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Volumn 9789400748996, Issue , 2012, Pages 1-19

Revolutionary struggle for existence: Introduction to four intriguing puzzles in virus research

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EID: 84932140022     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-94-007-4899-6_1     Document Type: Chapter
Times cited : (5)

References (73)
  • 1
    • 0032246556 scopus 로고    scopus 로고
    • Tailed bacteriophages: The order caudovirales
    • Ackermann HW (1998) Tailed bacteriophages: The order caudovirales. Adv Virus Res 51:135-201
    • (1998) Adv Virus Res , vol.51 , pp. 135-201
    • Ackermann, H.W.1
  • 2
    • 0035007418 scopus 로고    scopus 로고
    • Frequency of morphological phage descriptions in the year 2000 brief review
    • Ackermann HW (2001) Frequency of morphological phage descriptions in the year 2000 brief review. Arch Virol 146:843-857
    • (2001) Arch Virol , vol.146 , pp. 843-857
    • Ackermann, H.W.1
  • 5
    • 0033578669 scopus 로고    scopus 로고
    • Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures
    • Benson SD, Bamford JK, Bamford DH, Burnett RM (1999) Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures. Cell 98:825-833
    • (1999) Cell , vol.98 , pp. 825-833
    • Benson, S.D.1    Bamford, J.K.2    Bamford, D.H.3    Burnett, R.M.4
  • 6
    • 77956836752 scopus 로고    scopus 로고
    • Inhibition of superinfection and the evolution of viral latency
    • Berngruber TW, Weissing FJ, Gandon S (2010) Inhibition of superinfection and the evolution of viral latency. J Virol 84:10200-10208
    • (2010) J Virol , vol.84 , pp. 10200-10208
    • Berngruber, T.W.1    Weissing, F.J.2    Gandon, S.3
  • 8
    • 67651064675 scopus 로고    scopus 로고
    • The not so universal tree of life or the place of viruses in the living world
    • Brüssow H (2009) The not so universal tree of life or the place of viruses in the living world. Philos Trans R Soc Lond B Biol Sci 364:2263-2274
    • (2009) Philos Trans R Soc Lond B Biol Sci , vol.364 , pp. 2263-2274
    • Brüssow, H.1
  • 9
    • 0037825641 scopus 로고    scopus 로고
    • Prophages and bacterial genomics: What have we learned so far?
    • Casjens S (2003) Prophages and bacterial genomics: what have we learned so far? Mol Microbiol 49:277-300
    • (2003) Mol Microbiol , vol.49 , pp. 277-300
    • Casjens, S.1
  • 11
    • 67649695570 scopus 로고    scopus 로고
    • A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes
    • Cortez D, Forterre P, Gribaldo S (2009) A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes. Genome Biol 10:R65
    • (2009) Genome Biol , vol.10 , pp. R65
    • Cortez, D.1    Forterre, P.2    Gribaldo, S.3
  • 12
    • 0037424668 scopus 로고    scopus 로고
    • The universal ancestor was a thermophile or a hyperthermophile: Tests and further evidence
    • Di Giulio M (2003) The universal ancestor was a thermophile or a hyperthermophile: tests and further evidence. J Theor Biol 221:425-436
    • (2003) J Theor Biol , vol.221 , pp. 425-436
    • Di Giulio, M.1
  • 13
    • 0034027594 scopus 로고    scopus 로고
    • The nature of the universal ancestor and the evolution of the proteome
    • Doolittle WF (2000) The nature of the universal ancestor and the evolution of the proteome. Curr Opin Struct Biol 10:355-358
    • (2000) Curr Opin Struct Biol , vol.10 , pp. 355-358
    • Doolittle, W.F.1
  • 14
    • 40849097775 scopus 로고    scopus 로고
    • Rates of evolutionary change in viruses: Patterns and determinants
    • Duffy S, Shackelton LA, Holmes EC (2008) Rates of evolutionary change in viruses: patterns and determinants. Nat Rev Genet 9:267-276
    • (2008) Nat Rev Genet , vol.9 , pp. 267-276
    • Duffy, S.1    Shackelton, L.A.2    Holmes, E.C.3
  • 15
    • 77953702435 scopus 로고    scopus 로고
    • Giant viruses: Conflicts in revisiting the virus concept
    • Forterre P (2010) Giant viruses: conflicts in revisiting the virus concept. Intervirology 53:362-378
    • (2010) Intervirology , vol.53 , pp. 362-378
    • Forterre, P.1
  • 16
    • 79551492021 scopus 로고    scopus 로고
    • Manipulation of cellular syntheses and the nature of viruses: The virocell concept
    • Forterre P (2011) Manipulation of cellular syntheses and the nature of viruses: The virocell concept. C R Chim 14:392-399
    • (2011) C R Chim , vol.14 , pp. 392-399
    • Forterre, P.1
  • 17
    • 70350460249 scopus 로고    scopus 로고
    • The great billion-year war between ribosome-and capsidencoding organisms (cells and viruses) as the major source of evolutionary novelties
    • Forterre P, Prangishvili D (2009a) The great billion-year war between ribosome-and capsidencoding organisms (cells and viruses) as the major source of evolutionary novelties. Ann N Y Acad Sci 1178:65-77
    • (2009) Ann N y Acad Sci , vol.1178 , pp. 65-77
    • Forterre, P.1    Prangishvili, D.2
  • 19
    • 84856209755 scopus 로고    scopus 로고
    • Viral evolution in deep time: Lentiviruses and mammals
    • Gifford RJ (2012) Viral evolution in deep time: lentiviruses and mammals. Trends Genet 28:89-100
    • (2012) Trends Genet , vol.28 , pp. 89-100
    • Gifford, R.J.1
  • 21
    • 0025301417 scopus 로고
    • Sexual reproduction as an adaptation to resist parasites
    • Hamilton WD, Axelrod R, Tanese R (1990) Sexual reproduction as an adaptation to resist parasites. Proc Natl Acad Sci USA 87:3566-3573
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 3566-3573
    • Hamilton, W.D.1    Axelrod, R.2    Tanese, R.3
  • 22
    • 80054890343 scopus 로고    scopus 로고
    • The evolution of endogenous viral elements
    • Holmes EC (2011) The evolution of endogenous viral elements. Cell Host Microbe 10:368-377
    • (2011) Cell Host Microbe , vol.10 , pp. 368-377
    • Holmes, E.C.1
  • 23
    • 84860825761 scopus 로고    scopus 로고
    • Closely related archaeal haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions
    • Jaakkola ST, Penttinen RK, Vilén ST, Jalasvuori M, Rönnholm G, Bamford JK, Bamford DH, Oksanen HM (2012) Closely related archaeal haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions. J Virol 86:4734-4742
    • (2012) J Virol , vol.86 , pp. 4734-4742
    • Jaakkola, S.T.1    Penttinen, R.K.2    Vilén, S.T.3    Jalasvuori, M.4    Rönnholm, G.5    Bamford, J.K.6    Bamford, D.H.7    Oksanen, H.M.8
  • 24
    • 39649120942 scopus 로고
    • Viruses and genes
    • Jacob F, Wollman EL (1961) Viruses and genes. Sci Am 204:93-107
    • (1961) Sci Am , vol.204 , pp. 93-107
    • Jacob, F.1    Wollman, E.L.2
  • 25
    • 84878525515 scopus 로고    scopus 로고
    • Vehicles, replicators and intercellular movement of genetic information: Evolutionary dissection of a bacterial cell
    • Jalasvuori M (2012) Vehicles, replicators and intercellular movement of genetic information: evolutionary dissection of a bacterial cell. Int J Evol Biol 2012:874153
    • (2012) Int J Evol Biol , vol.2012 , pp. 874153
    • Jalasvuori, M.1
  • 26
    • 41049087598 scopus 로고    scopus 로고
    • Structural Co-evolution of viruses and cells in the primordial world
    • Jalasvuori M, Bamford JK (2008) Structural Co-evolution of viruses and cells in the primordial world. Orig Life Evol Biosph 38:165-181
    • (2008) Orig Life Evol Biosph , vol.38 , pp. 165-181
    • Jalasvuori, M.1    Bamford, J.K.2
  • 27
    • 63049093396 scopus 로고    scopus 로고
    • Did the ancient crenarchaeal viruses from the dawn of life survive exceptionally well the eons of meteorite bombardment?
    • Jalasvuori M, Bamford JKH (2009) Did the ancient crenarchaeal viruses from the dawn of life survive exceptionally well the eons of meteorite bombardment? Astrobiology 9:131-137
    • (2009) Astrobiology , vol.9 , pp. 131-137
    • Jalasvuori, M.1    Bamford, J.K.H.2
  • 29
    • 77954026804 scopus 로고    scopus 로고
    • A unique group of virus-related, genome-integrating elements found solely in the bacterial family thermaceae and the archaeal family halobacteriaceae
    • Jalasvuori M, Pawlowski A, Bamford JK (2010) A unique group of virus-related, genome-integrating elements found solely in the bacterial family thermaceae and the archaeal family halobacteriaceae. J Bacteriol 192:3231-3234
    • (2010) J Bacteriol , vol.192 , pp. 3231-3234
    • Jalasvuori, M.1    Pawlowski, A.2    Bamford, J.K.3
  • 30
    • 58149507192 scopus 로고    scopus 로고
    • Effects of retroviruses on host genome function
    • Jern P, Coffin JM (2008) Effects of retroviruses on host genome function. Annu Rev Genet 42:709-732
    • (2008) Annu Rev Genet , vol.42 , pp. 709-732
    • Jern, P.1    Coffin, J.M.2
  • 31
    • 78649718268 scopus 로고    scopus 로고
    • Endogenous viral elements in animal genomes
    • Katzourakis A, Gifford RJ (2010) Endogenous viral elements in animal genomes. PLoS Genet 6:e1001191
    • (2010) PLoS Genet , vol.6 , pp. e1001191
    • Katzourakis, A.1    Gifford, R.J.2
  • 32
    • 24944569270 scopus 로고    scopus 로고
    • The evolutionary dynamics of endogenous retroviruses
    • Katzourakis A, Rambaut A, Pybus OG (2005) The evolutionary dynamics of endogenous retroviruses. Trends Microbiol 13:463-468
    • (2005) Trends Microbiol , vol.13 , pp. 463-468
    • Katzourakis, A.1    Rambaut, A.2    Pybus, O.G.3
  • 33
    • 34648822341 scopus 로고    scopus 로고
    • Effects of recombination rate on human endogenous retrovirusfixation and persistence
    • Katzourakis A, Pereira V, Tristem M (2007) Effects of recombination rate on human endogenous retrovirusfixation and persistence. J Virol 81:10712-10717
    • (2007) J Virol , vol.81 , pp. 10712-10717
    • Katzourakis, A.1    Pereira, V.2    Tristem, M.3
  • 35
    • 30044450170 scopus 로고    scopus 로고
    • Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses
    • Khayat R, Tang L, Larson ET, Lawrence CM, Young M, Johnson JE (2005) Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses. Proc Natl Acad Sci USA 102:18944-18949
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 18944-18949
    • Khayat, R.1    Tang, L.2    Larson, E.T.3    Lawrence, C.M.4    Young, M.5    Johnson, J.E.6
  • 36
    • 79955136138 scopus 로고    scopus 로고
    • Parasites, sex, and clonal diversity in natural snail populations
    • King KC, Jokela J, Lively CM (2011) Parasites, sex, and clonal diversity in natural snail populations. Evolution 65:1474-1481
    • (2011) Evolution , vol.65 , pp. 1474-1481
    • King, K.C.1    Jokela, J.2    Lively, C.M.3
  • 37
    • 27744591844 scopus 로고    scopus 로고
    • On the origin of genomes and cells within inorganic compartments
    • Koonin EV, Martin W (2005) On the origin of genomes and cells within inorganic compartments. Trends Genet 21:647-654
    • (2005) Trends Genet , vol.21 , pp. 647-654
    • Koonin, E.V.1    Martin, W.2
  • 39
    • 56349116764 scopus 로고    scopus 로고
    • Virus evolution: How far does the double beta-barrel viral lineage extend?
    • Krupovic M, Bamford DH (2008) Virus evolution: how far does the double beta-barrel viral lineage extend? Nat Rev Microbiol 6:941-948
    • (2008) Nat Rev Microbiol , vol.6 , pp. 941-948
    • Krupovic, M.1    Bamford, D.H.2
  • 40
    • 78649427249 scopus 로고    scopus 로고
    • Order to the viral universe
    • Krupovic M, Bamford DH (2010) Order to the viral universe. J Virol 84:12476-12479
    • (2010) J Virol , vol.84 , pp. 12476-12479
    • Krupovic, M.1    Bamford, D.H.2
  • 41
    • 84455199962 scopus 로고    scopus 로고
    • Double-stranded DNA viruses: 20 families and onlyfive different architectural principles for virion assembly
    • Krupovic M, Bamford DH (2011) Double-stranded DNA viruses: 20 families and onlyfive different architectural principles for virion assembly. Curr Opin Virol 1:118-24
    • (2011) Curr Opin Virol , vol.1 , pp. 118-124
    • Krupovic, M.1    Bamford, D.H.2
  • 42
    • 0041736065 scopus 로고    scopus 로고
    • Marine ecosystems: Bacterial photosynthesis genes in a virus
    • Mann NH, Cook A, Millard A, Bailey S, Clokie M (2003) Marine ecosystems: bacterial photosynthesis genes in a virus. Nature 424:741
    • (2003) Nature , vol.424 , pp. 741
    • Mann, N.H.1    Cook, A.2    Millard, A.3    Bailey, S.4    Clokie, M.5
  • 43
    • 34247640648 scopus 로고    scopus 로고
    • Reciprocal sequence exchange between non-retro viruses and hosts leading to the appearance of new host phenotypes
    • Maori E, Tanne E, Sela I (2007) Reciprocal sequence exchange between non-retro viruses and hosts leading to the appearance of new host phenotypes. Virology 362:342-349
    • (2007) Virology , vol.362 , pp. 342-349
    • Maori, E.1    Tanne, E.2    Sela, I.3
  • 44
    • 13644265957 scopus 로고    scopus 로고
    • On phylogenetic relationships among major lineages of the gammaherpesvirinae
    • McGeoch DJ, Gatherer D, Dolan A (2005) On phylogenetic relationships among major lineages of the gammaherpesvirinae. J Gen Virol 86:307-316
    • (2005) J Gen Virol , vol.86 , pp. 307-316
    • McGeoch, D.J.1    Gatherer, D.2    Dolan, A.3
  • 47
    • 77955312030 scopus 로고    scopus 로고
    • Exploring research frontiers in microbiology: The challenge of metagenomics in soil microbiology
    • Mocali S, Benedetti A (2010) Exploring research frontiers in microbiology: The challenge of metagenomics in soil microbiology. Res Microbiol 161:497-505
    • (2010) Res Microbiol , vol.161 , pp. 497-505
    • Mocali, S.1    Benedetti, A.2
  • 48
    • 63249112982 scopus 로고    scopus 로고
    • Ten reasons to exclude viruses from the tree of life
    • Moreira D, López-García P (2009) Ten reasons to exclude viruses from the tree of life. Nat Rev Microbiol 7:306-311
    • (2009) Nat Rev Microbiol , vol.7 , pp. 306-311
    • Moreira, D.1    López-García, P.2
  • 49
    • 0021683078 scopus 로고
    • Shiga-like toxinconverting phages from Escherichia coli strains that cause hemorrhagic colitis or infantile diarrhea
    • O'Brien AD, Newland JW, Miller SF, Holmes RK, Smith HW, Formal SB (1984) Shiga-like toxinconverting phages from Escherichia coli strains that cause hemorrhagic colitis or infantile diarrhea. Science 226:694-696
    • (1984) Science , vol.226 , pp. 694-696
    • O'brien, A.D.1    Newland, J.W.2    Miller, S.F.3    Holmes, R.K.4    Smith, H.W.5    Formal, S.B.6
  • 50
    • 85193165213 scopus 로고    scopus 로고
    • Bacteriophages: Lipid containing
    • Wiley, Chichester
    • Oksanen HM, Poranen MM, Bamford DH (2010) Bacteriophages: lipid containing. In: eLS. Wiley, Chichester
    • (2010) ELS
    • Oksanen, H.M.1    Poranen, M.M.2    Bamford, D.H.3
  • 54
    • 77953718211 scopus 로고    scopus 로고
    • Sequence space and the ongoing expansion of the protein universe
    • Povolotskaya IS, Kondrashov FA (2010) Sequence space and the ongoing expansion of the protein universe. Nature 465:922-926
    • (2010) Nature , vol.465 , pp. 922-926
    • Povolotskaya, I.S.1    Kondrashov, F.A.2
  • 55
    • 2342544133 scopus 로고    scopus 로고
    • Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses
    • Prangishvili D, Garrett RA (2004) Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses. Biochem Soc Trans 32:204-208
    • (2004) Biochem Soc Trans , vol.32 , pp. 204-208
    • Prangishvili, D.1    Garrett, R.A.2
  • 56
    • 33645087247 scopus 로고    scopus 로고
    • Evolutionary genomics of archaeal viruses: Unique viral genomes in the third domain of life
    • Prangishvili D, Garrett RA, Koonin EV (2006) Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. Virus Res 117:52-67
    • (2006) Virus Res , vol.117 , pp. 52-67
    • Prangishvili, D.1    Garrett, R.A.2    Koonin, E.V.3
  • 57
    • 8844266097 scopus 로고    scopus 로고
    • The 1.2-megabase genome sequence of mimivirus
    • Raoult D et al (2004) The 1.2-megabase genome sequence of mimivirus. Science 306:1344-1350
    • (2004) Science , vol.306 , pp. 1344-1350
    • Raoult, D.1
  • 58
    • 78651512436 scopus 로고    scopus 로고
    • The good viruses: Viral mutualistic symbioses
    • Roossinck MJ (2011) The good viruses: viral mutualistic symbioses. Nat Rev Microbiol 9:99-108
    • (2011) Nat Rev Microbiol , vol.9 , pp. 99-108
    • Roossinck, M.J.1
  • 59
    • 73449111430 scopus 로고    scopus 로고
    • Collins, FPR-Books, Sheffield
    • Ryan F (2009) Virolution. Collins, FPR-Books, Sheffield
    • (2009) Virolution
    • Ryan, F.1
  • 61
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses-major players in the global ecosystem
    • Suttle CA (2007) Marine viruses-major players in the global ecosystem. Nat Rev Microbiol 5:801-812
    • (2007) Nat Rev Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 62
    • 0023661947 scopus 로고
    • Group selection of early replicators and the origin of life
    • Szathmáry E, Demeter L (1987) Group selection of early replicators and the origin of life. J Theor Biol 128:463-486
    • (1987) J Theor Biol , vol.128 , pp. 463-486
    • Szathmáry, E.1    Demeter, L.2
  • 63
    • 33745972414 scopus 로고    scopus 로고
    • Retroviral invasion of the koala genome
    • Tarlinton RE, Meers J, Young PR (2006) Retroviral invasion of the koala genome. Nature 442:79-81
    • (2006) Nature , vol.442 , pp. 79-81
    • Tarlinton, R.E.1    Meers, J.2    Young, P.R.3
  • 64
    • 77952332096 scopus 로고    scopus 로고
    • A formal test of the theory of universal common ancestry
    • Theobald DL (2010) A formal test of the theory of universal common ancestry. Nature 465:219-222
    • (2010) Nature , vol.465 , pp. 219-222
    • Theobald, D.L.1
  • 67
    • 77949266054 scopus 로고    scopus 로고
    • Viruses are essential agents within the roots and stem of the tree of life
    • Villarreal LP, Witzany G (2010) Viruses are essential agents within the roots and stem of the tree of life. J Theor Biol 262:698-710
    • (2010) J Theor Biol , vol.262 , pp. 698-710
    • Villarreal, L.P.1    Witzany, G.2
  • 68
    • 22144446352 scopus 로고    scopus 로고
    • Coevolutionary arms races between bacteria and bacteriophage
    • Weitz JS, Hartman H, Levin SA (2005) Coevolutionary arms races between bacteria and bacteriophage. Proc Natl Acad Sci USA 102:9535-9540. doi: 10.1073/pnas.0504062102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9535-9540
    • Weitz, J.S.1    Hartman, H.2    Levin, S.A.3
  • 70
    • 0032499698 scopus 로고    scopus 로고
    • The universal ancestor
    • Woese C (1998) The universal ancestor. Proc Natl Acad Sci USA 95(12):6854-6859
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.12 , pp. 6854-6859
    • Woese, C.1
  • 71
    • 0034682457 scopus 로고    scopus 로고
    • Interpreting the universal phylogenetic tree
    • Woese CR (2000) Interpreting the universal phylogenetic tree. Proc Natl Acad Sci USA 97:8392-8396
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 8392-8396
    • Woese, C.R.1
  • 72
    • 0037173066 scopus 로고    scopus 로고
    • On the evolution of cells
    • Woese CR (2002) On the evolution of cells. Proc Natl Acad Sci USA 99:8742-8747
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 8742-8747
    • Woese, C.R.1
  • 73
    • 39449104220 scopus 로고    scopus 로고
    • Identification and investigation of ORFans in the viral world
    • Yin Y, Fischer D (2008) Identification and investigation of ORFans in the viral world. BMC Genomics 9:24
    • (2008) BMC Genomics , vol.9 , pp. 24
    • Yin, Y.1    Fischer, D.2


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