-
1
-
-
0028798015
-
Getting the inside out: The transporter associated with antigen processing (TAP) and the presentation of viral antigen
-
Hill, A.; Ploegh, H. Getting the inside out: The transporter associated with antigen processing (TAP) and the presentation of viral antigen. Proc. Natl. Acad. Sci., 1995, 92, 341-343.
-
(1995)
Proc. Natl. Acad. Sci.
, vol.92
, pp. 341-343
-
-
Hill, A.1
Ploegh, H.2
-
2
-
-
0031895637
-
Mechanisms of MHC class I-restricted antigen processing
-
Pamer, E.; Cresswell, P. Mechanisms of MHC class I-restricted antigen processing. Annu. Rev. Immunol., 1998, 16, 323-358.
-
(1998)
Annu. Rev. Immunol.
, vol.16
, pp. 323-358
-
-
Pamer, E.1
Cresswell, P.2
-
3
-
-
0141992093
-
The MHC class i antigen presentation pathway: Strategies for viral immune ecasion (review)
-
Hewitt, W.E. The MHC class I antigen presentation pathway: strategies for viral immune ecasion (review). Immunology, 2003, 110, 163-169.
-
(2003)
Immunology
, vol.110
, pp. 163-169
-
-
Hewitt, W.E.1
-
4
-
-
0036785536
-
Study of antigen-processing steps reveals preferences explaining differential biological outcomes of two HLA-A2-Restricted Immunodominant Epitopes from Human Immunodeficiency Virus Type 1
-
Cohen, W.M.; Bianco, A.; Connan, F.; Camoin, L.; Dalod, M.; Lauvau, G.; Ferriès, E.; Culmann-Penciolelli, B.; van Endert, P.M.; Briand, J.P.; Choppin, J.; Guillet, J.G. Study of antigen-processing steps reveals preferences explaining differential biological outcomes of two HLA-A2-Restricted Immunodominant Epitopes from Human Immunodeficiency Virus Type 1. J. Virol., 2002, 72(20), 10219-10225.
-
(2002)
J. Virol.
, vol.72
, Issue.20
, pp. 10219-10225
-
-
Cohen, W.M.1
Bianco, A.2
Connan, F.3
Camoin, L.4
Dalod, M.5
Lauvau, G.6
Ferriès, E.7
Culmann-Penciolelli, B.8
Van Endert, P.M.9
Briand, J.P.10
Choppin, J.11
Guillet, J.G.12
-
5
-
-
42149114653
-
Differential contribution of TAP and tapasin to HLA class i antigen expression
-
Belicha-Villanueva, A.; McEvoy, S.; Cycon, K. Differential contribution of TAP and tapasin to HLA class I antigen expression. Immunology, 2008, 124, 112-120.
-
(2008)
Immunology
, vol.124
, pp. 112-120
-
-
Belicha-Villanueva, A.1
McEvoy, S.2
Cycon, K.3
-
6
-
-
77951247977
-
Integrating in silico and in vitro analysis of peptide binding affinity to hla-cw∗0102: A bioinformatic approach to the prediction of new epitopes
-
Walshe, V.A.; Hattotuwagama, C.K.; Doytchinova, I.A.; Wong, MaiLee, Macdonald I K, Mulder A, Claas F H J, Pellegrino P, Turner J, Williams I, Turnbull E L, Borrow P, Flower D R. Integrating In Silico and In Vitro Analysis of Peptide Binding Affinity to HLA-Cw∗0102: A Bioinformatic Approach to the Prediction of New Epitopes. PLoS ONE, 2009, 4(11), e8095.
-
(2009)
PLoS ONE
, vol.4
, Issue.11
, pp. e8095
-
-
Walshe, V.A.1
Hattotuwagama, C.K.2
Doytchinova, I.A.3
Mailee, W.4
Macdonald, I.K.5
Mulder, A.6
Claas, F.H.J.7
Pellegrino, P.8
Turner, J.9
Williams, I.10
Turnbull, E.L.11
Borrow, P.12
Flower, D.R.13
-
7
-
-
47649130715
-
Thermodynamics of T-cell receptor-peptide/MHC interactions: Progress and opportunities
-
Armstrong, K. M.; Insaidoo, F. K.; Baker, B. M. Thermodynamics of T-cell receptor-peptide/MHC interactions: progress and opportunities. J. Mol. Recognit., 2008, 21, 275-287
-
(2008)
J. Mol. Recognit.
, vol.21
, pp. 275-287
-
-
Armstrong, K.M.1
Insaidoo, F.K.2
Baker, B.M.3
-
8
-
-
0042665284
-
Sequence variability analysis of human class i and class II MHC molecules: Functional and structural correlates of amino acid polymorphisms
-
Reche, P. A.; Reinherz, E. L. Sequence variability analysis of human class I and class II MHC molecules: functional and structural correlates of amino acid polymorphisms. J. Mol. Biol., 2003, 331, 623-641.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 623-641
-
-
Reche, P.A.1
Reinherz, E.L.2
-
9
-
-
70449416038
-
Prediction of MHC-peptide binding: A systematic and comprehensive overview
-
Lafuente, E. M.; Reche, P. A. Prediction of MHC-Peptide Binding: A Systematic and Comprehensive Overview. Curr. Pharm. Des., 2009, 15, 3209-3220.
-
(2009)
Curr. Pharm. Des.
, vol.15
, pp. 3209-3220
-
-
Lafuente, E.M.1
Reche, P.A.2
-
10
-
-
71949096416
-
Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior
-
Kim, Y.; Sidney, J.; Pinilla, C.; Sette, A.; Peters, B. Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior. BMC Bioinformatics, 2009, 10, 394.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 394
-
-
Kim, Y.1
Sidney, J.2
Pinilla, C.3
Sette, A.4
Peters, B.5
-
11
-
-
33745584371
-
A community resource benchmarking predictions of peptide binding to MHC-I molecules
-
Peters, B.; Bui, H.H.; Frankild, S.; Nielson, M.; Lundegaard, C.; Kostem, E.; Basch, D.; Lamberth, K.; Harndahl, M.; Fleri, W.; Wilson, S.S.; Sidney, J.; Lund, O.; Buus, S.; Sette, A. A community resource benchmarking predictions of peptide binding to MHC-I molecules. PLoS Comput. Biol., 2006, 2(6), e65.
-
(2006)
PLoS Comput. Biol.
, vol.2
, Issue.6
, pp. e65
-
-
Peters, B.1
Bui, H.H.2
Frankild, S.3
Nielson, M.4
Lundegaard, C.5
Kostem, E.6
Basch, D.7
Lamberth, K.8
Harndahl, M.9
Fleri, W.10
Wilson, S.S.11
Sidney, J.12
Lund, O.13
Buus, S.14
Sette, A.15
-
12
-
-
21344466799
-
Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications
-
Bui, H.H.; Sidney, J.; Peters, B.; Sathiamurthy, M.; Sinichi, A.; Purton, K. A.; Mothé, B.;R, Chisari, F. V.; Watkins, D. I.; Sette, A. Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications. Immunogenetics, 2005, 57, 304-314
-
(2005)
Immunogenetics
, vol.57
, pp. 304-314
-
-
Bui, H.H.1
Sidney, J.2
Peters, B.3
Sathiamurthy, M.4
Sinichi, A.5
Purton, K.A.6
Mothé, B.R.7
Chisari, F.V.8
Watkins, D.I.9
Sette, A.10
-
13
-
-
25444476693
-
Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method
-
Peters, B.; Sette, A. Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method. BMC Bioinformatics, 2005, 6, 132.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 132
-
-
Peters, B.1
Sette, A.2
-
14
-
-
2442499729
-
Improved prediction of MHC class i and class II epitopes using a novel Gibbs sampling approach
-
Nielsen, M.; Lundegaard, C.; Worning, P.; Hvid, C. S.; Lamberth, K.; Buus, S.; Brunak, S.; Lund, O. Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. Bioinformatics, 2004, 20(9), 1388-1397
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1388-1397
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Hvid, C.S.4
Lamberth, K.5
Buus, S.6
Brunak, S.7
Lund, O.8
-
15
-
-
39549084433
-
Netmhcpan a method for quantitative predictions of peptide binding to any hla-a and-b locus protein of known sequence
-
Nielsen, M.; Lundegaard, C.; Blicher, T.; Lamberth, K.; Harndahl, M.; Justesen, S.; Røder, G.; Peters, B.; Sette, A.; Lund, O.; Buus, S. NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and-B Locus Protein of Known Sequence. PLoS ONE, 2007, 2(8), e796.
-
(2007)
PLoS ONE
, vol.2
, Issue.8
, pp. e796
-
-
Nielsen, M.1
Lundegaard, C.2
Blicher, T.3
Lamberth, K.4
Harndahl, M.5
Justesen, S.6
Røder, G.7
Peters, B.8
Sette, A.9
Lund, O.10
Buus, S.11
-
16
-
-
48449106045
-
NetMHC-3.0, accurate web accessible predictions of human, mouse and monkey MHC class i affinitiesfor peptides of length 8-11
-
Web Server issue
-
Lundegaard, C.; Lamberth, K.; Harndahl, M.; Buus, S.; Lund, O.; Nielsen, M. NetMHC-3.0, accurate web accessible predictions of human, mouse and monkey MHC class I affinitiesfor peptides of length 8-11. Nucleic Acids Res., 2008, 36(Web Server issue), W509-W512.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W509-W512
-
-
Lundegaard, C.1
Lamberth, K.2
Harndahl, M.3
Buus, S.4
Lund, O.5
Nielsen, M.6
-
17
-
-
10744222046
-
Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach
-
Buus, S.; Lauemøller, S.L.; Worning, P.; Kesmir, C.; Frimurer, T.; Corbet, S.; Fomsgaard, A.; Hilden, J.; Holm, A.; Brunak, S. Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach. Tissue Antigens, 2003, 62, 378-384.
-
(2003)
Tissue Antigens
, vol.62
, pp. 378-384
-
-
Buus, S.1
Lauemøller, S.L.2
Worning, P.3
Kesmir, C.4
Frimurer, T.5
Corbet, S.6
Fomsgaard, A.7
Hilden, J.8
Holm, A.9
Brunak, S.10
-
18
-
-
0037407113
-
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
-
Nielsen, M.; Lundegaard, C.; Worning, P.; Lauemøller, S. L.; Lamberth, K.; Buus, S.; Brunak, S.; Lund, O. Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Sci., 2003, 12, 1007-1017.
-
(2003)
Protein Sci.
, vol.12
, pp. 1007-1017
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Lauemøller, S.L.4
Lamberth, K.5
Buus, S.6
Brunak, S.7
Lund, O.8
-
19
-
-
33750464517
-
SVRMHC prediction server for MHC-binding peptides
-
Wan, J.; Liu, W.; Xu, Q.; Ren, Y.; Flower, D. R.; Li, T. SVRMHC prediction server for MHC-binding peptides. BMC Bioinformatics, 2006, 7, 463.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 463
-
-
Wan, J.1
Liu, W.2
Xu, Q.3
Ren, Y.4
Flower, D.R.5
Li, T.6
-
20
-
-
33746352651
-
Quantitative prediction of mouse class i MHC peptide binding affinity using support vector machine regression (SVR) models
-
Liu, W.; Meng, X.; Xu, Q.; Flower, D.R.; Li, T. Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models. BMC Bioinformatics, 2006, 7, 182
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 182
-
-
Liu, W.1
Meng, X.2
Xu, Q.3
Flower, D.R.4
Li, T.5
-
21
-
-
0037102953
-
Physicochemical explanation of peptide binding to HLA-A∗0201 major histocompatibility complex: A three-dimensional quantitative structure-activity relationship study
-
Doytchinova, I.A.; Flower, D.R. Physicochemical explanation of peptide binding to HLA-A∗0201 major histocompatibility complex: a three-dimensional quantitative structure-activity relationship study. Proteins, 2002, 48, 505-518.
-
(2002)
Proteins
, vol.48
, pp. 505-518
-
-
Doytchinova, I.A.1
Flower, D.R.2
-
22
-
-
33747879440
-
Learning MHC I-peptide binding
-
Jojic, N.; Reyes-Gomez, M.; Heckerman, D.; Kadie, C.; Schueler-Furman, O. Learning MHC I-peptide binding. Bioinformatics, 2006, 22, e227-235.
-
(2006)
Bioinformatics
, vol.22
, pp. e227-235
-
-
Jojic, N.1
Reyes-Gomez, M.2
Heckerman, D.3
Kadie, C.4
Schueler-Furman, O.5
-
23
-
-
84900856927
-
Knowledge based threading approach to model the MHC-binders to MHC class i alleles in Hepatitis e Virus: A clue for epitope-based vaccine design
-
Rathi, B.; Sarangi, A.; Naik, S. Knowledge based threading approach to model the MHC-binders to MHC class I alleles in Hepatitis E Virus: a clue for epitope-based vaccine design. Int. J. Med. Inform., 2010, 5(2), 1-15.
-
(2010)
Int. J. Med. Inform.
, vol.5
, Issue.2
, pp. 1-15
-
-
Rathi, B.1
Sarangi, A.2
Naik, S.3
-
24
-
-
34248562740
-
Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: Application to the TCR-p-MHC complex
-
Zoete, V.; Michielin, O. Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: application to the TCR-p-MHC complex. Protein, 2007, 67,1026-1047.
-
(2007)
Protein
, vol.67
, pp. 1026-1047
-
-
Zoete, V.1
Michielin, O.2
-
25
-
-
76649121529
-
MM-GBSA binding free energy decomposition and T cell receptor engineering
-
Zoete, V.; Irving, M. B.; Michielin, O. MM-GBSA binding free energy decomposition and T cell receptor engineering. J. Mol. Recognit., 2010, 23, 142-152.
-
(2010)
J. Mol. Recognit.
, vol.23
, pp. 142-152
-
-
Zoete, V.1
Irving, M.B.2
Michielin, O.3
-
26
-
-
67649361714
-
Estimation of affinity of HLA-A∗0201 restricted CTL epitope based on the SCORE function
-
Lin, Z.H.; Huai-Liang, W.; Zhu, B.; Wang, Y.Q.; Lin, Y.; Wu, Y.Z. Estimation of affinity of HLA-A∗0201 restricted CTL epitope based on the SCORE function. Protein Pept. Lett., 2009, 16(5), 561-569.
-
(2009)
Protein Pept. Lett.
, vol.16
, Issue.5
, pp. 561-569
-
-
Lin, Z.H.1
Huai-Liang, W.2
Zhu, B.3
Wang, Y.Q.4
Lin, Y.5
Wu, Y.Z.6
-
27
-
-
0035848409
-
Customized versus universal scoring functions: Application to class i MHC-peptide binding free energy predictions
-
Logean, A.; Sette, A.; Rognan, D. Customized versus universal scoring functions: application to class I MHC-peptide binding free energy predictions. Bioorg. Med. Chem. Lett., 2001, 11, 675-679.
-
(2001)
Bioorg. Med. Chem. Lett.
, vol.11
, pp. 675-679
-
-
Logean, A.1
Sette, A.2
Rognan, D.3
-
28
-
-
0023192524
-
Peptide quantitative structure-activity relationships, a multivariate approach
-
Hellberg, S.; Sjöström, M.; Skagerberg, B.; Wold, S. Peptide quantitative structure-activity relationships, a multivariate approach. J. Med. Chem., 1987, 30(7), 1126-1135.
-
(1987)
J. Med. Chem.
, vol.30
, Issue.7
, pp. 1126-1135
-
-
Hellberg, S.1
Sjöström, M.2
Skagerberg, B.3
Wold, S.4
-
29
-
-
0029031962
-
Amino acid side chain descriptors for quantitative structure-activity relationship studies of peptide analogues
-
Collantes, E.R.; Dunn, W.J. Amino acid side chain descriptors for quantitative structure-activity relationship studies of peptide analogues. J. Med. Chem., 1995, 38(14), 2705-2713.
-
(1995)
J. Med. Chem.
, vol.38
, Issue.14
, pp. 2705-2713
-
-
Collantes, E.R.1
Dunn, W.J.2
-
30
-
-
0030641914
-
New 3D theoretical descriptors derived from molecular surface properties: A comparative 3D QSAR study in a series of steroids
-
Bravi, G.; Gancia, E.; Mascagni, P.; Pegna, M.; Todeschini, R.; Zaliani, A. MS-WHIM, new 3D theoretical descriptors derived from molecular surface properties: a comparative 3D QSAR study in a series of steroids. J. Comput. Aided Mol. Des., 1997, 11(1), 79-92.
-
(1997)
J. Comput. Aided Mol. Des.
, vol.11
, Issue.1
, pp. 79-92
-
-
Bravi, G.1
Gancia, E.2
Mascagni, P.3
Pegna, M.4
Todeschini, R.5
Ms-Whim, Z.A.6
-
31
-
-
0027955071
-
A quantitative assay to measure the interaction between immunogenic peptides and purified class i major histocompatibility complex molecules
-
Olsen, A.C.; Pedersen, L.O.; Hansen, A.S.; Nissen, M.H.; Olsen, M.; Hansen, P.R.; Holm, A.; Buus, S. A quantitative assay to measure the interaction between immunogenic peptides and purified class I major histocompatibility complex molecules. Eur. J. Immunol., 1994, 24(2), 385-392.
-
(1994)
Eur. J. Immunol.
, vol.24
, Issue.2
, pp. 385-392
-
-
Olsen, A.C.1
Pedersen, L.O.2
Hansen, A.S.3
Nissen, M.H.4
Olsen, M.5
Hansen, P.R.6
Holm, A.7
Buus, S.8
|