메뉴 건너뛰기




Volumn 5, Issue 10, 2014, Pages 1126-1131

PyRate: A new program to estimate speciation and extinction rates from incomplete fossil data

Author keywords

Bayesian; BDMCMC; Birth death process; Diversification rates; Diversity dynamics; Macroevolution

Indexed keywords


EID: 84931561981     PISSN: None     EISSN: 2041210X     Source Type: Journal    
DOI: 10.1111/2041-210X.12263     Document Type: Article
Times cited : (96)

References (24)
  • 1
    • 0030595819 scopus 로고    scopus 로고
    • Constant extinction, constrained diversification, and uncoordinated stasis in North American mammals
    • Alroy, J. (1996) Constant extinction, constrained diversification, and uncoordinated stasis in North American mammals. Palaeogeography, Palaeoclimatology, Palaeoecology, 127, 285-311.
    • (1996) Palaeogeography, Palaeoclimatology, Palaeoecology , vol.127 , pp. 285-311
    • Alroy, J.1
  • 3
    • 84893488015 scopus 로고    scopus 로고
    • fitdistrplus: help to fit of a parametric distribution to non-censored or censored data
    • R package version 1.0-1.
    • Delignette-Muller, M.L., Pouillot, R., Denis, J.-B. & Dutang, C. (2013) fitdistrplus: help to fit of a parametric distribution to non-censored or censored data. R package version 1.0-1.
    • (2013)
    • Delignette-Muller, M.L.1    Pouillot, R.2    Denis, J.-B.3    Dutang, C.4
  • 4
    • 0034471322 scopus 로고    scopus 로고
    • Origination and extinction components of taxonomic diversity: general problems
    • Foote, M. (2000) Origination and extinction components of taxonomic diversity: general problems. Paleobiology, 26, 74-102.
    • (2000) Paleobiology , vol.26 , pp. 74-102
    • Foote, M.1
  • 5
    • 0012131679 scopus 로고    scopus 로고
    • Origination and extinction through the Phanerozoic: a new approach
    • Foote, M. (2003) Origination and extinction through the Phanerozoic: a new approach. Journal of Geology, 111, 125-148.
    • (2003) Journal of Geology , vol.111 , pp. 125-148
    • Foote, M.1
  • 6
    • 33645666411 scopus 로고    scopus 로고
    • New and Old Worlds database of fossil mammals (NOW)
    • University of Helsinki.
    • Fortelius, M. (2013) New and Old Worlds database of fossil mammals (NOW). University of Helsinki. http://www.helsinki.fi/science/now/.
    • (2013)
    • Fortelius, M.1
  • 8
    • 77956889087 scopus 로고
    • Reversible jump Markov chain Monte Carlo and Bayesian model determination
    • Green, P.J. (1995) Reversible jump Markov chain Monte Carlo and Bayesian model determination. Biometrika, 82, 711-732.
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 9
    • 65249089468 scopus 로고    scopus 로고
    • PanTHERIA: a species-level database of life-history, ecology and geography of extant and recently extinct mammals
    • Jones, K.E., Bielby, J., Cardillo, M., Fritz, S.A., O'Dell, J., Orme, C.D.L. et al. (2009) PanTHERIA: a species-level database of life-history, ecology and geography of extant and recently extinct mammals. Ecology, 90, 2648.
    • (2009) Ecology , vol.90 , pp. 2648
    • Jones, K.E.1    Bielby, J.2    Cardillo, M.3    Fritz, S.A.4    O'Dell, J.5    Orme, C.D.L.6
  • 11
    • 0000231623 scopus 로고
    • Maximum likelihood estimation in the birth-and-death process
    • Keiding, N. (1975) Maximum likelihood estimation in the birth-and-death process. The Annals of Statistics, 3, 363-372.
    • (1975) The Annals of Statistics , vol.3 , pp. 363-372
    • Keiding, N.1
  • 12
    • 33644826560 scopus 로고    scopus 로고
    • Computing Bayes factors using thermodynamic integration
    • Lartillot, N. & Philippe, H. (2006) Computing Bayes factors using thermodynamic integration. Systematic Biology, 55, 195-207.
    • (2006) Systematic Biology , vol.55 , pp. 195-207
    • Lartillot, N.1    Philippe, H.2
  • 13
    • 35048862263 scopus 로고    scopus 로고
    • The rise and fall of species: implications for macroevolutionary and macroecological studies
    • Liow, L.H. & Stenseth, N.C. (2007) The rise and fall of species: implications for macroevolutionary and macroecological studies. Proceedings of the Royal Society B: Biological Sciences, 274, 2745-2752.
    • (2007) Proceedings of the Royal Society B: Biological Sciences , vol.274 , pp. 2745-2752
    • Liow, L.H.1    Stenseth, N.C.2
  • 14
    • 77950816822 scopus 로고    scopus 로고
    • Global occurrence trajectories of microfossils: environmental volatility and the rise and fall of individual species
    • Liow, L.H., Skaug, H.J., Ergon, T. & Schweder, T. (2010) Global occurrence trajectories of microfossils: environmental volatility and the rise and fall of individual species. Paleobiology, 36, 224-252.
    • (2010) Paleobiology , vol.36 , pp. 224-252
    • Liow, L.H.1    Skaug, H.J.2    Ergon, T.3    Schweder, T.4
  • 15
    • 84895559394 scopus 로고    scopus 로고
    • Phylogenetic approaches for studying diversification
    • Morlon, H. (2014) Phylogenetic approaches for studying diversification. Ecology Letters, 17, 508-525.
    • (2014) Ecology Letters , vol.17 , pp. 508-525
    • Morlon, H.1
  • 16
    • 77954661368 scopus 로고    scopus 로고
    • Diversity dynamics: molecular phylogenies need the fossil record
    • Quental, T.B. & Marshall, C.R. (2010) Diversity dynamics: molecular phylogenies need the fossil record. Trends in Ecology & Evolution, 25, 434-441.
    • (2010) Trends in Ecology & Evolution , vol.25 , pp. 434-441
    • Quental, T.B.1    Marshall, C.R.2
  • 17
    • 84880514000 scopus 로고    scopus 로고
    • How the Red Queen drives terrestrial mammals to extinction
    • Quental, T.B. & Marshall, C.R. (2013) How the Red Queen drives terrestrial mammals to extinction. Science, 341, 290-292.
    • (2013) Science , vol.341 , pp. 290-292
    • Quental, T.B.1    Marshall, C.R.2
  • 18
    • 77953910538 scopus 로고    scopus 로고
    • Extinction rates should not be estimated from molecular phylogenies
    • Rabosky, D.L. (2010) Extinction rates should not be estimated from molecular phylogenies. Evolution, 64, 1816-1824.
    • (2010) Evolution , vol.64 , pp. 1816-1824
    • Rabosky, D.L.1
  • 21
    • 36249028141 scopus 로고    scopus 로고
    • Estimating diversification rates from phylogenetic information
    • Ricklefs, R.E. (2007) Estimating diversification rates from phylogenetic information. Trends in Ecology & Evolution, 22, 601-610.
    • (2007) Trends in Ecology & Evolution , vol.22 , pp. 601-610
    • Ricklefs, R.E.1
  • 22
    • 0000750442 scopus 로고
    • Phanerozoic marine diversity and the fossil record
    • Sepkoski, J.J., Bambach, R.K., Raup, D.M. & Valentine, J.W. (1981) Phanerozoic marine diversity and the fossil record. Nature, 293, 435-437.
    • (1981) Nature , vol.293 , pp. 435-437
    • Sepkoski, J.J.1    Bambach, R.K.2    Raup, D.M.3    Valentine, J.W.4
  • 23
    • 84898983183 scopus 로고    scopus 로고
    • Bayesian estimation of speciation and extinction from incomplete fossil occurrence data
    • Silvestro, D., Schnitzler, J., Liow, L.H., Antonelli, A. & Salamin, N. (2014) Bayesian estimation of speciation and extinction from incomplete fossil occurrence data. Systematic Biology, 63, 349-367.
    • (2014) Systematic Biology , vol.63 , pp. 349-367
    • Silvestro, D.1    Schnitzler, J.2    Liow, L.H.3    Antonelli, A.4    Salamin, N.5
  • 24
    • 84873587932 scopus 로고    scopus 로고
    • How can we improve accuracy of macroevolutionary rate estimates?
    • Stadler, T. (2013) How can we improve accuracy of macroevolutionary rate estimates? Systematic Biology, 62, 321-329.
    • (2013) Systematic Biology , vol.62 , pp. 321-329
    • Stadler, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.