RNA-Seq analysis and whole genome DNA-binding profile of the Vibrio cholerae histone-like nucleoid structuring protein (H-NS)

Genomics Data

Volumn 5, Issue , 2015, Pages 147-150

  Ayala, Julio C ^a,b   Wang, Hongxia ^b,c   Benitez, Jorge A ^b   Silva, Anisia J ^b  

^a University of Alabama at Birmingham   (United States)

^b MOREHOUSE SCHOOL OF MEDICINE   (United States)

^c CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

Author keywords

Cholera; H NS; Histone like nucleoid structuring protein; Nucleoid associated protein; Vibrio cholerae

Indexed keywords

GENOMIC DNA; HISTONE LIKE NUCLEOID STRUCTURING PROTEIN; RIBOSOME RNA;

ARTICLE; BACTERIAL VIRULENCE; CELL MOTILITY; CHEMOTAXIS; CHROMATIN IMMUNOPRECIPITATION; DNA BINDING; GENE EXPRESSION; GENE TRANSFER; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STRESS; VIBRIO CHOLERAE;

BACTERIA (MICROORGANISMS); VIBRIO CHOLERAE;

EID: 84930940102     PISSN: 22135960     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gdata.2015.05.039     Document Type: Article

References (10)

1. Wang H., et al. RNA-Seq analysis identifies new genes regulated by the histone-like nucleoid structuring protein (H-NS) affecting Vibrio cholerae virulence,stress response and chemotaxis. PLoS ONE 2015, 10(2):e0118295.
2. Ayala J.C., et al. Repression by H-NS of genes required for the biosynthesis of the Vibrio cholerae biofilm matrix is modulated by the second messenger cyclic diguanylic acid. Mol. Microbiol. 2015, 10.1111/mmi. 13058.
3. Dorman C.J. Genome architecture and global gene regulation in bacteria: making progress towards a unified model?. Nat. Rev. Microbiol. 2013, 11(5):349-355.
4. Spurio R., et al. The oligomeric structure of nucleoid protein H-NS is necessary for recognition of intrinsically curved DNA and for DNA bending. EMBO J 1997, 16(7):1795-1805.
5. Dame R.T., Wyman C., Goosen N. Structural basis for preferential binding of H-NS to curved DNA. Biochimie 2001, 83(2):231-234.
6. Navarre W.W., et al. Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 2006, 313(5784):236-238.
7. Silva A.J., et al. Role of the histone-like nucleoid structuring protein in the regulation of rpoS and RpoS-dependent genes in Vibrio cholerae. J. Bacteriol. 2008, 190(22):7335-7345.
8. Wang H., et al. Interaction of the histone-like nucleoid structuring protein and the general stress response regulator RpoS at Vibrio cholerae promoters that regulate motility and hemagglutinin/protease expression. J. Bacteriol. 2012, 194(5):1205-1215.
9. Zhang Y., et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008, 9(9):R137.
10. Carver T., et al. DNAPlotter: circular and linear interactive genome visualization. Bioinformatics 2009, 25(1):119-120.