MALDI-TOF MS-based identification of black yeasts of the genus Exophiala

Medical Mycology

Volumn 53, Issue 4, 2015, Pages 347-352

  Özhak Baysan, Betil ^a   Öʇünç, Dilara ^a   Döʇen, Aylin ^b   Ilkit, Macit ^c   De Hoog, G Sybren ^{d,e,f,g,h,i,j}  

^a AKDENIZ UNIVERSITY   (Turkey)

^b MERSIN UNIVERSITY   (Turkey)

^c CUKUROVA UNIVERSITY   (Turkey)

^d CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^e UNIVERSITY OF AMSTERDAM   (Netherlands)

^f PEKING UNIVERSITY HEALTH SCIENCE CENTER   (China)

^g SUN YAT SEN UNIVERSITY   (China)

^h SECOND MILITARY MEDICAL UNIVERSITY   (China)

ⁱ FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

^j KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

more..

Author keywords

black yeasts; database; ITS sequencing; MALDI mass spectrometry; species

Indexed keywords

AGAR; GLUCOSE; INTERNAL TRANSCRIBED SPACER; CULTURE MEDIUM;

ARTICLE; CONTROLLED STUDY; EXOPHIALA; EXOPHIALA CRUSTICOLA; EXOPHIALA DERMATITIDIS; EXOPHIALA HETEROMORPHA; EXOPHIALA PHAEOMURIFORMIS; FUNGAL STRAIN; FUNGUS IDENTIFICATION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; SPECIES IDENTIFICATION; TAXONOMIC IDENTIFICATION; CHEMISTRY; CULTURE MEDIUM; CYTOLOGY; EVALUATION STUDY; GROWTH, DEVELOPMENT AND AGING; MASS SPECTROMETRY; MICROBIOLOGICAL EXAMINATION; PROCEDURES; TIME;

CHAETOTHYRIALES; EXOPHIALA; EXOPHIALA DERMATITIDIS; EXOPHIALA HETEROMORPHA;

CULTURE MEDIA; EXOPHIALA; MICROBIOLOGICAL TECHNIQUES; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TIME FACTORS;

EID: 84930862134     PISSN: 13693786     EISSN: 14602709     Source Type: Journal    
DOI: 10.1093/mmy/myu093     Document Type: Article

References (21)

1. de Hoog GS, Guarro J, Figueras MJ., et al. Atlas of clinical fungi: the ultimate benchtool for diagnostics. 4th CD-ROM ed. CBS-KNAW Fungal Biodiversity Centre, Utrecht/Universitat Rovira i Virgili, Reus, 2014.
2. Sudhadham M, Pirakitsin S, Sivichai S., et al. The neurotropic black yeast Exophiala dermatitidis has a possible origin in the tropical rain forest. Stud Mycol 2008; 61: 145-155.
3. Dogen A, Kaplan E, IlkitMet al. Massive contamination of Exophiala dermatitidis and E. phaeomuriformis in railway stations in subtropical Turkey. Mycopathologia 2013; 175: 381-386.
4. Dogen A, Ilkit M, de Hoog GS. Black yeast habitat choices and species spectrum on high altitude creosote-Treated railway ties. Fungal Biol 2013; 117: 692-696.
5. Lian X, de Hoog GS. Indoor wet cells harbour melanized agents of cutaneous infection. Med Mycol 2010; 48: 622-628.
6. Dogen A, Kaplan E, Oksuz Z., et al. Dishwashers are a major source of human opportunistic yeast-like fungi in indoor environments in Mersin, Turkey. Med Mycol 2013; 51: 493-498.
7. Matos T, de Hoog GS, de Boer AG., et al. High prevalence of the neurotrope Exophiala dermatitidis and related oligotrophic black yeasts in sauna facilities. Mycoses 2002; 45: 373-377.
8. Zeng JS, de Hoog GS. Exohiala spinifera and its allies: diagnostics from morphology and to DNA barcoding. MedMycol 2008; 46: 193-208.
9. Heinrichs G, de Hoog GS, Haase G. Barcode identifiers as a practical tool for reliable species assignment of medically important black yeast species. J Clin Microbiol 2012; 50: 3023-3030.
10. Najafzadeh MJ, Dolatabadi S, Saradeghi KeisariMet al. Detection and identification of opportunistic Exophiala species using the rolling circle amplification of ribosomal internal transcribed spacers. J Microbiol Methods 2013; 94: 338-342.
11. Patel R.Matrix-Assisted laser desorption ionization-Time of flight mass spectrometry in clinicalmicrobiology. Clin Infect Dis 2013; 57: 564-572.
12. Posteraro B, de Carolis E, Vella A., et al. MALDI-TOF mass spectrometry in the clinical mycology laboratory: identification of fungi and beyond. Expert Rev Proteomics 2013; 10: 151-164.
13. Kliem M, Sauer S. The essence on mass spectrometry based microbial diagnostics. Curr Opin Microbiol 2012; 15: 397-402.
14. Firacative C, Trilles L, Meyer W. MALDI-TOF MS enables the rapid identification of the major molecular types within the Cryptococcus neoformans/C. gattii species complex. PLoS One 2012; 7: e37566.
15. Marinach C, Alanio A, Palous M., et al. MALDI-TOF MSbased drug susceptibility testing of pathogens: the example of Candida albicans and fluconazole. Proteomics 2009; 9: 4627-4631.
16. Zeng J, Feng P, Gerrits van den Ende AH., et al. Multilocus analysis of the Exophiala jeanselmei clade containing black yeasts involved in opportunistic disease in humans. Fungal Diversity 2014; 65: 3-16.
17. Matos T, Haase G, Gerrits van den Ende AH., et al. Molecular diversity of oligotrophic and neurotropic members of the black yeast genus Exophiala, with accent on E. dermatitidis. Antonie van Leeuwenhoek 2003; 83: 293-303.
18. Kolecka A, Khayhan K, Groenewald M., et al. Identification of medically relevant species of arthroconidial yeasts by use of matrix-Assisted laser desorption ionization-Time of flight mass spectrometry. J Clin Microbiol 2013; 51: 2491-2500.
19. Ranque S, Normand AC, Cassagne C., et al. MALDI-TOF mass spectrometry identification of filamentous fungi in the clinical laboratory. Mycoses 2014; 57: 135-140.
20. Nilsson RH, Ryberg M, Kristiansson E., et al. Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS One 2006; 1: e59.
21. Lian X, Lackner M, de Hoog GS., et al. Assessment of identity of filamentous fungi colonizing from water-damaged building materials. Sydowia 2011; 63: 49-66.