of Penicillium paxilli to elucidate their function
    • Nicholson MJ, Koulman A, Monahan BJ, Pritchard BL, Payne GA, Scott B (2009) Identification of two a fl atrem biosynthesis gene loci in Aspergillus fl avus and metabolic engineering of Penicillium paxilli to elucidate their function. Appl Environ Microbiol 75(23): 7469-7481
    • (2009) Appl Environ Microbiol , vol.75 , Issue.23 , pp. 7469-7481
    • Nicholson, M.J.1    Koulman, A.2    Monahan, B.J.3    Pritchard, B.L.4    Payne, G.A.5    Scott, B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.