The Diversity of Bacteria Isolated from Antarctic Freshwater Reservoirs Possessing the Ability to Produce Polyhydroxyalkanoates

Current Microbiology

Volumn 69, Issue 5, 2014, Pages 594-603

  Ciesielski, Slawomir ^a   Górniak, Dorota ^a   Możejko, Justyna ^a   Świątecki, Aleksander ^a   Grzesiak, Jakub ^b   Zdanowski, Marek ^b  

^a UNIVERSITY OF WARMIA AND MAZURY IN OLSZTYN   (Poland)

^b INSTITUTE OF BIOCHEMISTRY AND BIOPHYSICS   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FRESH WATER; POLYHYDROXYALKANOIC ACID; RIBOSOME DNA; RNA 16S;

ANTARCTICA; BACTERIAL GENE; BACTERIUM; BIODIVERSITY; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; POLYMERASE CHAIN REACTION;

ANTARCTIC REGIONS; BACTERIA; BIODIVERSITY; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FRESH WATER; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYHYDROXYALKANOATES; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 84930975757     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-014-0629-1     Document Type: Article

References (33)

1. Anderson AJ, Dawes EA (1990) Occurence, metabolism, metabolic role, and industrial uses of bacterial polyhydroxyalkanoates. Microbiol Rev 54:450–472
2. Ayub ND, Tribelli PM, López NI (2009) Polyhydroxyalkanoates are essential for maintenance of redox state in the Antarctic bacterium Pseudomonas sp. 14-3 during low temperature adaptation. Extremophiles 13:59–66
3. Berlanga M, Montero MT, Hernandez-Borrel J, Guerrero R (2006) Rapid spectrofluorometric screening of poly-hydroxyalkanoate-producing bacteria from microbial mats. Int Microbiol 9:95–102
4. Ciesielski S, Cydzik-Kwiatkowska A, Pokoj T, Klimiuk E (2006) Molecular detection and diversity of medium-chain–length polyhydroxyalkanoates producing bacteria enriched from activated sludge. J Appl Microbiol 101:190–199
5. Ciesielski S, Możejko J, Przybyłek G (2010) The influence of nitrogen limitation on mcl-PHA synthesis by two newly isolated strains of Pseudomonas sp. J Ind Microbiol Biotechnol 37:511–520
6. Choi MH, Xu J, Rho JK, Zhao XP, Yoon SC (2010) Enhanced production of longer side-chain polyhydroxyalkanoic acid with omega-aromatic group substitution in phaZ-disrupted Pseudomonas fluorescens BM07 mutant through unrelated carbon source cometabolism and salicylic acid beta-oxidation inhibition. Bioresour Technol 101:4540–4548
7. Dawes EA, Senior PJ (1973) The role and regulation of energy reserve polymers in micro-organisms. Adv Microb Physiol 10:135–266
8. Goh YS, Tan IKP (2012) Polyhydroxyalkanoate production by antarctic soil bacteria isolated from Casey Station and Signy Island. Microbiol Res 167:211–219
9. Gounot AM (1991) Bacterial life at low temperature: physiological aspects and biotechnological implications. J Appl Bacteriol 71:386–397
10. Hein S, Paletta JR, Steinbuchel A (2002) Cloning, characterization and comparison of the Pseudomonas mendocina polyhydroxyalkanoate synthases PhaC1 and PhaC2. Appl Microbiol Biotechnol 58:229–236
11. Kadouri D, Jurkevitch E, Okon Y, Castro-Sowinski S (2005) Ecological and agricultural significance of bacterial polyhydroxyalkanoates. Crit Rev Microbiol 31:55–67
12. Knigth V, Sanglier JJ, DiTullio D, Bracelli S, Bonner P, Waters J, Hugnes D, Zhang L (2003) Diversifying microbial natural products for drug discovery. Appl Microbiol Biotechnol 62:446–458
13. López-Cortés A, Lanz-Landázuri A, García-Maldonado JQ (2008) Screening and isolation of PHB-producing bacteria in a polluted marine microbial mat. Microb Ecol 56:112–120
14. Madison LL, Huisman GW (1999) Metabolic engineering of poly(3-hydroxyalkanoates): from DNA to plastic. Microbiol Mol Biol Rev 63:21–53
15. Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA. Appl Environ Microbiol 59:695–700
16. Peimbert M, Alcaraz LD, Bonilla-Rosso G, Olmedo-Alvarez G, García-Oliva F, Segovia L, Eguiarte LE, Souza V (2012) Comparative metagenomics of two microbial mats at Cuatro Ciénegas basin I: ancient lessons on how to cope with an environment under severe nutrient stress. Astrobiology 12:648–658
17. Pudełko R (2008) Two new topographic maps for sites of scientific interest on King George Island, West Antarctica. Pol Polar Res 29:291–297
18. Reddy GS, Matsumoto GI, Schumann P, Stackebrandt E, Shivaji S (2004) Psychrophilic pseudomonads from Antarctica: Pseudomonas antarctica sp. nov., Pseudomonas meridiana sp. nov. and Pseudomonas proteolytica sp. nov. Int J Syst Evol Microbiol 54:713–719
19. Rehm BH, Steinbüchel A (1999) Biochemical and genetic analysis of PHA synthases and other proteins required for PHA synthesis. Int J Biol Macromol 25:3–19
20. Rehm BH (2003) Polyester synthases: natural catalysts for plastics. Biochem J 376:15–33
21. Rossau R, Duhamel M, Jannes G, Decourt JL, van Heuverswyn H (1991) The development of specific rRNA-derived oligonucleotide probes for Haemophilus ducreyi, the causative agent of chancroid. J Gen Microbiol 137:277–285
22. Romo DMR, Grosso MV, Solano NCM, Castaňo DM (2007) A most effective method for selecting a broad range of short and medium-chain-length polyhydroxyalkanoates producing microorganisms. Electron J Biotechnol 10:348–357
23. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
24. Shivaji S, Ray MK, Seshu Kumar G, Reddy GSN, Saisree L, Wynn-Williams DD (1991) Identification of Janthinobacterium lividum from the soils of the islands of Scotia Ridge and from Antarctic peninsula. Polar Biol 11:267–271
25. Solaiman DKY, Ashby RD, Foglia TA (2000) Rapid identification of medium-chain-length polyhydroxyalkanoate synthase gene by polymerase chain reaction. Appl Microbiol Biotechnol 53:690–694
26. Stackebrandt E, Goebel BM (1994) A place for DNA–DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849
27. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
28. Tindall BJ, Brambilla E, Steffen M, Neumann R, Pukall R, Kroppenstedt RM, Stackebrandt E (2000) Cultivatable microbial biodiversity: gnawing at the Gordian knot. Environ Microbiol 72:310–318
29. ter Braak CJF, Šmilauer P (2002) CANOCO reference manual and CanoDraw for Windows user’s guide: software for canonical community ordination (version 4.5). Microcomputer Power, Ithaca
30. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680
31. Quillaguamán J, Guzmán H, Van-Thuoc D, Hatti-Kaul R (2011) Synthesis and production of polyhydroxyalkanoates by halophiles: current potential and future prospects. Appl Microbiol Biotechnol 85:1687–1696
32. Witholt B, Kessler B (1999) Perspectives of medium chain length poly(hydroxyalkanoates), a versatile set of bacterial bioplastics. Curr Opin Biotechnol 10:2785–2792
33. Van den Burg B (2003) Extremophiles as a source for novel enzymes. Curr Opin Microbiol 6:213–218