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Volumn 18, Issue 11, 2014, Pages 722-735

The Use of Next-Generation Sequencing in Molecular Diagnosis of Neurofibromatosis Type 1: A Validation Study

Author keywords

[No Author keywords available]

Indexed keywords

CLINICAL TRIAL; EXON; FEMALE; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; MALE; MOLECULAR DIAGNOSIS; MULTICENTER STUDY; MUTATION; NEUROFIBROMATOSIS TYPE 1; NUCLEOTIDE SEQUENCE; PROCEDURES; TUMOR SUPPRESSOR GENE; VALIDATION STUDY;

EID: 84933518597     PISSN: 19450265     EISSN: 19450257     Source Type: Journal    
DOI: 10.1089/gtmb.2014.0109     Document Type: Article
Times cited : (32)

References (48)
  • 1
    • 0030906364 scopus 로고    scopus 로고
    • NF1 mutation analysis using a combined heteroduplex/SSCP approach
    • Abernathy CR, Rasmussen SA, Stalker HJ, et al. (1997) NF1 mutation analysis using a combined heteroduplex/SSCP approach. Hum Mutat 9:548–554.
    • (1997) Hum Mutat , vol.9 , pp. 548-554
    • Abernathy, CR1    Rasmussen, SA2    Stalker, HJ3
  • 2
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei IA, Schmidt S, Peshkin L, et al. (2010) A method and server for predicting damaging missense mutations. Nat Methods 7:248–249.
    • (2010) Nat Methods , vol.7 , pp. 248-249
    • Adzhubei, IA1    Schmidt, S2    Peshkin, L3
  • 3
    • 49149115868 scopus 로고    scopus 로고
    • The RAS/MAPK syndromes: novel roles of the RAS pathway in human genetic disorders
    • Aoki Y, Niihori T, Narumi Y, et al. (2008) The RAS/MAPK syndromes: novel roles of the RAS pathway in human genetic disorders. Hum Mutat 29:992–1006.
    • (2008) Hum Mutat , vol.29 , pp. 992-1006
    • Aoki, Y1    Niihori, T2    Narumi, Y3
  • 4
    • 33846696108 scopus 로고    scopus 로고
    • Screening for CHARGE syndrome mutations in the CHD7 gene using denaturing high-performance liquid chromatography
    • Aramaki M, Udaka T, Torii C, et al. (2006) Screening for CHARGE syndrome mutations in the CHD7 gene using denaturing high-performance liquid chromatography. Genet Test Mol Biomarkers 10:244–251.
    • (2006) Genet Test Mol Biomarkers , vol.10 , pp. 244-251
    • Aramaki, M1    Udaka, T2    Torii, C3
  • 5
    • 0038481667 scopus 로고    scopus 로고
    • Recurrent mutations in the NF1 gene are common among neurofibromatosis type 1 patients
    • Ars E, Kruyer H, Morell M, et al. (2003) Recurrent mutations in the NF1 gene are common among neurofibromatosis type 1 patients. J Med Genet 40:e82.
    • (2003) J Med Genet , vol.40 , pp. e82
    • Ars, E1    Kruyer, H2    Morell, M3
  • 6
    • 34447114512 scopus 로고    scopus 로고
    • Germline NF1 mutational spectra and loss-of-heterozygosity analyses in patients with pheochromocytoma and neurofibromatosis type 1
    • Bausch B, Borozdin W, Mautner VF, et al. (2007) Germline NF1 mutational spectra and loss-of-heterozygosity analyses in patients with pheochromocytoma and neurofibromatosis type 1. J Clin Endocrinol Metab 92:2784–2792.
    • (2007) J Clin Endocrinol Metab , vol.92 , pp. 2784-2792
    • Bausch, B1    Borozdin, W2    Mautner, VF3
  • 7
    • 0033605479 scopus 로고    scopus 로고
    • Neurofibromatosis type 1: A model condition for the study of the molecular basis of variable expressivity in human disorders
    • Carey JC, Viskochil DH (1999) Neurofibromatosis type 1: A model condition for the study of the molecular basis of variable expressivity in human disorders. Am J Med Genet 89:7–13.
    • (1999) Am J Med Genet , vol.89 , pp. 7-13
    • Carey, JC1    Viskochil, DH2
  • 8
    • 84903879868 scopus 로고    scopus 로고
    • Performance comparison of four exome capture systems for deep sequencing
    • Chilamakuri CS, Lorenz S, Madoui MA, et al. (2014) Performance comparison of four exome capture systems for deep sequencing. BMC Genomics 15:449.
    • (2014) BMC Genomics , vol.15 , pp. 449
    • Chilamakuri, CS1    Lorenz, S2    Madoui, MA3
  • 9
    • 84961384870 scopus 로고    scopus 로고
    • Frequently asked questions about the clinical utility of next-generation sequencing in molecular diagnosis of human genetic diseases
    • Wong L-JC (ed) Springer Science Business Media, New York
    • Chin E, Zhang V, Wang J, et al. (2013) Frequently asked questions about the clinical utility of next-generation sequencing in molecular diagnosis of human genetic diseases. In: Wong L-JC (ed) Next Generation Sequencing: Translation to Clinical Diagnostics. Springer Science + Business Media, New York, pp 287–299.
    • (2013) Next Generation Sequencing: Translation to Clinical Diagnostics , pp. 287-299
    • Chin, E1    Zhang, V2    Wang, J3
  • 10
    • 69749122314 scopus 로고    scopus 로고
    • Identification of deleterious mutations within three human genomes
    • Chun S, Fay JC (2009) Identification of deleterious mutations within three human genomes. Genome Res 19:1553–1561.
    • (2009) Genome Res , vol.19 , pp. 1553-1561
    • Chun, S1    Fay, JC2
  • 13
    • 37249043142 scopus 로고    scopus 로고
    • Deletions of NF1 gene and exons detected by multiplex ligation-dependent probe amplification
    • De Luca A, Bottillo I, Dasdia MC, et al. (2007) Deletions of NF1 gene and exons detected by multiplex ligation-dependent probe amplification. J Med Genet 44:800–808.
    • (2007) J Med Genet , vol.44 , pp. 800-808
    • De Luca, A1    Bottillo, I2    Dasdia, MC3
  • 14
    • 0033924917 scopus 로고    scopus 로고
    • Minor lesion mutational spectrum of the entire NF1 gene does not explain its high mutability but points to a functional domain upstream of the GAP-related domain
    • Fahsold R, Hoffmeyer S, Mischung C, et al. (2000) Minor lesion mutational spectrum of the entire NF1 gene does not explain its high mutability but points to a functional domain upstream of the GAP-related domain. Am J Hum Genet 66: 790–818.
    • (2000) Am J Hum Genet , vol.66 , pp. 790-818
    • Fahsold, R1    Hoffmeyer, S2    Mischung, C3
  • 15
    • 84858291153 scopus 로고    scopus 로고
    • Assessing the enrichment performance in targeted resequencing experiments
    • Frommolt P, Abdallah AT, Altmüller J, et al. (2012) Assessing the enrichment performance in targeted resequencing experiments. Hum Mutat 33:635–641.
    • (2012) Hum Mutat , vol.33 , pp. 635-641
    • Frommolt, P1    Abdallah, AT2    Altmüller, J3
  • 16
    • 0029880743 scopus 로고    scopus 로고
    • Scanning the first part of the neurofibromatosis type 1 gene by RNA-SSCP: identification of three novel mutations and of two new polymorphisms
    • Gasparini P, D’Agruma L, Pio de Cillis G, et al. (1996) Scanning the first part of the neurofibromatosis type 1 gene by RNA-SSCP: identification of three novel mutations and of two new polymorphisms. Hum Genet 97:492–495.
    • (1996) Hum Genet , vol.97 , pp. 492-495
    • Gasparini, P1    D’Agruma, L2    Pio de Cillis, G3
  • 17
    • 0035177704 scopus 로고    scopus 로고
    • Evaluation of denaturing high performance liquid chromatography (DHPLC) for the mutational analysis of the neurofibromatosis type 1 (NF1) gene
    • Han SS, Cooper DN, Upadhyaya MN (2001) Evaluation of denaturing high performance liquid chromatography (DHPLC) for the mutational analysis of the neurofibromatosis type 1 (NF1) gene. Hum Genet 109:487–497.
    • (2001) Hum Genet , vol.109 , pp. 487-497
    • Han, SS1    Cooper, DN2    Upadhyaya, MN3
  • 18
    • 73949161338 scopus 로고    scopus 로고
    • Diagnosis of Russell-Silver syndrome by the combined bisulfite restriction analysis—denaturing high-performance liquid chromatography assay
    • Hattori M, Torii C, Yagihashi T, et al. (2009) Diagnosis of Russell-Silver syndrome by the combined bisulfite restriction analysis—denaturing high-performance liquid chromatography assay. Genet Test Mol Biomarkers 13:623–630.
    • (2009) Genet Test Mol Biomarkers , vol.13 , pp. 623-630
    • Hattori, M1    Torii, C2    Yagihashi, T3
  • 19
    • 85185926844 scopus 로고    scopus 로고
    • (accessed March 18 2014)
    • Japanese Genetic Variation Consortium (2013) Human genetic variation browser. Available at www.genome.med.kyotou.ac.jp/SnpDB (accessed March 18 2014).
    • (2013) Human genetic variation browser
  • 21
    • 26244438720 scopus 로고    scopus 로고
    • DHPLC in clinical molecular diagnostic services
    • Kosaki K, Udaka T, Okuyama T (2005) DHPLC in clinical molecular diagnostic services. Mol Genet Metab 86:117–123.
    • (2005) Mol Genet Metab , vol.86 , pp. 117-123
    • Kosaki, K1    Udaka, T2    Okuyama, T3
  • 22
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar P, Henikoff S, Ng PC (2009) Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4:1073–1081.
    • (2009) Nat Protoc , vol.4 , pp. 1073-1081
    • Kumar, P1    Henikoff, S2    Ng, PC3
  • 23
    • 33750104517 scopus 로고    scopus 로고
    • Identification of forty-five novel and twenty-three known NF1 mutations in Chinese patients with neurofibromatosis type 1
    • Lee MJ, Su YN, You HL, et al. (2006) Identification of forty-five novel and twenty-three known NF1 mutations in Chinese patients with neurofibromatosis type 1. Hum Mutat 27:832.
    • (2006) Hum Mutat , vol.27 , pp. 832
    • Lee, MJ1    Su, YN2    You, HL3
  • 24
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler Transform
    • Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics 25:1754–1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H1    Durbin, R2
  • 25
    • 0026505197 scopus 로고
    • Somatic mutations in the neurofibromatosis 1 gene in human tumors
    • Li Y, Bollag G, Clark R, et al. (1992) Somatic mutations in the neurofibromatosis 1 gene in human tumors. Cell 69:275–281.
    • (1992) Cell , vol.69 , pp. 275-281
    • Li, Y1    Bollag, G2    Clark, R3
  • 26
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, Hanna M, Banks E, et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20: 1297–1303.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A1    Hanna, M2    Banks, E3
  • 27
    • 0034081412 scopus 로고    scopus 로고
    • Exhaustive mutation analysis of the NF1 gene allows identification of 95% of mutations and reveals a high frequency of unusual splicing defects
    • Messiaen LM, Callens T, Mortier G, et al. (2000) Exhaustive mutation analysis of the NF1 gene allows identification of 95% of mutations and reveals a high frequency of unusual splicing defects. Hum Mutat 15:541–555.
    • (2000) Hum Mutat , vol.15 , pp. 541-555
    • Messiaen, LM1    Callens, T2    Mortier, G3
  • 28
    • 84893024132 scopus 로고    scopus 로고
    • Thirty-nine novel neurofibromatosis 1 (NF1) gene mutations identified in Slovak patients
    • Nemethova M, Bolcekova A, Ilencikova D, et al. (2013) Thirty-nine novel neurofibromatosis 1 (NF1) gene mutations identified in Slovak patients. Ann Hum Genet 77:364–379.
    • (2013) Ann Hum Genet , vol.77 , pp. 364-379
    • Nemethova, M1    Bolcekova, A2    Ilencikova, D3
  • 29
    • 0001538063 scopus 로고
    • National Institutes of Health Consensus Development Conference
    • Neurofibromatosis Conference Statement (1988) National Institutes of Health Consensus Development Conference. Arch Neurol 45:575–578.
    • (1988) Arch Neurol , vol.45 , pp. 575-578
  • 30
    • 0029560551 scopus 로고
    • Identification of neurofibromatosis 1 (NF1) homologous loci by direct sequencing, fluorescence in situ hybridization, and PCR amplification of somatic cell hybrids
    • Purandare SM, Huntsman Breidenbach H, et al. (1995) Identification of neurofibromatosis 1 (NF1) homologous loci by direct sequencing, fluorescence in situ hybridization, and PCR amplification of somatic cell hybrids. Genomics 30:476–485.
    • (1995) Genomics , vol.30 , pp. 476-485
    • Purandare, SM1    Huntsman Breidenbach, H2
  • 31
    • 0028359659 scopus 로고
    • Characterisation of inherited and sporadic mutations in neurofibromatosis type-1
    • Purandare SM, Lanyon WG, Connor JM (1994) Characterisation of inherited and sporadic mutations in neurofibromatosis type-1. Hum Mol Genet 3:1109–1115.
    • (1994) Hum Mol Genet , vol.3 , pp. 1109-1115
    • Purandare, SM1    Lanyon, WG2    Connor, JM3
  • 32
    • 42149139456 scopus 로고    scopus 로고
    • ACMG recommendations for standards for interpretation and reporting of sequence variations: revisions 2007
    • Richards CS, Bale S, Bellissimo DB, et al. (2008) ACMG recommendations for standards for interpretation and reporting of sequence variations: revisions 2007. Genet Med 10: 294–300.
    • (2008) Genet Med , vol.10 , pp. 294-300
    • Richards, CS1    Bale, S2    Bellissimo, DB3
  • 33
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the www for general users and for biologist programmers
    • Rozen S, Skaletsky H (2000) Primer3 on the www for general users and for biologist programmers. Methods Mol Biol 132:365–386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S1    Skaletsky, H2
  • 34
    • 84885421184 scopus 로고    scopus 로고
    • NF1 molecular characterization and neurofibromatosis type I genotype-phenotype correlation: the French experience
    • Sabbagh A, Pasmant E, Imbard A, et al. (2013) NF1 molecular characterization and neurofibromatosis type I genotype-phenotype correlation: the French experience. Hum Mutat 34: 1510–1518.
    • (2013) Hum Mutat , vol.34 , pp. 1510-1518
    • Sabbagh, A1    Pasmant, E2    Imbard, A3
  • 35
    • 35349021526 scopus 로고    scopus 로고
    • Screening for Alagille syndrome mutations in the JAG1 and NOTCH2 genes using denaturing high-performance liquid chromatography
    • Samejima H, Torii C, Kosaki R, et al. (2007) Screening for Alagille syndrome mutations in the JAG1 and NOTCH2 genes using denaturing high-performance liquid chromatography. Genet Test Mol Biomarkers 11:216–227.
    • (2007) Genet Test Mol Biomarkers , vol.11 , pp. 216-227
    • Samejima, H1    Torii, C2    Kosaki, R3
  • 36
    • 77955151784 scopus 로고    scopus 로고
    • MutationTaster evaluates disease-causing potential of sequence alterations
    • Schwarz JM, Rödelsperger C, Schuelke M, et al. (2010) MutationTaster evaluates disease-causing potential of sequence alterations. Nat Methods 7:575–576.
    • (2010) Nat Methods , vol.7 , pp. 575-576
    • Schwarz, JM1    Rödelsperger, C2    Schuelke, M3
  • 37
    • 33745772571 scopus 로고    scopus 로고
    • New methods for detecting lineage-specific selection. Proceedings of the 10th International Conference on Research in Computational
    • Siepel A, Pollard KS, Haussler D (2009) New methods for detecting lineage-specific selection. Proceedings of the 10th International Conference on Research in Computational. Mol Biol 3909:190–205.
    • (2009) Mol Biol , vol.3909 , pp. 190-205
    • Siepel, A1    Pollard, KS2    Haussler, D3
  • 38
    • 84888042274 scopus 로고    scopus 로고
    • Severe congenital lipodystrophy and a progeroid appearance: mutation in the penultimate exon of FBN1 causing a recognizable phenotype
    • Takenouchi T, Hida M, Sakamoto Y, et al. (2013a) Severe congenital lipodystrophy and a progeroid appearance: mutation in the penultimate exon of FBN1 causing a recognizable phenotype. Am J Med Genet A 161A:3057–3062.
    • (2013) Am J Med Genet A , vol.161A , pp. 3057-3062
    • Takenouchi, T1    Hida, M2    Sakamoto, Y3
  • 39
    • 84901004586 scopus 로고    scopus 로고
    • SOX9 dimerization domain mutation mimicking type 2 collagen disorder phenotype
    • Takenouchi T, Matsuzaki Y, Torii C, et al. (2014) SOX9 dimerization domain mutation mimicking type 2 collagen disorder phenotype. Eur J Med Genet 57:298–301.
    • (2014) Eur J Med Genet , vol.57 , pp. 298-301
    • Takenouchi, T1    Matsuzaki, Y2    Torii, C3
  • 40
    • 84892895920 scopus 로고    scopus 로고
    • Multiple Café au Lait spots in familial patients with MAP2K2 mutation
    • Takenouchi T, Shimizu A, Torii C, et al. (2013b) Multiple Café au Lait spots in familial patients with MAP2K2 mutation. Am J Med Genet A 164A:392–396.
    • (2013) Am J Med Genet A , vol.164A , pp. 392-396
    • Takenouchi, T1    Shimizu, A2    Torii, C3
  • 41
    • 84857187982 scopus 로고    scopus 로고
    • VarSifter: visualizing and analyzing exome-scale sequence variation data on a desktop computer
    • Teer JK, Green ED, Mullikin JC, et al. (2012) VarSifter: visualizing and analyzing exome-scale sequence variation data on a desktop computer. Bioinformatics 28:599–600.
    • (2012) Bioinformatics , vol.28 , pp. 599-600
    • Teer, JK1    Green, ED2    Mullikin, JC3
  • 42
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
    • Thorvaldsdóttir H, Robinson JT, Mesirov JP (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14:178–192.
    • (2013) Brief Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdóttir, H1    Robinson, JT2    Mesirov, JP3
  • 43
    • 35348937669 scopus 로고    scopus 로고
    • Multiplex PCR/liquid chromatography assay for screening of subtelomeric rearrangements
    • Udaka T, Imoto I, Aizu Y, et al. (2007) Multiplex PCR/liquid chromatography assay for screening of subtelomeric rearrangements. Genet Test Mol Biomarkers 11:241–248.
    • (2007) Genet Test Mol Biomarkers , vol.11 , pp. 241-248
    • Udaka, T1    Imoto, I2    Aizu, Y3
  • 44
    • 33846706462 scopus 로고    scopus 로고
    • Screening for partial deletions in the CREBBP gene in Rubinstein-Taybi syndrome patients using multiplex PCR/liquid chromatography
    • Udaka T, Kurosawa K, Izumi K, et al. (2006) Screening for partial deletions in the CREBBP gene in Rubinstein-Taybi syndrome patients using multiplex PCR/liquid chromatography. Genet Test Mol Biomarkers 10:265–271.
    • (2006) Genet Test Mol Biomarkers , vol.10 , pp. 265-271
    • Udaka, T1    Kurosawa, K2    Izumi, K3
  • 45
    • 21044449130 scopus 로고    scopus 로고
    • Comprehensive screening of the thiopurine methyltransferase polymorphisms by denaturing high-performance liquid chromatography
    • Udaka T, Torii C, Takahashi D, et al. (2005) Comprehensive screening of the thiopurine methyltransferase polymorphisms by denaturing high-performance liquid chromatography. Genet Test Mol Biomarkers 9:85–92.
    • (2005) Genet Test Mol Biomarkers , vol.9 , pp. 85-92
    • Udaka, T1    Torii, C2    Takahashi, D3
  • 46
    • 84870201398 scopus 로고    scopus 로고
    • NF1 gene structure and NF1 genotype/ phenotype correlations
    • Kaufmann D (ed) Karger, Basel
    • Upaddhyaya M (2008) NF1 gene structure and NF1 genotype/ phenotype correlations. In: Kaufmann D (ed) Neurofibromatoses. Karger, Basel, pp 46–62.
    • (2008) Neurofibromatoses , pp. 46-62
    • Upaddhyaya, M1
  • 47
    • 79952257003 scopus 로고    scopus 로고
    • A highly sensitive genetic protocol to detect NF1 mutations
    • Valero MC, Martín Y, Hernández-Imaz E, et al. (2011) A highly sensitive genetic protocol to detect NF1 mutations. J Mol Diagn 13:113–122.
    • (2011) J Mol Diagn , vol.13 , pp. 113-122
    • Valero, MC1    Martín, Y2    Hernández-Imaz, E3
  • 48
    • 84881179551 scopus 로고    scopus 로고
    • Next-generation sequencing in genetic hearing loss
    • Yan D, Tekin M, Blanton SH, et al. (2013) Next-generation sequencing in genetic hearing loss. Genet Test Mol Biomarkers 17:581–587.
    • (2013) Genet Test Mol Biomarkers , vol.17 , pp. 581-587
    • Yan, D1    Tekin, M2    Blanton, SH3


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