메뉴 건너뛰기




Volumn 200, Issue 2, 2015, Pages 591-599

Positive selection at the polyhomeotic locus led to decreased thermosensitivity of gene expression in temperate drosophila melanogaster

Author keywords

Environmental sensitivity; Gene regulation; Polycomb group; Positive selection

Indexed keywords

ADULT; AFRICAN; ALLELE; ARTICLE; CONTROLLED STUDY; DNA POLYMORPHISM; DNA SEQUENCE; DROSOPHILA MELANOGASTER; EUROPEAN; GENE CONTROL; GENE EXPRESSION; GENE LOCUS; GENETIC SELECTION; GENETIC VARIABILITY; HEAT SENSITIVITY; INSECT GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; PROMOTER REGION; REPORTER GENE; SELECTIVE SWEEP; X CHROMOSOME; ANIMAL; GENE EXPRESSION REGULATION; GENETIC POLYMORPHISM; GENETICS; HAPLOTYPE; POPULATION GENETICS; TEMPERATURE SENSE;

EID: 84931400486     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.115.177030     Document Type: Article
Times cited : (18)

References (46)
  • 1
    • 0036236773 scopus 로고    scopus 로고
    • A complex array of dna-binding proteins required for pairing-sensitive silencing by a polycomb group response element from the drosophila engrailed gene
    • Americo, J., M. Whiteley, J. L. Brown, M. Fujioka, J. B. Jaynes et al., 2002 A complex array of DNA-binding proteins required for pairing-sensitive silencing by a polycomb group response element from the Drosophila engrailed gene. Genetics 160: 1561–1571.
    • (2002) Genetics , vol.160 , pp. 1561-1571
    • Americo, J.1    Whiteley, M.2    Brown, J.L.3    Fujioka, M.4    Jaynes, J.B.5
  • 3
    • 0141706718 scopus 로고    scopus 로고
    • Inheritance of polycomb-dependent chromosomal interactions in drosophila
    • Bantignies, F., C. Grimaud, S. Lavrov, M. Gabut, and G. Cavalli, 2003 Inheritance of Polycomb-dependent chromosomal interactions in Drosophila. Genes Dev. 17: 2406–2420.
    • (2003) Genes Dev , vol.17 , pp. 2406-2420
    • Bantignies, F.1    Grimaud, C.2    Lavrov, S.3    Gabut, M.4    Cavalli, G.5
  • 4
    • 1642269679 scopus 로고    scopus 로고
    • Identifying adaptive genetic divergence among populations from genome scans
    • Beaumont, M. A., and D. J. Balding, 2004 Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969–980.
    • (2004) Mol. Ecol , vol.13 , pp. 969-980
    • Beaumont, M.A.1    Balding, D.J.2
  • 5
    • 44449101058 scopus 로고    scopus 로고
    • Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in drosophila
    • Beisswanger, S., and W. Stephan, 2008 Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila. Proc. Natl. Acad. Sci. USA 105: 5447–5452.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 5447-5452
    • Beisswanger, S.1    Stephan, W.2
  • 6
    • 33644784801 scopus 로고    scopus 로고
    • Evidence for a selective sweep in the wapl region of drosophila melanogaster
    • Beisswanger, S., W. Stephan, and D. De Lorenzo, 2006 Evidence for a selective sweep in the wapl region of Drosophila melanogaster. Genetics 172: 265–274.
    • (2006) Genetics , vol.172 , pp. 265-274
    • Beisswanger, S.1    Stephan, W.2    De Lorenzo, D.3
  • 7
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Y. Hochberg, 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B Stat. Methodol. 57: 289–300.
    • (1995) J. R. Stat. Soc. Ser. B Stat. Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 8
    • 33847660443 scopus 로고    scopus 로고
    • An optimized transgenesis system for drosophila using germ-line-specific fc31 integrases
    • Bischof, J., R. K. Maeda, M. Hediger, F. Karch, and K. Basler, 2007 An optimized transgenesis system for Drosophila using germ-line-specific fC31 integrases. Proc. Natl. Acad. Sci. USA 104: 3312–3317.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 3312-3317
    • Bischof, J.1    Maeda, R.K.2    Hediger, M.3    Karch, F.4    Basler, K.5
  • 9
    • 32044462966 scopus 로고    scopus 로고
    • Efficient and specific targeting of polycomb group proteins requires cooperative interaction between grainyhead and pleiohomeotic
    • Blastyák, A., R. K. Mishra, F. Karch, and H. Gyurkovics, 2006 Efficient and specific targeting of Polycomb group proteins requires cooperative interaction between Grainyhead and Pleiohomeotic. Mol. Cell. Biol. 26: 1434–1444.
    • (2006) Mol. Cell. Biol , vol.26 , pp. 1434-1444
    • Blastyák, A.1    Mishra, R.K.2    Karch, F.3    Gyurkovics, H.4
  • 10
    • 0030723797 scopus 로고    scopus 로고
    • A silencer is required for maintenance of transcriptional repression throughout drosophila development
    • Busturia, A., C. D. Wightman, and S. Sakonju, 1997 A silencer is required for maintenance of transcriptional repression throughout Drosophila development. Development 124: 4343–4350.
    • (1997) Development , vol.124 , pp. 4343-4350
    • Busturia, A.1    Wightman, C.D.2    Sakonju, S.3
  • 11
    • 0028321783 scopus 로고
    • A polycomb response element in the ubx gene that determines an epigenetically inherited state of repression
    • Chan, C. S., L. Rastelli, and V. Pirrotta, 1994 A Polycomb response element in the Ubx gene that determines an epigenetically inherited state of repression. EMBO J. 13: 2553.
    • (1994) EMBO J , vol.13 , pp. 2553
    • Chan, C.S.1    Rastelli, L.2    Pirrotta, V.3
  • 12
    • 34249804498 scopus 로고    scopus 로고
    • Using flyatlas to identify better drosophila melanogaster models of human disease
    • Chintapalli, V. R., J. Wang, and J. A. Dow, 2007 Using FlyAtlas to identify better Drosophila melanogaster models of human disease. Nat. Genet. 39: 715–720.
    • (2007) Nat. Genet , vol.39 , pp. 715-720
    • Chintapalli, V.R.1    Wang, J.2    Dow, J.A.3
  • 13
    • 0000056797 scopus 로고    scopus 로고
    • in Animals and Temperature: Phenotypic and Evolutionary Adaptation, edited by I. A. Johnston, and A. F. Bennett. Cambridge University Press, Cambridge, UK
    • Clarke, A., 1996 The influence of climate chance of the distribution and evolution of organisms, pp. 377–407 in Animals and Temperature: Phenotypic and Evolutionary Adaptation, edited by I. A. Johnston, and A. F. Bennett. Cambridge University Press, Cambridge, UK.
    • (1996) The Influence of Climate Chance of the Distribution and Evolution of Organisms , pp. 377-407
    • Clarke, A.1
  • 14
    • 0023998356 scopus 로고
    • Genetic variation of drosophila melanogaster natural populations
    • David, J. R., and P. Capy, 1988 Genetic variation of Drosophila melanogaster natural populations. Trends Genet. 4: 106–111.
    • (1988) Trends Genet , vol.4 , pp. 106-111
    • David, J.R.1    Capy, P.2
  • 15
    • 15844430105 scopus 로고    scopus 로고
    • Recruitment of drosophila polycomb group proteins to chromatin by dsp1
    • Déjardin, J., A. Rappailles, O. Cuvier, C. Grimaud, M. Decoville et al., 2005 Recruitment of Drosophila Polycomb group proteins to chromatin by DSP1. Nature 434: 533–538.
    • (2005) Nature , vol.434 , pp. 533-538
    • Déjardin, J.1    Rappailles, A.2    Cuvier, O.3    Grimaud, C.4    Decoville, M.5
  • 16
    • 0027312789 scopus 로고
    • Polyhomeotic regulatory sequences induce developmental regulator-dependent variegation and targeted p-element insertions in drosophila
    • Fauvarque, M. O., and J. M. Dura, 1993 Polyhomeotic regulatory sequences induce developmental regulator-dependent variegation and targeted P-element insertions in Drosophila. Genes Dev. 7: 1508–1520.
    • (1993) Genes Dev , vol.7 , pp. 1508-1520
    • Fauvarque, M.O.1    Dura, J.M.2
  • 17
    • 77954656491 scopus 로고    scopus 로고
    • Drosophila melanogaster recombination rate calculator
    • Fiston-Lavier, A.-S., N. D. Singh, M. Lipatov, and D. A. Petrov, 2010 Drosophila melanogaster recombination rate calculator. Gene 463: 18–20.
    • (2010) Gene , vol.463 , pp. 18-20
    • Fiston-Lavier, A.-S.1    Singh, N.D.2    Lipatov, M.3    Petrov, D.A.4
  • 18
    • 58149347836 scopus 로고    scopus 로고
    • A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A bayesian perspective
    • Foll, M., and O. Gaggiotti, 2008 A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180: 977–993.
    • (2008) Genetics , vol.180 , pp. 977-993
    • Foll, M.1    Gaggiotti, O.2
  • 19
    • 79851496149 scopus 로고    scopus 로고
    • Segregating variation in the polycomb group gene cramped alters the effect of temperature on multiple traits
    • Gibert, J.-M., F. Karch, and C. Schlötterer, 2011 Segregating variation in the polycomb group gene cramped alters the effect of temperature on multiple traits. PLoS Genet. 7: e1001280.
    • (2011) Plos Genet , pp. 7
    • Gibert, J.-M.1    Karch, F.2    Schlötterer, C.3
  • 20
    • 0036790812 scopus 로고    scopus 로고
    • Hitchhiking mapping: A population-based fine-mapping strategy for adaptive mutations in drosophila melanogaster
    • Harr, B., M. Kauer, and C. Schlötterer, 2002 Hitchhiking mapping: a population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 99: 12949–12954.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12949-12954
    • Harr, B.1    Kauer, M.2    Schlötterer, C.3
  • 21
    • 54949151898 scopus 로고    scopus 로고
    • Evolutionary plasticity of polycomb/trithorax response elements in drosophila species
    • Hauenschild, A., L. Ringrose, C. Altmutter, R. Paro, and M. Rehmsmeier, 2008 Evolutionary plasticity of polycomb/trithorax response elements in Drosophila species. PLoS Biol. 6: e261.
    • (2008) Plos Biol , pp. 6
    • Hauenschild, A.1    Ringrose, L.2    Altmutter, C.3    Paro, R.4    Rehmsmeier, M.5
  • 22
    • 45449087921 scopus 로고    scopus 로고
    • Vandesompele, 2007 qbase relative quantification framework and software for management and automated analysis of real-time quantitative pcr data
    • Hellemans, J., G. Mortier, A. De Paepe, F. Speleman, and J. Vandesompele, 2007 qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 8: R19.
    • Genome Biol , vol.8 , pp. R19
    • Hellemans, J.1    Mortier, G.2    De Paepe, A.3    Speleman, F.4
  • 23
    • 84871958299 scopus 로고    scopus 로고
    • A second-generation assembly of the drosophila simulans genome provides new insights into patterns of lineage-specific divergence
    • Hu, T. T., M. B. Eisen, K. R. Thornton, and P. Andolfatto, 2013 A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence. Genome Res. 23: 89–98.
    • (2013) Genome Res , vol.23 , pp. 89-98
    • Hu, T.T.1    Eisen, M.B.2    Thornton, K.R.3    Andolfatto, P.4
  • 24
    • 84873910684 scopus 로고    scopus 로고
    • in Advances in Genetics, edited by J. C. Dunlap, S. F. Goodwin, and T. Friedmann, Academic Press, New York/London/San Diego
    • Kassis, J. A., and J. L. Brown, 2013 Polycomb group response elements in Drosophila and vertebrates, pp. 83–118 in Advances in Genetics, edited by J. C. Dunlap, S. F. Goodwin, and T. Friedmann. Academic Press, New York/London/San Diego.
    • (2013) Polycomb Group Response Elements in Drosophila and Vertebrates , pp. 83-118
    • Kassis, J.A.1    Brown, J.L.2
  • 25
    • 0036189827 scopus 로고    scopus 로고
    • Detecting a local signature of genetic hitchhiking along a recombining chromosome
    • Kim, Y., and W. Stephan, 2002 Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics 160: 765–777.
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 26
    • 44149127446 scopus 로고    scopus 로고
    • Replacement of a drosophila polycomb response element core, and in situ analysis of its dna motifs
    • Kozma, G., W. Bender, and L. Sipos, 2008 Replacement of a Drosophila Polycomb response element core, and in situ analysis of its DNA motifs. Mol. Genet. Genomics 279: 595–603.
    • (2008) Mol. Genet. Genomics , vol.279 , pp. 595-603
    • Kozma, G.1    Bender, W.2    Sipos, L.3
  • 27
    • 1842575602 scopus 로고    scopus 로고
    • How two afrotropical endemics made two cosmopolitan human commensals: The drosophila melanogaster-d. Simulans palaeogeographic riddle
    • Lachaise, D., and J.-F. Silvain, 2004 How two Afrotropical endemics made two cosmopolitan human commensals: the Drosophila melanogaster-D. simulans palaeogeographic riddle. Genetica 120: 17–39.
    • (2004) Genetica , vol.120 , pp. 17-39
    • Lachaise, D.1    Silvain, J.-F.2
  • 28
    • 79959478938 scopus 로고    scopus 로고
    • Approximate bayesian analysis of drosophila melanogaster polymorphism data reveals a recent colonization of southeast asia
    • Laurent, S. J., A. Werzner, L. Excoffier, and W. Stephan, 2011 Approximate Bayesian analysis of Drosophila melanogaster polymorphism data reveals a recent colonization of Southeast Asia. Mol. Biol. Evol. 28: 2041–2051.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2041-2051
    • Laurent, S.J.1    Werzner, A.2    Excoffier, L.3    Stephan, W.4
  • 29
    • 52049097576 scopus 로고    scopus 로고
    • Evidence of spatially varying selection acting on four chromatin-remodeling loci in drosophila melanogaster
    • Levine, M. T., and D. J. Begun, 2008 Evidence of spatially varying selection acting on four chromatin-remodeling loci in Drosophila melanogaster. Genetics 179: 475–485.
    • (2008) Genetics , vol.179 , pp. 475-485
    • Levine, M.T.1    Begun, D.J.2
  • 30
    • 78650467110 scopus 로고    scopus 로고
    • Whole-genome expression plasticity across tropical and temperate drosophila melanogaster populations from eastern australia
    • Levine, M. T., M. L. Eckert, and D. J. Begun, 2011 Whole-genome expression plasticity across tropical and temperate Drosophila melanogaster populations from Eastern Australia. Mol. Biol. Evol. 28: 249–256.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 249-256
    • Levine, M.T.1    Eckert, M.L.2    Begun, D.J.3
  • 31
    • 33750491918 scopus 로고    scopus 로고
    • Inferring the demographic history and rate of adaptive substitution in drosophila
    • Li, H., and W. Stephan, 2006 Inferring the demographic history and rate of adaptive substitution in Drosophila. PLoS Genet. 2: e166.
    • (2006) Plos Genet , vol.e166 , pp. 2
    • Li, H.1    Stephan, W.2
  • 33
    • 77955759338 scopus 로고    scopus 로고
    • Searching for footprints of positive selection in whole-genome snp data from nonequilibrium populations
    • Pavlidis, P., J. D. Jensen, and W. Stephan, 2010 Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations. Genetics 185: 907–922.
    • (2010) Genetics , vol.185 , pp. 907-922
    • Pavlidis, P.1    Jensen, J.D.2    Stephan, W.3
  • 34
    • 84883252048 scopus 로고    scopus 로고
    • Sweed: Likelihood-based detection of selective sweeps in thousands of genomes
    • Pavlidis, P., D. Živković, A. Stamatakis, and N. Alachiotis, 2013 SweeD: likelihood-based detection of selective sweeps in thousands of genomes. Mol. Biol. Evol. 30: 2224–2234.
    • (2013) Mol. Biol. Evol , vol.30 , pp. 2224-2234
    • Pavlidis, P.1    Živković, D.2    Stamatakis, A.3    Alachiotis, N.4
  • 36
    • 84872014607 scopus 로고    scopus 로고
    • Population genomics of sub-saharan drosophila melanogaster: African diversity and non-african admixture
    • Pool, J. E., R. B. Corbett-Detig, R. P. Sugino, K. A. Stevens, C. M. Cardeno et al., 2012 Population genomics of sub-Saharan Drosophila melanogaster: African diversity and non-African admixture. PLoS Genet. 8: e1003080.
    • (2012) Plos Genet , pp. 8
    • Pool, J.E.1    Corbett-Detig, R.B.2    Sugino, R.P.3    Stevens, K.A.4    Cardeno, C.M.5
  • 37
    • 45149108400 scopus 로고    scopus 로고
    • Bayesian variable selection for detecting adaptive genomic differences among populations
    • Riebler, A., L. Held, and W. Stephan, 2008 Bayesian variable selection for detecting adaptive genomic differences among populations. Genetics 178: 1817–1829.
    • (2008) Genetics , vol.178 , pp. 1817-1829
    • Riebler, A.1    Held, L.2    Stephan, W.3
  • 39
    • 58849088872 scopus 로고    scopus 로고
    • Functional anatomy of polycomb and trithorax chromatin landscapes in drosophila embryos
    • Schuettengruber, B., M. Ganapathi, B. Leblanc, M. Portoso, R. Jaschek et al., 2009 Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos. PLoS Biol. 7: e1000013.
    • (2009) Plos Biol , pp. 7
    • Schuettengruber, B.1    Ganapathi, M.2    Leblanc, B.3    Portoso, M.4    Jaschek, R.5
  • 40
    • 76749164914 scopus 로고    scopus 로고
    • Alternative epigenetic chromatin states of polycomb target genes
    • Schwartz, Y. B., T. G. Kahn, P. Stenberg, K. Ohno, R. Bourgon et al., 2010 Alternative epigenetic chromatin states of polycomb target genes. PLoS Genet. 6: e1000805.
    • (2010) Plos Genet , pp. 6
    • Schwartz, Y.B.1    Kahn, T.G.2    Stenberg, P.3    Ohno, K.4    Bourgon, R.5
  • 41
    • 84899482505 scopus 로고    scopus 로고
    • What are memories made of? How polycomb and trithorax proteins mediate epigenetic memory
    • Steffen, P. A., and L. Ringrose, 2014 What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory. Nat. Rev. Mol. Cell Biol. 15: 340–356.
    • (2014) Nat. Rev. Mol. Cell Biol , vol.15 , pp. 340-356
    • Steffen, P.A.1    Ringrose, L.2
  • 42
    • 33846589670 scopus 로고    scopus 로고
    • The recent demographic and adaptive history of drosophila melanogaster
    • Stephan, W., and H. Li, 2007 The recent demographic and adaptive history of Drosophila melanogaster. Heredity 98: 65–68.
    • (2007) Heredity , vol.98 , pp. 65-68
    • Stephan, W.1    Li, H.2
  • 43
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by dna polymorphism
    • Tajima, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585– 595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 45
  • 46
    • 0028788045 scopus 로고
    • Drosophila polycomb-group regulated chromatin inhibits the accessibility of a trans-activator to its target dna
    • Zink, D., and R. Paro, 1995 Drosophila Polycomb-group regulated chromatin inhibits the accessibility of a trans-activator to its target DNA. EMBO J. 14: 5660.
    • (1995) EMBO J , vol.14 , pp. 5660
    • Zink, D.1    Paro, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.