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Volumn 162, Issue 1, 2015, Pages 211-220

Quantifying Protein-mRNA Interactions in Single Live Cells

Author keywords

beta actin mRNA; fluorescence fluctuation spectroscopy; ribosomes; translational regulation; ZBP1

Indexed keywords

BETA ACTIN; BINDING PROTEIN; MESSENGER RNA; RIBOSOME PROTEIN; RPL10A PROTEIN; UNCLASSIFIED DRUG; ZIPCODE BINDING PROTEIN 1; ACTIN; GLYCOPROTEIN; ZBP1 PROTEIN, MOUSE;

EID: 84934277649     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2015.05.054     Document Type: Article
Times cited : (75)

References (47)
  • 3
    • 84892902609 scopus 로고    scopus 로고
    • Single β-actin mRNA detection in neurons reveals a mechanism for regulating its translatability
    • A.R. Buxbaum, B. Wu, and R.H. Singer Single β-actin mRNA detection in neurons reveals a mechanism for regulating its translatability Science 343 2014 419 422
    • (2014) Science , vol.343 , pp. 419-422
    • Buxbaum, A.R.1    Wu, B.2    Singer, R.H.3
  • 4
    • 84923198503 scopus 로고    scopus 로고
    • In the right place at the right time: Visualizing and understanding mRNA localization
    • A.R. Buxbaum, G. Haimovich, and R.H. Singer In the right place at the right time: visualizing and understanding mRNA localization Nat. Rev. Mol. Cell Biol. 16 2015 95 109
    • (2015) Nat. Rev. Mol. Cell Biol. , vol.16 , pp. 95-109
    • Buxbaum, A.R.1    Haimovich, G.2    Singer, R.H.3
  • 7
    • 0346734134 scopus 로고    scopus 로고
    • Probing protein oligomerization in living cells with fluorescence fluctuation spectroscopy
    • Y. Chen, L.N. Wei, and J.D. Müller Probing protein oligomerization in living cells with fluorescence fluctuation spectroscopy Proc. Natl. Acad. Sci. USA 100 2003 15492 15497
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 15492-15497
    • Chen, Y.1    Wei, L.N.2    Müller, J.D.3
  • 10
    • 0032560007 scopus 로고    scopus 로고
    • A highly conserved RNA-binding protein for cytoplasmic mRNA localization in vertebrates
    • J.O. Deshler, M.I. Highett, T. Abramson, and B.J. Schnapp A highly conserved RNA-binding protein for cytoplasmic mRNA localization in vertebrates Curr. Biol. 8 1998 489 496
    • (1998) Curr. Biol. , vol.8 , pp. 489-496
    • Deshler, J.O.1    Highett, M.I.2    Abramson, T.3    Schnapp, B.J.4
  • 12
    • 79953755729 scopus 로고    scopus 로고
    • Lessons in fluctuation correlation spectroscopy
    • M.A. Digman, and E. Gratton Lessons in fluctuation correlation spectroscopy Annu. Rev. Phys. Chem. 62 2011 645 668
    • (2011) Annu. Rev. Phys. Chem. , vol.62 , pp. 645-668
    • Digman, M.A.1    Gratton, E.2
  • 13
    • 17844394185 scopus 로고    scopus 로고
    • Fluctuation correlation spectroscopy with a laser-scanning microscope: Exploiting the hidden time structure
    • M.A. Digman, P. Sengupta, P.W. Wiseman, C.M. Brown, A.R. Horwitz, and E. Gratton Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure Biophys. J. 88 2005 L33 L36
    • (2005) Biophys. J. , vol.88 , pp. L33-L36
    • Digman, M.A.1    Sengupta, P.2    Wiseman, P.W.3    Brown, C.M.4    Horwitz, A.R.5    Gratton, E.6
  • 14
    • 0032562720 scopus 로고    scopus 로고
    • Visualization of single RNA transcripts in situ
    • A.M. Femino, F.S. Fay, K. Fogarty, and R.H. Singer Visualization of single RNA transcripts in situ Science 280 1998 585 590
    • (1998) Science , vol.280 , pp. 585-590
    • Femino, A.M.1    Fay, F.S.2    Fogarty, K.3    Singer, R.H.4
  • 15
    • 84863275899 scopus 로고    scopus 로고
    • Regulation of local expression of cell adhesion and motility-related mRNAs in breast cancer cells by IMP1/ZBP1
    • W. Gu, Z. Katz, B. Wu, H.Y. Park, D. Li, S. Lin, A.L. Wells, and R.H. Singer Regulation of local expression of cell adhesion and motility-related mRNAs in breast cancer cells by IMP1/ZBP1 J. Cell Sci. 125 2012 81 91
    • (2012) J. Cell Sci. , vol.125 , pp. 81-91
    • Gu, W.1    Katz, Z.2    Wu, B.3    Park, H.Y.4    Li, D.5    Lin, S.6    Wells, A.L.7    Singer, R.H.8
  • 20
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • N.T. Ingolia, S. Ghaemmaghami, J.R. Newman, and J.S. Weissman Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling Science 324 2009 218 223
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 21
    • 84909607974 scopus 로고    scopus 로고
    • Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling
    • C.H. Jan, C.C. Williams, and J.S. Weissman Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling Science 346 2014 1257521
    • (2014) Science , vol.346 , pp. 1257521
    • Jan, C.H.1    Williams, C.C.2    Weissman, J.S.3
  • 22
    • 84865851827 scopus 로고    scopus 로고
    • β-Actin mRNA compartmentalization enhances focal adhesion stability and directs cell migration
    • Z.B. Katz, A.L. Wells, H.Y. Park, B. Wu, S.M. Shenoy, and R.H. Singer β-Actin mRNA compartmentalization enhances focal adhesion stability and directs cell migration Genes Dev. 26 2012 1885 1890
    • (2012) Genes Dev. , vol.26 , pp. 1885-1890
    • Katz, Z.B.1    Wells, A.L.2    Park, H.Y.3    Wu, B.4    Shenoy, S.M.5    Singer, R.H.6
  • 23
    • 22244464837 scopus 로고    scopus 로고
    • Two-photon cross-correlation analysis of intracellular reactions with variable stoichiometry
    • S.A. Kim, K.G. Heinze, K. Bacia, M.N. Waxham, and P. Schwille Two-photon cross-correlation analysis of intracellular reactions with variable stoichiometry Biophys. J. 88 2005 4319 4336
    • (2005) Biophys. J. , vol.88 , pp. 4319-4336
    • Kim, S.A.1    Heinze, K.G.2    Bacia, K.3    Waxham, M.N.4    Schwille, P.5
  • 24
    • 0028027909 scopus 로고
    • Sequences responsible for intracellular localization of beta-actin messenger RNA also affect cell phenotype
    • E.H. Kislauskis, X. Zhu, and R.H. Singer Sequences responsible for intracellular localization of beta-actin messenger RNA also affect cell phenotype J. Cell Biol. 127 1994 441 451
    • (1994) J. Cell Biol. , vol.127 , pp. 441-451
    • Kislauskis, E.H.1    Zhu, X.2    Singer, R.H.3
  • 26
    • 0022497718 scopus 로고
    • Intracellular localization of messenger RNAs for cytoskeletal proteins
    • J.B. Lawrence, and R.H. Singer Intracellular localization of messenger RNAs for cytoskeletal proteins Cell 45 1986 407 415
    • (1986) Cell , vol.45 , pp. 407-415
    • Lawrence, J.B.1    Singer, R.H.2
  • 27
    • 84867654659 scopus 로고    scopus 로고
    • Molecular brightness analysis reveals phosphatidylinositol 4-Kinase IIβ association with clathrin-coated vesicles in living cells
    • J. Li, B. Barylko, J. Johnson, J.D. Mueller, J.P. Albanesi, and Y. Chen Molecular brightness analysis reveals phosphatidylinositol 4-Kinase IIβ association with clathrin-coated vesicles in living cells Biophys. J. 103 2012 1657 1665
    • (2012) Biophys. J. , vol.103 , pp. 1657-1665
    • Li, J.1    Barylko, B.2    Johnson, J.3    Mueller, J.D.4    Albanesi, J.P.5    Chen, Y.6
  • 29
    • 77955680299 scopus 로고    scopus 로고
    • Brightness analysis by Z-scan fluorescence fluctuation spectroscopy for the study of protein interactions within living cells
    • P.J. Macdonald, Y. Chen, X. Wang, Y. Chen, and J.D. Mueller Brightness analysis by Z-scan fluorescence fluctuation spectroscopy for the study of protein interactions within living cells Biophys. J. 99 2010 979 988
    • (2010) Biophys. J. , vol.99 , pp. 979-988
    • Macdonald, P.J.1    Chen, Y.2    Wang, X.3    Chen, Y.4    Mueller, J.D.5
  • 30
    • 84884856342 scopus 로고    scopus 로고
    • Cas9 as a versatile tool for engineering biology
    • P. Mali, K.M. Esvelt, and G.M. Church Cas9 as a versatile tool for engineering biology Nat. Methods 10 2013 957 963
    • (2013) Nat. Methods , vol.10 , pp. 957-963
    • Mali, P.1    Esvelt, K.M.2    Church, G.M.3
  • 33
    • 84861123291 scopus 로고    scopus 로고
    • An unbiased analysis method to quantify mRNA localization reveals its correlation with cell motility
    • H.Y. Park, T. Trcek, A.L. Wells, J.A. Chao, and R.H. Singer An unbiased analysis method to quantify mRNA localization reveals its correlation with cell motility Cell Rep. 1 2012 179 184
    • (2012) Cell Rep. , vol.1 , pp. 179-184
    • Park, H.Y.1    Trcek, T.2    Wells, A.L.3    Chao, J.A.4    Singer, R.H.5
  • 34
    • 0027217936 scopus 로고
    • Quantitation of membrane receptor distributions by image correlation spectroscopy: Concept and application
    • N.O. Petersen, P.L. Höddelius, P.W. Wiseman, O. Seger, and K.E. Magnusson Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application Biophys. J. 65 1993 1135 1146
    • (1993) Biophys. J. , vol.65 , pp. 1135-1146
    • Petersen, N.O.1    Höddelius, P.L.2    Wiseman, P.W.3    Seger, O.4    Magnusson, K.E.5
  • 36
    • 79551678673 scopus 로고    scopus 로고
    • Oligomerization state of dynamin 2 in cell membranes using TIRF and number and brightness analysis
    • J.A. Ross, M.A. Digman, L. Wang, E. Gratton, J.P. Albanesi, and D.M. Jameson Oligomerization state of dynamin 2 in cell membranes using TIRF and number and brightness analysis Biophys. J. 100 2011 L15 L17
    • (2011) Biophys. J. , vol.100 , pp. L15-L17
    • Ross, J.A.1    Digman, M.A.2    Wang, L.3    Gratton, E.4    Albanesi, J.P.5    Jameson, D.M.6
  • 37
    • 34247628002 scopus 로고    scopus 로고
    • Iron-regulatory proteins limit hypoxia-inducible factor-2alpha expression in iron deficiency
    • M. Sanchez, B. Galy, M.U. Muckenthaler, and M.W. Hentze Iron-regulatory proteins limit hypoxia-inducible factor-2alpha expression in iron deficiency Nat. Struct. Mol. Biol. 14 2007 420 426
    • (2007) Nat. Struct. Mol. Biol. , vol.14 , pp. 420-426
    • Sanchez, M.1    Galy, B.2    Muckenthaler, M.U.3    Hentze, M.W.4
  • 38
    • 72249098633 scopus 로고    scopus 로고
    • Diffusion, transport, and cell membrane organization investigated by imaging fluorescence cross-correlation spectroscopy
    • J. Sankaran, M. Manna, L. Guo, R. Kraut, and T. Wohland Diffusion, transport, and cell membrane organization investigated by imaging fluorescence cross-correlation spectroscopy Biophys. J. 97 2009 2630 2639
    • (2009) Biophys. J. , vol.97 , pp. 2630-2639
    • Sankaran, J.1    Manna, M.2    Guo, L.3    Kraut, R.4    Wohland, T.5
  • 39
    • 0030895059 scopus 로고    scopus 로고
    • Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution
    • P. Schwille, F.J. Meyer-Almes, and R. Rigler Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution Biophys. J. 72 1997 1878 1886
    • (1997) Biophys. J. , vol.72 , pp. 1878-1886
    • Schwille, P.1    Meyer-Almes, F.J.2    Rigler, R.3
  • 40
    • 0242497663 scopus 로고    scopus 로고
    • CLIP identifies Nova-regulated RNA networks in the brain
    • J. Ule, K.B. Jensen, M. Ruggiu, A. Mele, A. Ule, and R.B. Darnell CLIP identifies Nova-regulated RNA networks in the brain Science 302 2003 1212 1215
    • (2003) Science , vol.302 , pp. 1212-1215
    • Ule, J.1    Jensen, K.B.2    Ruggiu, M.3    Mele, A.4    Ule, A.5    Darnell, R.B.6
  • 41
    • 25844509975 scopus 로고    scopus 로고
    • Time-integrated fluorescence cumulant analysis in fluorescence fluctuation spectroscopy
    • B. Wu, and J.D. Müller Time-integrated fluorescence cumulant analysis in fluorescence fluctuation spectroscopy Biophys. J. 89 2005 2721 2735
    • (2005) Biophys. J. , vol.89 , pp. 2721-2735
    • Wu, B.1    Müller, J.D.2
  • 42
    • 33749445057 scopus 로고    scopus 로고
    • Dual-color time-integrated fluorescence cumulant analysis
    • B. Wu, Y. Chen, and J.D. Müller Dual-color time-integrated fluorescence cumulant analysis Biophys. J. 91 2006 2687 2698
    • (2006) Biophys. J. , vol.91 , pp. 2687-2698
    • Wu, B.1    Chen, Y.2    Müller, J.D.3
  • 43
    • 66149096239 scopus 로고    scopus 로고
    • Fluorescence fluctuation spectroscopy of mCherry in living cells
    • B. Wu, Y. Chen, and J.D. Müller Fluorescence fluctuation spectroscopy of mCherry in living cells Biophys. J. 96 2009 2391 2404
    • (2009) Biophys. J. , vol.96 , pp. 2391-2404
    • Wu, B.1    Chen, Y.2    Müller, J.D.3
  • 44
    • 77749233766 scopus 로고    scopus 로고
    • Heterospecies partition analysis reveals binding curve and stoichiometry of protein interactions in living cells
    • B. Wu, Y. Chen, and J.D. Müller Heterospecies partition analysis reveals binding curve and stoichiometry of protein interactions in living cells Proc. Natl. Acad. Sci. USA 107 2010 4117 4122
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 4117-4122
    • Wu, B.1    Chen, Y.2    Müller, J.D.3
  • 45
    • 84862675282 scopus 로고    scopus 로고
    • Fluorescence fluctuation spectroscopy enables quantitative imaging of single mRNAs in living cells
    • B. Wu, J.A. Chao, and R.H. Singer Fluorescence fluctuation spectroscopy enables quantitative imaging of single mRNAs in living cells Biophys. J. 102 2012 2936 2944
    • (2012) Biophys. J. , vol.102 , pp. 2936-2944
    • Wu, B.1    Chao, J.A.2    Singer, R.H.3
  • 46
    • 13544262618 scopus 로고    scopus 로고
    • VICKZ proteins: A multi-talented family of regulatory RNA-binding proteins
    • J.K. Yisraeli VICKZ proteins: a multi-talented family of regulatory RNA-binding proteins Biol. Cell 97 2005 87 96
    • (2005) Biol. Cell , vol.97 , pp. 87-96
    • Yisraeli, J.K.1
  • 47
    • 0033523768 scopus 로고    scopus 로고
    • Neurotrophin regulation of beta-actin mRNA and protein localization within growth cones
    • H.L. Zhang, R.H. Singer, and G.J. Bassell Neurotrophin regulation of beta-actin mRNA and protein localization within growth cones J. Cell Biol. 147 1999 59 70
    • (1999) J. Cell Biol. , vol.147 , pp. 59-70
    • Zhang, H.L.1    Singer, R.H.2    Bassell, G.J.3


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