Detection and identification of opportunistic Exophiala species using the rolling circle amplification of ribosomal internal transcribed spacers

Journal of Microbiological Methods

Volumn 94, Issue 3, 2013, Pages 338-342

  Najafzadeh, M J ^a,b   Dolatabadi, S ^b   Saradeghi Keisari, M ^b,c   Naseri, A ^d   Feng, P ^b,e   de Hoog, G S ^{b,e,f,g,h,i,j}  

^a MASHHAD UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^b CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^c MASHHAD UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^d MASHHAD UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^e SUN YAT SEN UNIVERSITY   (China)

^f UNIVERSITY OF AMSTERDAM   (Netherlands)

^g PEKING UNIVERSITY HEALTH SCIENCE CENTER   (China)

^h SECOND MILITARY MEDICAL UNIVERSITY   (China)

ⁱ FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

^j KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

more..

Author keywords

Black yeasts; Exophiala; Identification; Rolling circle amplification

Indexed keywords

INTERNAL TRANSCRIBED SPACER; RIBOSOME DNA;

ARTICLE; CHEMONUCLEOLYSIS; CONTROLLED STUDY; DNA EXTRACTION; EXOPHIALA; EXOPHIALA DERMATITIDIS; EXOPHIALA JEANSELMEI; EXOPHIALA OLIGOSPERMA; EXOPHIALA SPINIFERA; EXOPHIALA XENOBIOTICA; FUNGAL DETECTION; FUNGAL GENETICS; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; GENE AMPLIFICATION; GENE SEQUENCE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REPRODUCIBILITY; ROLLING CIRCLE AMPLIFICATION; SENSITIVITY ANALYSIS; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM;

BLACK YEASTS; EXOPHIALA; IDENTIFICATION; ROLLING CIRCLE AMPLIFICATION;

DNA PROBES; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; EXOPHIALA; HUMANS; MYCOLOGICAL TYPING TECHNIQUES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PHAEOHYPHOMYCOSIS; SEQUENCE ANALYSIS, DNA;

EID: 84882765479     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2013.06.026     Document Type: Article

References (33)

1. Badali H., de Hoog G.S., Curfs-Breuker I., Meis J.F. In vitro activities of antifungal drugs against Rhinocladiella mackenziei, an agent of fatal brain infection. J. Antimicrob. Chemother. 2010, 65:175-177.
2. Chang X., Li R., Yu J., Bao X., Qin J. Phaeohyphomycosis of the central nervous system caused by Exophiala dermatitidis in a 3-year-old immunocompetent host. J. Child Neurol. 2009, 24:342-345.
3. Ciardo D.E., Schar G., Bottger E.C., Altwegg M., Bosshard P.P. Internal transcribed spacer sequencing versus biochemical profiling for identification of medically important yeasts. J. Clin. Microbiol. 2006, 44:77-84.
4. Davari M., van Diepeningen A.D., Babai-Ahari A., Arzanlou M., Najafzadeh M.J., van der Lee T.A., de Hoog G.S. Rapid identification of Fusarium graminearum species complex using rolling circle amplification (RCA). J. Microbiol. Methods 2012, 89:63-70.
5. de Hoog G.S., Vicente V., Caligiorne R.B., Kantarcioglu S., Tintelnot K., Gerrits van den Ende A.H.G., Haase G. Species diversity and polymorphism in the Exophiala spinifera clade containing opportunistic black yeast-like fungi. J. Clin. Microbiol. 2003, 41:4767-4778.
6. de Hoog G.S., Vicente V.A., Najafzadeh M.J., Harrak M.J., Badali H., Seyedmousavi S. Waterborne Exophiala species causing disease in cold-blooded animals. Persoonia 2011, 27:46-72.
7. Deng S., de Hoog G.S., Badali H., Yang L., Najafzadeh M.J., Pan B., Curfs-Breuker I., Meis J.F., Liao W. In vitro antifungal susceptibility of Cladophialophora carrionii, an agent of human chromoblastomycosis. Antimicrob. Agents Chemother. 2013, 57:1974-1977.
8. Döǧen A., Kaplan E., Ilkit M., de Hoog G.S. Massive Contamination of Exophiala dermatitidis and E. phaeomuriformis in Railway Stations in Subtropical Turkey. Mycopathologia 2013, 175:381-386.
9. Engemann J., Kaye K., Cox G., Perfect J., Schell W., McGarry S.A., Patterson K., Edupuganti S., Cook P., Rutala W.A., Weber D.J., Hoffmann K.K., Engel J., Young S., Durant E., McKinnon K., Cobb N., Bell L., Gibson J., Jernigan D., Arduino M., Fridkin S., Archibald L., Sehulster L., Morgan J., Hajjeh R., Brandt M., Warnoch D., Duffus W.A. Exophiala infection from contaminated injectable steroids prepared by a compounding pharmacy-United States, July-November 2002. Morbid. Mortal. Weekly Rep. 51, 1109-1112, 2002. J. Am. Med. Assoc. 2003, 289:291-293.
10. Feng P., Najafzadeh M.J., Sun J., Ahmed S., Xi L., de Hoog G.S., Lai W., Lu C., Klaassen C.H., Meis J.F. In vitro activities of nine antifungal drugs against 81 Phialophora and Cyphellophora isolates. Antimicrob. Agents Chemother. 2012, 56:6044-6047.
11. Feng P., Klaassen C.H., Meis J.F., Najafzadeh M.J., Gerrits van den Ende A.H.G., Xi L., de Hoog G.S. Identification and typing of isolates of Cyphellophora and relatives by use of amplified fragment length polymorphism and rolling circle amplification. J. Clin. Microbiol. 2013, 51:931-937.
12. Hamzehei H., Yazdanparast S.A., Mohammad Davoudi M., Khodavaisy S., Golehkheyli M., Ansari S., de Hoog G.S., Badali H. Use of rolling circle amplification to rapidly identify species of Cladophialophora potentially causing human infection. Mycopathologia 2013, 175:431-438.
13. Heinrichs G., de Hoog G.S., Haase G. Barcode identifiers as a practical tool for reliable species assignment of medically important black yeast species. J. Clin. Microbiol. 2012, 50:3023-3030.
14. Kondori N., Gilljam M., Lindblad A., Jonsson B., Moore E.R., Wenneras C. High rate of Exophiala dermatitidis recovery in the airways of patients with cystic fibrosis is associated with pancreatic insufficiency. J. Clin. Microbiol. 2011, 49:1004-1009.
15. Kong F., Tong Z., Chen X., Sorrell T., Wang B., Wu Q., Ellis D., Chen S. Rapid identification and differentiation of Trichophyton species, based on sequence polymorphisms of the ribosomal internal transcribed spacer regions, by rolling-circle amplification. J. Clin. Microbiol. 2008, 46:1192-1199.
16. Lackner M., Najafzadeh M.J., Sun J., Lu Q., Hoog G.S. Rapid identification of Pseudallescheria and Scedosporium strains by using rolling circle amplification. Appl. Environ. Microbiol. 2012, 78:126-133.
17. Liou J.M., Wang J.T., Wang M.H., Wang S.S., Hsueh P.R. Phaeohyphomycosis caused by Exophiala species in immunocompromised hosts. J. Formos. Med. Assoc. 2002, 101:523-526.
18. Najafzadeh M.J., Badali H., Illnait-Zaragozi M.T., de Hoog G.S., Meis J.F. In vitro activities of eight antifungal drugs against 55 clinical isolates of Fonsecaea spp. Antimicrob. Agents Chemother. 2010, 54:1636-1638.
19. Najafzadeh M.J., Sun J., Vicente V., Xi L., Gerrits van den Ende A.H.G., de Hoog G.S. Fonsecaea nubica sp. nov, a new agent of human chromoblastomycosis revealed using molecular data. Med. Mycol. 2010, 48:800-806.
20. Najafzadeh M.J., Sun J., Vicente V.A., de Hoog G.S. Rapid identification of fungal pathogens by rolling circle amplification using Fonsecaea as a model. Mycoses 2011, 54:e577-e582.
21. Oztas E., Odemis B., Kekilli M., Kurt M., Dinc B.M., Parlak E., Kalkanci A., Sasmaz N. Systemic phaeohyphomycosis resembling primary sclerosing cholangitis caused by Exophiala dermatitidis. J. Med. Microbiol. 2009, 58:1243-1246.
22. Pihet M., Carrere J., Cimon B., Chabasse D., Delhaes L., Symoens F., Bouchara J.P. Occurrence and relevance of filamentous fungi in respiratory secretions of patients with cystic fibrosis - a review. Med. Mycol. 2009, 47:387-397.
23. Revankar S.G., Sutton D.A. Melanized fungi in human disease. Clin. Microbiol. Rev. 2010, 23:884-928.
24. Schoch C.L., Seifert K.A., Huhndorf S., Robert V., Spouge J.L., Levesque C.A., Chen W., Fungal Barcoding C., Fungal Barcoding Consortium Author L. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:6241-6246.
25. Seyedmousavi S., Badali H., Chlebicki A., Zhao J., Prenafeta-Boldu F.X., de Hoog G.S. Exophiala sideris, a novel black yeast isolated from environments polluted with toxic alkyl benzenes and arsenic. Fungal Biol. 2011, 115:1030-1037.
26. Sudhadham M., Prakitsin S., Sivichai S., Chaiyarat R., Dorrestein G.M., Menken S.B., de Hoog G.S. The neurotropic black yeast Exophiala dermatitidis has a possible origin in the tropical rain forest. Stud. Mycol. 2008, 61:145-155.
27. Tsui C.K., Woodhall J., Chen W., Levesque C.A., Lau A., Schoen C.D., Baschien C., Najafzadeh M.J., de Hoog G.S. Molecular techniques for pathogen identification and fungus detection in the environment. IMA Fungus 2011, 2:177-189.
28. Woo P.C., Ngan A.H., Tsang C.C., Ling I.W., Chan J.F., Leung S.Y., Yuen K.Y., Lau S.K. Clinical spectrum of exophiala infections and a novel Exophiala species, Exophiala Hongkongensis. J. Clin. Microbiol. 2013, 51(1):260-267.
29. Woollons A., Darley C.R., Pandian S., Arnstein P., Blackee J., Paul J. Phaeohyphomycosis caused by Exophiala dermatitidis following intra-articular steroid injection. Br. J. Dermatol. 1996, 135:475-477.
30. Zalar P., Novak M., de Hoog G.S., Gunde-Cimerman N. Dishwashers - a man-made ecological niche accommodating human opportunistic fungal pathogens. Fungal Biol. 2011, 115:997-1007.
31. Zeng J.S., de Hoog G.S. Exophiala spinifera and its allies: diagnostics from morphology to DNA barcoding. Med. Mycol. 2008, 46:193-208.
32. Zeng J.S., Sutton D.A., Fothergill A.W., Rinaldi M.G., Harrak M.J., de Hoog G.S. Spectrum of clinically relevant Exophiala species in the United States. J. Clin. Microbiol. 2007, 45:3713-3720.
33. Zhou X., Kong F., Sorrell T.C., Wang H., Duan Y., Chen S.C. Practical method for detection and identification of Candida, Aspergillus, and Scedosporium spp. by use of rolling-circle amplification. J. Clin. Microbiol. 2008, 46:2423-2427.