QTL for seed protein and amino acids in the Benning × Danbaekkong soybean population

Theoretical and Applied Genetics

Volumn 128, Issue 5, 2015, Pages 839-850

  Warrington, C V ^a,f   Abdel Haleem, H ^a,b   Hyten, D L ^c,f,g   Cregan, P B ^c   Orf, J H ^e   Killam, A S ^e   Bajjalieh, N ^d   Li, Z ^a   Boerma, H R ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

^d Integrative Nutrition Inc   (United States)

^e UNIVERSITY OF MINNESOTA   (United States)

^f Schillinger Genetics Inc   (United States)

^g DUPONT COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; INFRARED DEVICES; NEAR INFRARED SPECTROSCOPY; PROTEINS;

ACID CONCENTRATIONS; ESSENTIAL AMINO ACIDS; INFORMATION CONCERNING; MARKER-ASSISTED SELECTION; NEAR INFRARED REFLECTANCE SPECTROSCOPY; PHENOTYPIC VARIATIONS; PROTEIN CONCENTRATIONS; QUANTITATIVE TRAIT LOCUS;

AMINO ACIDS;

AMINO ACID; CYSTEINE; LYSINE; METHIONINE; MICROSATELLITE DNA; SEED STORAGE PROTEIN; THREONINE;

GENETIC LINKAGE; GENETICS; PHENOTYPE; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM; SOYBEAN;

AMINO ACIDS; CYSTEINE; GENETIC LINKAGE; LYSINE; METHIONINE; MICROSATELLITE REPEATS; PHENOTYPE; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT LOCI; SEED STORAGE PROTEINS; SOYBEANS; THREONINE;

EID: 84934268282     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-015-2474-4     Document Type: Article

References (61)

1. Annicchiarico P (2002) Genotype × environment interactions: challenges and opportunities for plant breeding and cultivar recommendations. Food & Agriculture Org
2. Bajjalieh N (2004) Proteins from oilseeds. In: Proceedings on Protein sources for the animal feed industry. Expert consultation and workshop, Bangkok
3. Boerma HR, Hussey RS, Phillips DV, Wood ED, Rowan GB, Finnerty SL (1997) Registration of ‘Benning’ soybean. Crop Sci 37:1982
4. Boerma H, Hussey R, Phillips D, Wood E, Rowan G, Finnerty S (2000) Registration of ’Boggs’ soybean. Crop Sci 40(1):294–295
5. Brim C (1966) A modified pedigree system of selection in soybeans. Crop Sci 6:220
6. Brummer E, Graef G, Orf J, Wilcox J, Shoemaker R (1997) Mapping QTL for seed protein and oil content in eight soybean populations. Crop Sci 37(2):370–377
7. Burton J, Wilson T (1998) Registration of ‘Prolina’soybean. Crop Sci 39(1):294
8. Burton J, Carter T Jr, Bowman D (2005) Registration of NC-Roy soybean. Crop Sci 45:2654
9. Chung J, Babka H, Graef G, Staswick P, Lee D, Cregan P, Shoemaker R, Specht J (2003) The seed protein, oil, and yield QTL on soybean linkage group I. Crop Sci 43(3):1053
10. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138(3):963
11. Clarke E, Wiseman J (2000) Developments in plant breeding for improved nutritional quality of soya beans I. Protein and amino acid content. The Journal of Agricultural Science 134(02):111–124
12. Council NR (1994) Nutrient Requirements of Poultry. National Academy Press, Washington
13. Council NR (ed) (1998) Nutrient Requirements of Swine, 10th edn. National Academy Press, Washington
14. Cuesta-Marcos A, Casas AM, Hayes PM, Gracia MP, Lasa JM, Ciudad F, Codesal P, Molina-Cano JL, Igartua E (2009) Yield QTL affected by heading date in Mediterranean grown barley. Plant Breeding 128(1):46–53
15. Danielsson C (1949) Seed globulins of the Gramineae and Leguminosae. Biochem J 44(4):387
16. Diers B, Keim P, Fehr W, Shoemaker R (1992) RFLP analysis of soybean seed protein and oil content. Theor Appl Genet 83(5):608–612
17. Diwan N, Cregan P (1997) Automated sizing of fluorescent-labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean. TheorApplGen 95(5):723–733
18. Edwards H 3rd, Douglas M, Parsons C, Baker D (2000) Protein and energy evaluation of soybean meals processed from genetically modified high-protein soybeans. Poult Sci 79(4):525
19. Falconer D, Mackay T (1996) Introduction to quantitative genetics (1996). Longman, Essex
20. Fallen B, Hatcher C, Allen F, Kopsell D, Saxton A, Chen P, Kantartzi S, Cregan P, Hyten D, Pantalone V (2013) Soybean Seed Amino Acid Content QTL Detected Using the Universal Soy Linkage Panel 1.0 with 1,536 SNPs. J Plant Genome Sci 1(3):68–79
21. Friedman M, Brandon D (2001) Nutritional and Health Benefits of Soy Proteins. J Agric Food Chem 49(3):1069–1086
22. George AA, De Lumen BO (1991) A novel methionine-rich protein in soybean seed: identification, amino acid composition, and N-terminal sequence. J Agric Food Chem 39(1):224–227
23. Grant D, Imsande MI, Shoemaker RC (2002) SoyBase, the USDA-ARS soybean genome database. http://soybase.org. Accessed 8 Feb 2015
24. Hyten D, Song Q, Choi I, Yoon M, Specht J, Matukumalli L, Nelson R, Shoemaker R, Young N, Cregan P (2008) High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor Appl Genet 116(7):945–952
25. Hyten D, Choi I, Song Q, Specht J, Carter Jr T, Shoemaker R, Hwang E, Matukumalli L, Cregan P (2010a) A high density integrated genetic linkage map of soybean and the development of a 1536 universal soy linkage panel for quantitative trait locus mapping
26. Hyten DL, Choi IY, Song Q, Specht JE, Carter TE Jr, Shoemaker RC, Hwang EY, Matukumalli LK, Cregan PB (2010b) A high density integrated genetic linkage map of soybean and the development of a 1536 universal soy linkage panel for quantitative trait locus mapping. Crop Sci 50(3):960–968
27. Imsande J (2001) Selection of soybean mutants with increased concentrations of seed methionine and cysteine. Crop Sci 41(2):510–515
28. Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136(4):1447
29. Keim P, Shoemaker RC, Palmer RG (1989) Restriction fragment length polymorphism diversity in soybean. Theorical and Applied Genetics 77:786–792
30. Kerley MS, Allee GL (2003) Modifications in soybean seed composition to enhance animal feed use and value: moving from a dietary ingredient to a functional dietary component. AgBioForum 6(1&2):14–17. http://www.agbioforum.org. Accessed 8 Feb 2015
31. Kim S-D, Hong E-H, Kim Y-H, Lee S-H, Seong Y-K, Park K-Y, Lee Y-H, Hwang Y-H, Park E-H, Kim H-S, Ryu Y-H, Park R-K, Kim Y-S (1996) A new high protein and good seed quality soybean variety “Danbaegkong”. RDA J Agri Sci Upl Ind Crops 38:228–232
32. Kosambi D (1944) The estimation of map distances from recombination values. Ann Eugen 12(1944):172–175
33. Krober O (1956) Nutritive quality of crops, methionine content of soybeans as influenced by location and season. J Agric Food Chem 4(3):254–257
34. Lorieux M (2012) MapDisto: fast and efficient computation of genetic linkage maps. Mol Breed 30:1231–1235. doi:10.1007/s11032-012-9706-y
35. Lyttle TW (1991) Segregation distorters. Annu Rev Genet 25(1):511–581
36. Mansur L, Lark K, Kross H, Oliveira A (1993) Interval mapping of quantitative trait loci for reproductive, morphological, and seed traits of soybean (Glycine max L.). TAG. Theor Appl Genet 86(8):907–913
37. Martin OC (2006) Two-and three-locus tests for linkage analysis using recombinant inbred lines. Genetics 173(1):451
38. Nichols D, Glover K, Carlson S, Specht J, Diers B (2006) Fine mapping of a seed protein QTL on soybean linkage group I and its correlated effects on agronomic traits. Crop Sci 46(2):834
39. Nyquist W, Baker R (1991) Estimation of heritability and prediction of selection response in plant populations. Crit Rev Plant Sci 10(3):235–322
40. Panthee D, Kwanyuen P, Sams C, West D, Saxton A, Pantalone V (2004) Quantitative trait loci for β-conglycinin (7S) and glycinin (11S) fractions of soybean storage protein. J Am Oil Chem Soc 81(11):1005–1012
41. Panthee D, Pantalone V, Sams C, Saxton A, West D, Orf J, Killam A (2006a) Quantitative trait loci controlling sulfur containing amino acids, methionine and cysteine, in soybean seeds. Theor Appl Genet 112(3):546–553
42. Panthee D, Pantalone V, Saxton A, West D, Sams C (2006b) Genomic regions associated with amino acid composition in soybean. Mol Breeding 17(1):79–89
43. Rajcan I, Hou G, Weir A (2005) Advances in breeding of seed-quality traits in soybean. J Crop Improv 14(1):145–174
44. Sallstrom JR (2002) Better Bean Initiative (BBI)—a tool to enhance competitiveness for the US soybean producer. In: Biennial Conference of the Cellular and Molecular Biology of the Soybean, Urbana-Champaign, 11–14 Aug 2002
45. Sebolt A, Shoemaker R, Diers B (2000) Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean. Crop Sci 40(5):1438
46. Serretti C, Schapaugh W Jr, Leffel R (1994) Amino acid profile of high seed protein soybean. Crop Sci 34(1):207
47. Sexton P, Naeve S, Paek N, Shibles R (1998a) Sulfur availability, cotyledon nitrogen: sulfur ratio, and relative abundance of seed storage proteins of soybean. Crop Sci 38(4):983–986
48. Sexton PJ, Paek NC, Shibles RM (1998b) Effects of nitrogen source and timing of sulfur deficiency on seed yield and expression of 11S and 7S seed storage proteins of soybean. Field Crops Res 59(1):1–8
49. Sexton P, Paek N, Naeve S, Shibles R (2002) Sulfur metabolism and protein quality of soybean. J Crop Prod 5(1):285–308
50. Shen B, Li C, Tarczynski MC (2002) High free methionine and decreased lignin content result from a mutation in the Arabidopsis S-adenosyl L-methionine synthetase 3 gene. Plant J 29(3):371–380
51. Shewry P, Napier J, Tatham A (1995) Seed storage proteins: structures and biosynthesis. The Plant Cell Online 7(7):945
52. Singh K, Ghai M, Garg M, Chhuneja P, Kaur P, Schnurbusch T, Keller B, Dhaliwal H (2007) An integrated molecular linkage map of diploid wheat based on a Triticum boeoticum × T. monococcum RIL population. Theor Appl Genet 115(3):301–312
53. Sirithunya P, Tragoonrung S, Vanavichit A, Pa-In N, Vongsaprom C, Toojinda T (2002) Quantitative trait loci associated with leaf and neck blast resistance in recombinant inbred line population of rice (Oryza sativa). DNA Res 9(3):79–88
54. Wang S, Basten CJ, Zeng Z-B (2012) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC. http://statgen.ncsu.edu/qtlcart/WQTLCart.htm
55. Weber C, Fehr W (1970) Registration of Provar soybeans. Crop Sci 10:728
56. Wilcox J, Shibles R (2001) Interrelationships among seed quality attributes in soybean. Crop Sci 41(1):11
57. Wilson R (2004) Seed composition. Soybeans Improv Prod Uses 3:621–677
58. Xu Y, Zhu L, Xiao J, Huang N, McCouch S (1997) Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol Gen Genet MGG 253(5):535–545
59. Yaklich R (2001) [beta]-Conglycinin and glycinin in high-protein soybean seeds. J Agric Food Chem 49(2):729–735
60. Yaklich R, Helm R, Cockrell G, Herman E (1999) Analysis of the distribution of the major soybean seed allergens in a core collection of Glycine max accessions. Crop Sci 39(5):1444
61. Zeng ZB, Kao CH, Basten CJ (1999) Estimating the genetic architecture of quantitative traits. Genet Res 74(03):279–289