메뉴 건너뛰기




Volumn 24, Issue 13, 2015, Pages 3455-3466

Phylogeography and support vector machine classification of colour variation in panther chameleons

Author keywords

colour patterns; Furcifer pardalis; panther chameleon; phylogeography; speciation; supervised learning; support vector machine classification

Indexed keywords

CHAMAELEONIDAE; FURCIFER PARDALIS; REPTILIA; SERPENTES; SQUAMATA;

EID: 84933279633     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.13241     Document Type: Article
Times cited : (18)

References (59)
  • 4
    • 33751167085 scopus 로고    scopus 로고
    • Phylogeny and biogeography of a cosmopolitan frog radiation: Late cretaceous diversification resulted in continent-scale endemism in the family ranidae
    • Bossuyt F, Brown RM, Hillis DM, Cannatella DC, Milinkovitch MC, (2006) Phylogeny and biogeography of a cosmopolitan frog radiation: late cretaceous diversification resulted in continent-scale endemism in the family ranidae. Systematic Biology, 55, 579-594.
    • (2006) Systematic Biology , vol.55 , pp. 579-594
    • Bossuyt, F.1    Brown, R.M.2    Hillis, D.M.3    Cannatella, D.C.4    Milinkovitch, M.C.5
  • 5
    • 81355147580 scopus 로고    scopus 로고
    • A steep cline in ladybird melanism has decayed over 25 years: A genetic response to climate change?
    • Brakefield PM, de Jong PW, (2011) A steep cline in ladybird melanism has decayed over 25 years: a genetic response to climate change? Heredity (Edinb), 107, 574-578.
    • (2011) Heredity (Edinb) , vol.107 , pp. 574-578
    • Brakefield, P.M.1    De Jong, P.W.2
  • 6
    • 22844440900 scopus 로고    scopus 로고
    • Evaluating intraspecific "network" construction methods using simulated sequence data: Do existing algorithms outperform the global maximum parsimony approach?
    • Cassens I, Mardulyn P, Milinkovitch MC, (2005) Evaluating intraspecific "network" construction methods using simulated sequence data: do existing algorithms outperform the global maximum parsimony approach? Systematic Biology, 54, 363-372.
    • (2005) Systematic Biology , vol.54 , pp. 363-372
    • Cassens, I.1    Mardulyn, P.2    Milinkovitch, M.C.3
  • 8
    • 0000697783 scopus 로고
    • Reptilian coloration and behavior
    • (eds, Gans C, Crews DE,), Chicago University Press, Chicago
    • Cooper W, Greenberg N, (1992) Reptilian coloration and behavior. In: Biology of the Reptilia. (eds, Gans C, Crews DE,), pp. 298-422. Chicago University Press, Chicago.
    • (1992) Biology of the Reptilia , pp. 298-422
    • Cooper, W.1    Greenberg, N.2
  • 9
    • 34249753618 scopus 로고
    • Support-Vector Networks
    • Cortes C, Vapnik V, (1995) Support-Vector Networks. Machine Learning, 20, 273-297.
    • (1995) Machine Learning , vol.20 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 10
    • 77953040058 scopus 로고    scopus 로고
    • Carotenoid-based coloration, oxidative stress and corticosterone in common lizards
    • Cote J, Meylan S, Clobert J, Voituron Y, (2010) Carotenoid-based coloration, oxidative stress and corticosterone in common lizards. Journal of Experimental Biology, 213, 2116-2124.
    • (2010) Journal of Experimental Biology , vol.213 , pp. 2116-2124
    • Cote, J.1    Meylan, S.2    Clobert, J.3    Voituron, Y.4
  • 11
    • 49049098980 scopus 로고    scopus 로고
    • Pleiotropy in the melanocortin system, coloration and behavioural syndromes
    • Ducrest AL, Keller L, Roulin A, (2008) Pleiotropy in the melanocortin system, coloration and behavioural syndromes. Trends in Ecology & Evolution, 23, 502-510.
    • (2008) Trends in Ecology & Evolution , vol.23 , pp. 502-510
    • Ducrest, A.L.1    Keller, L.2    Roulin, A.3
  • 12
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HE, (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.2
  • 13
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM, (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 15
    • 80052210038 scopus 로고    scopus 로고
    • High sensitivity to short wavelengths in a lizard and implications for understanding the evolution of visual systems in lizards
    • Fleishman LJ, Loew ER, Whiting MJ, (2011) High sensitivity to short wavelengths in a lizard and implications for understanding the evolution of visual systems in lizards. Proceedings. Biological Sciences, 278, 2891-2899.
    • (2011) Proceedings. Biological Sciences , vol.278 , pp. 2891-2899
    • Fleishman, L.J.1    Loew, E.R.2    Whiting, M.J.3
  • 17
    • 0035155245 scopus 로고    scopus 로고
    • The biodiversity of Madagascar: One of the world's hottest hotspots on its way out
    • Ganzhorn JU, Lowry PP, Schatz GE, Sommer S, (2001) The biodiversity of Madagascar: one of the world's hottest hotspots on its way out. Oryx, 35, 346-348.
    • (2001) Oryx , vol.35 , pp. 346-348
    • Ganzhorn, J.U.1    Lowry, P.P.2    Schatz, G.E.3    Sommer, S.4
  • 18
    • 33846271469 scopus 로고    scopus 로고
    • Linking color polymorphism maintenance and speciation
    • Gray SM, McKinnon JS, (2007) Linking color polymorphism maintenance and speciation. Trends in Ecology & Evolution, 22, 71-79.
    • (2007) Trends in Ecology & Evolution , vol.22 , pp. 71-79
    • Gray, S.M.1    McKinnon, J.S.2
  • 19
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium, 41, 95-98.
    • (1999) Nucleic Acids Symposium , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 20
    • 0035576285 scopus 로고    scopus 로고
    • Prospects for nuclear gene phylogeography
    • Hare MP, (2001) Prospects for nuclear gene phylogeography. Trends in Ecology & Evolution, 16, 700-706.
    • (2001) Trends in Ecology & Evolution , vol.16 , pp. 700-706
    • Hare, M.P.1
  • 22
    • 84879943971 scopus 로고    scopus 로고
    • Gene expression analysis of zebrafish melanocytes, iridophores, and retinal pigmented epithelium reveals indicators of biological function and developmental origin
    • Higdon CW, Mitra RD, Johnson SL, (2013) Gene expression analysis of zebrafish melanocytes, iridophores, and retinal pigmented epithelium reveals indicators of biological function and developmental origin. PLoS One, 8, e67801.
    • (2013) PLoS One , vol.8
    • Higdon, C.W.1    Mitra, R.D.2    Johnson, S.L.3
  • 23
    • 33747873404 scopus 로고    scopus 로고
    • Genetics, development and evolution of adaptive pigmentation in vertebrates
    • Hoekstra HE, (2006) Genetics, development and evolution of adaptive pigmentation in vertebrates. Heredity, 97, 222-234.
    • (2006) Heredity , vol.97 , pp. 222-234
    • Hoekstra, H.E.1
  • 25
    • 84907132997 scopus 로고
    • Carotenoid and pterin pigment localization in fish chromatophores
    • Junqueira LC, Lima MH, Farias EC, (1978) Carotenoid and pterin pigment localization in fish chromatophores. Stain Technology, 53, 91-94.
    • (1978) Stain Technology , vol.53 , pp. 91-94
    • Junqueira, L.C.1    Lima, M.H.2    Farias, E.C.3
  • 26
    • 33751232662 scopus 로고    scopus 로고
    • Ultrastructure of the dermal chromatophores in a lizard (Scincidae: Plestiodon latiscutatus) with conspicuous body and tail coloration
    • Kuriyama T, Miyaji K, Sugimoto M, Hasegawa M, (2006) Ultrastructure of the dermal chromatophores in a lizard (Scincidae: Plestiodon latiscutatus) with conspicuous body and tail coloration. Zoological Science, 23, 793-799.
    • (2006) Zoological Science , vol.23 , pp. 793-799
    • Kuriyama, T.1    Miyaji, K.2    Sugimoto, M.3    Hasegawa, M.4
  • 28
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 29
    • 84891925843 scopus 로고    scopus 로고
    • Chameleons communicate with complex colour changes during contests: Different body regions convey different information
    • Ligon RA, McGraw KJ, (2013) Chameleons communicate with complex colour changes during contests: different body regions convey different information. Biology Letters, 9, 20130892.
    • (2013) Biology Letters , vol.9
    • Ligon, R.A.1    McGraw, K.J.2
  • 30
    • 77955406463 scopus 로고    scopus 로고
    • Sympatric colour polymorphisms associated with nonrandom gene flow in cichlid fish of Lake Victoria
    • Magalhaes IS, Mwaiko S, Seehausen O, (2010) Sympatric colour polymorphisms associated with nonrandom gene flow in cichlid fish of Lake Victoria. Molecular Ecology, 19, 3285-3300.
    • (2010) Molecular Ecology , vol.19 , pp. 3285-3300
    • Magalhaes, I.S.1    Mwaiko, S.2    Seehausen, O.3
  • 31
    • 78649611779 scopus 로고    scopus 로고
    • Colour polymorphism and correlated characters: Genetic mechanisms and evolution
    • McKinnon JS, Pierotti ME, (2010) Colour polymorphism and correlated characters: genetic mechanisms and evolution. Molecular Ecology, 19, 5101-5125.
    • (2010) Molecular Ecology , vol.19 , pp. 5101-5125
    • McKinnon, J.S.1    Pierotti, M.E.2
  • 32
    • 0005181543 scopus 로고    scopus 로고
    • Applications of molecular data in cetacean taxonomy and population genetics with special emphasis on defining species boundaries
    • P. H. Evans and J. Raga, Springer US
    • Milinkovitch M, Leduc R, Tiedemann R, Dizon A, (2001) Applications of molecular data in cetacean taxonomy and population genetics with special emphasis on defining species boundaries. Marine Mammals. P. H. Evans and J. Raga, Springer US: 325-359.
    • (2001) Marine Mammals , pp. 325-359
    • Milinkovitch, M.1    Leduc, R.2    Tiedemann, R.3    Dizon, A.4
  • 34
    • 84871422579 scopus 로고    scopus 로고
    • Rapid color change in fish and amphibians - Function, regulation, and emerging applications
    • Nilsson Skold H, Aspengren S, Wallin M, (2013) Rapid color change in fish and amphibians-function, regulation, and emerging applications. Pigment Cell Melanoma Research, 26, 29-38.
    • (2013) Pigment Cell Melanoma Research , vol.26 , pp. 29-38
    • Nilsson Skold, H.1    Aspengren, S.2    Wallin, M.3
  • 35
    • 84891842622 scopus 로고    scopus 로고
    • Upstream analyses create problems with DNA-based species delimitation
    • Olave M, Sola E, Knowles LL, (2014) Upstream analyses create problems with DNA-based species delimitation. Systematic Biology, 63, 263-271.
    • (2014) Systematic Biology , vol.63 , pp. 263-271
    • Olave, M.1    Sola, E.2    Knowles, L.L.3
  • 37
    • 0029966118 scopus 로고    scopus 로고
    • Carotenoids. 4. Absorption, metabolism, and transport of carotenoids
    • Parker RS, (1996) Carotenoids. 4. Absorption, metabolism, and transport of carotenoids. FASEB Journal, 10, 542-551.
    • (1996) FASEB Journal , vol.10 , pp. 542-551
    • Parker, R.S.1
  • 39
    • 84885014344 scopus 로고    scopus 로고
    • Precise colocalization of interacting structural and pigmentary elements generates extensive color pattern variation in Phelsuma lizards
    • Saenko SV, Teyssier J, van der Marel D, Milinkovitch MC, (2013) Precise colocalization of interacting structural and pigmentary elements generates extensive color pattern variation in Phelsuma lizards. BMC Biology, 11, 105.
    • (2013) BMC Biology , vol.11 , pp. 105
    • Saenko, S.V.1    Teyssier, J.2    Van Der Marel, D.3    Milinkovitch, M.C.4
  • 40
    • 81255214938 scopus 로고    scopus 로고
    • The influence of stochastic and selective forces in the population divergence of female colour polymorphism in damselflies of the genus Ischnura
    • Sanchez-Guillen RA, Hansson B, Wellenreuther M, Svensson EI, Cordero-Rivera A, (2011) The influence of stochastic and selective forces in the population divergence of female colour polymorphism in damselflies of the genus Ischnura. Heredity (Edinb), 107, 513-522.
    • (2011) Heredity (Edinb) , vol.107 , pp. 513-522
    • Sanchez-Guillen, R.A.1    Hansson, B.2    Wellenreuther, M.3    Svensson, E.I.4    Cordero-Rivera, A.5
  • 41
    • 0000825481 scopus 로고
    • A statistical method for evaluating systematic relationships
    • Sokal R, Michener C, (1958) A statistical method for evaluating systematic relationships. University of Kansas Science Bulletin, 38, 1409-1438.
    • (1958) University of Kansas Science Bulletin , vol.38 , pp. 1409-1438
    • Sokal, R.1    Michener, C.2
  • 43
    • 34548694067 scopus 로고    scopus 로고
    • Adaptive variation in beach mice produced by two interacting pigmentation genes
    • Steiner CC, Weber JN, Hoekstra HE, (2007) Adaptive variation in beach mice produced by two interacting pigmentation genes. PLoS Biology, 5, e219.
    • (2007) PLoS Biology , vol.5 , pp. e219
    • Steiner, C.C.1    Weber, J.N.2    Hoekstra, H.E.3
  • 44
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith NJ, Donnelly P, (2001) A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978-989.
    • (2001) American Journal of Human Genetics , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 45
    • 38949095386 scopus 로고    scopus 로고
    • Selection for social signalling drives the evolution of chameleon colour change
    • Stuart-Fox D, Moussalli A, (2008) Selection for social signalling drives the evolution of chameleon colour change. PLoS Biology, 6, e25.
    • (2008) PLoS Biology , vol.6 , pp. e25
    • Stuart-Fox, D.1    Moussalli, A.2
  • 47
    • 0014721780 scopus 로고
    • Chromatophores and color change in the lizard, Anolis carolinensis
    • Taylor JD, Hadley ME, (1970) Chromatophores and color change in the lizard, Anolis carolinensis. Z Zellforsch Mikrosk Anat, 104, 282-294.
    • (1970) Z Zellforsch Mikrosk Anat , vol.104 , pp. 282-294
    • Taylor, J.D.1    Hadley, M.E.2
  • 50
    • 84878242762 scopus 로고    scopus 로고
    • Large-scale phylogeny of chameleons suggests African origins and Eocene diversification
    • Tolley KA, Townsend TM, Vences M, (2013) Large-scale phylogeny of chameleons suggests African origins and Eocene diversification. Proceedings. Biological Sciences, 280, 20130184.
    • (2013) Proceedings. Biological Sciences , vol.280
    • Tolley, K.A.1    Townsend, T.M.2    Vences, M.3
  • 51
    • 80052752932 scopus 로고    scopus 로고
    • Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation
    • Townsend TM, Mulcahy DG, Noonan BP, et al,. (2011) Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation. Molecular Phylogenetics and Evolution, 61, 363-380.
    • (2011) Molecular Phylogenetics and Evolution , vol.61 , pp. 363-380
    • Townsend, T.M.1    Mulcahy, D.G.2    Noonan, B.P.3
  • 53
    • 0021566877 scopus 로고
    • Estimating F-Statistics for the analysis of population-structure
    • Weir BS, Cockerham CC, (1984) Estimating F-Statistics for the analysis of population-structure. Evolution, 38, 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 54
    • 83555179138 scopus 로고    scopus 로고
    • Pteridine, not carotenoid, pigments underlie the female-specific orange ornament of striped plateau lizards (Sceloporus virgatus)
    • Weiss SL, Foerster K, Hudon J, (2012) Pteridine, not carotenoid, pigments underlie the female-specific orange ornament of striped plateau lizards (Sceloporus virgatus). Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology, 161, 117-123.
    • (2012) Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology , vol.161 , pp. 117-123
    • Weiss, S.L.1    Foerster, K.2    Hudon, J.3
  • 56
    • 44849122679 scopus 로고    scopus 로고
    • A comparison of phylogenetic network methods using computer simulation
    • Woolley SM, Posada D, Crandall KA, (2008) A comparison of phylogenetic network methods using computer simulation. PLoS One, 3, e1913.
    • (2008) PLoS One , vol.3
    • Woolley, S.M.1    Posada, D.2    Crandall, K.A.3
  • 58
    • 84921830038 scopus 로고    scopus 로고
    • Bayesian species delimitation can be robust to guide-tree inference errors
    • Zhang C, Rannala B, Yang Z, (2014) Bayesian species delimitation can be robust to guide-tree inference errors. Systematic Biology, 63, 993-1004.
    • (2014) Systematic Biology , vol.63 , pp. 993-1004
    • Zhang, C.1    Rannala, B.2    Yang, Z.3
  • 59
    • 0038579501 scopus 로고    scopus 로고
    • The pteridine pathway in zebrafish: Regulation and specification during the determination of neural crest cell-fate
    • Ziegler I, (2003) The pteridine pathway in zebrafish: regulation and specification during the determination of neural crest cell-fate. Pigment Cell Research, 16, 172-182.
    • (2003) Pigment Cell Research , vol.16 , pp. 172-182
    • Ziegler, I.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.