메뉴 건너뛰기




Volumn 16, Issue 5, 2015, Pages 11550-11573

De Novo assembly and characterization of the transcriptome of the Chinese medicinal herb, Gentiana rigescens

Author keywords

Gentiana rigescens; Gentiopicroside; Regulation; Transcriptome

Indexed keywords

GENTIOPICRIN; TERPENOID; TRANSCRIPTOME; IRIDOID; TERPENE; TRANSCRIPTION FACTOR;

EID: 84930619192     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms160511550     Document Type: Article
Times cited : (48)

References (75)
  • 1
    • 84867176727 scopus 로고    scopus 로고
    • Variation of botanical morphologic characteristics between wild and cultivated populations of gentiana rigescens in yunnan-guizhou plateau
    • Yang, Y.; Shao, A.; Jin, H.; Ou, X.; Chen, M.; Liu, D.; Huang, L. Variation of botanical morphologic characteristics between wild and cultivated populations of Gentiana rigescens in Yunnan-Guizhou Plateau. Chin. Tradit. Herb. Drugs 2012, 43, 1604-1610.
    • (2012) Chin. Tradit. Herb. Drugs , vol.43 , pp. 1604-1610
    • Yang, Y.1    Shao, A.2    Jin, H.3    Ou, X.4    Chen, M.5    Liu, D.6    Huang, L.7
  • 2
    • 84930618141 scopus 로고    scopus 로고
    • accessed on 13 July
    • Chinanews. Available online: http://www.chinanews.com/gn/2013/07-12/5037538.shtml (accessed on 13 July 2013).
    • (2013) Chinanews
  • 3
    • 80054942306 scopus 로고    scopus 로고
    • Genetic diversity and gentiopicroside content of four gentiana species in china revealed by issr and hplc methods
    • Zheng, P.; Zhang, K.; Wang, Z. Genetic diversity and gentiopicroside content of four Gentiana species in China revealed by ISSR and HPLC methods. Biochem. Syst. Ecol. 2011, 39, 704-710.
    • (2011) Biochem. Syst. Ecol , vol.39 , pp. 704-710
    • Zheng, P.1    Zhang, K.2    Wang, Z.3
  • 4
    • 84870535429 scopus 로고    scopus 로고
    • Use of gibberellic acid to overcome the allelopathic effect of a range of species on the germination of seeds of gentiana rigescens, a medicinal herb
    • Zhang, J.; Wang, Y.; Yang, T.; Jin, H.; Zhang, J. Use of gibberellic acid to overcome the allelopathic effect of a range of species on the germination of seeds of Gentiana rigescens, a medicinal herb. Seed Sci. Technol. 2012, 40, 443-447.
    • (2012) Seed Sci. Technol , vol.40 , pp. 443-447
    • Zhang, J.1    Wang, Y.2    Yang, T.3    Jin, H.4    Zhang, J.5
  • 5
    • 0005720459 scopus 로고
    • Gentiopicroside is located in the vacuoles of root protoplasts of gentiana lutea
    • Keller, F. Gentiopicroside is located in the vacuoles of root protoplasts of Gentiana lutea.. J Plant Physiol. 1986, 122, 473-476.
    • (1986) J Plant Physiol , vol.122 , pp. 473-476
    • Keller, F.1
  • 6
    • 85017791466 scopus 로고    scopus 로고
    • Contents analysis of gentiopicroside in wild and tissue culture seedlings of gentiana rigescens
    • Zhu, H.; Zheng, C.; Zhao, P.; Li, Y.; Yang, C.; Zhang, Y. Contents analysis of gentiopicroside in wild and tissue culture seedlings of Gentiana rigescens. Nat. Prod. Res. Dev. 2011, 23, 482-485.
    • (2011) Nat. Prod. Res. Dev , vol.23 , pp. 482-485
    • Zhu, H.1    Zheng, C.2    Zhao, P.3    Li, Y.4    Yang, C.5    Zhang, Y.6
  • 8
    • 79961112983 scopus 로고    scopus 로고
    • The common and variation peak ratio dual index sequence analysis in uv fingerprint spectra of gentiana rigescens
    • Yuan, T.; Wang, Y.; Zhao, Y.; Zhang, J.; Jin, H.; Zhang, J. The common and variation peak ratio dual index sequence analysis in UV fingerprint spectra of Gentiana Rigescens. Spectrosc. Spectr. Anal. 2011, 31, 2161-2165.
    • (2011) Spectrosc. Spectr. Anal , vol.31 , pp. 2161-2165
    • Yuan, T.1    Wang, Y.2    Zhao, Y.3    Zhang, J.4    Jin, H.5    Zhang, J.6
  • 10
    • 84870066979 scopus 로고    scopus 로고
    • Construction of the first genetic linkage map of japanese gentian (gentianaceae)
    • Nakatsuka, T.; Yamada, E.; Saito, M.; Hikage, T.; Ushiku, Y.; Nishihara, M. Construction of the first genetic linkage map of Japanese gentian (Gentianaceae). BMC Genomics 2012, 13, doi:10.1186/1471-2164-13-672.
    • (2012) BMC Genomics , vol.13
    • Nakatsuka, T.1    Yamada, E.2    Saito, M.3    Hikage, T.4    Ushiku, Y.5    Nishihara, M.6
  • 11
    • 85017804286 scopus 로고    scopus 로고
    • Karyotype analysis of chromosomes in gentiana manshurica
    • Sun, T.; Li, S.; Cong, W. Karyotype analysis of chromosomes in Gentiana manshurica. J. Qiqihar Norm. Univ.: Nat. Sci1996, 16, 61-62.
    • (1996) J. Qiqihar Norm. Univ.: Nat. Sci , vol.16 , pp. 61-62
    • Sun, T.1    Li, S.2    Cong, W.3
  • 12
    • 79954565749 scopus 로고    scopus 로고
    • Production of picotee-type flowers in japanese gentian by cres-t. Plant biotechnol
    • Nakatsuka, T.; Saito, M.; Yamada, E.; Nishihara, M. Production of picotee-type flowers in Japanese gentian by CRES-T. Plant Biotechnol. Nar. 2011, 28, 173-180.
    • (2011) Nar , vol.28 , pp. 173-180
    • Nakatsuka, T.1    Saito, M.2    Yamada, E.3    Nishihara, M.4
  • 13
    • 84855713168 scopus 로고    scopus 로고
    • Single-base substitution suppresses flower color mutation caused by a novel miniature inverted-repeat transposable element in gentian. Mol. genet
    • Nishihara, M.; Hikage, T.; Yamada, E.; Nakatsuka, T. A single-base substitution suppresses flower color mutation caused by a novel miniature inverted-repeat transposable element in gentian. Mol. Genet. Genomics 2011, 286, 371-382.
    • (2011) Genomics , vol.286 , pp. 371-382
    • Nishihara, M.1    Hikage, T.2    Yamada, E.3    Nakatsuka, T.A.4
  • 15
    • 84908462299 scopus 로고    scopus 로고
    • Effects of tree species on seed germination and seedlings growth of chinese medicinal herb gentiana rigescens
    • Zhang, J.; Zhang, J.; Wang, Y.; Yang, S.; Yang, M.; Effects of tree species on seed germination and seedlings growth of Chinese medicinal herb Gentiana rigescens. Allelopath. J. 2012, 29, 325-332.
    • (2012) Allelopath. J , vol.29 , pp. 325-332
    • Zhang, J.1    Zhang, J.2    Wang, Y.3    Yang, S.4    Yang, M.5
  • 16
    • 84861648541 scopus 로고    scopus 로고
    • Determination of mineral elements in gentiana rigescens from different zones of yunnan
    • Zhang, J.; Yuan, T.; Wang, Y.; Zhao, Y.; Zhang, J.; Jin, H. Determination of mineral elements in Gentiana rigescens from different zones of Yunnan, China. Biol. Trace Elem. Res. 2012, 147, 329-333.
    • (2012) China. Biol. Trace Elem. Res , vol.147 , pp. 329-333
    • Zhang, J.1    Yuan, T.2    Wang, Y.3    Zhao, Y.4    Zhang, J.5    Jin, H.6
  • 18
    • 84884846971 scopus 로고    scopus 로고
    • Rigenolide a, a new secoiridoid glucoside with a cyclobutane skeleton, and three new acylated secoiridoid glucosides from gentiana rigescens franch
    • Suyama, Y.; Kurimoto, S.; Kawazoe, K.; Murakami, K.; Sun, H.D.; Li, S.L.; Takaishi, Y.; Kashiwada, Y. Rigenolide A, a new secoiridoid glucoside with a cyclobutane skeleton, and three new acylated secoiridoid glucosides from Gentiana rigescens Franch. Fitoterapia 2013, 91, 166-172.
    • (2013) Fitoterapia , vol.91 , pp. 166-172
    • Suyama, Y.1    Kurimoto, S.2    Kawazoe, K.3    Murakami, K.4    Sun, H.D.5    Li, S.L.6    Takaishi, Y.7    Kashiwada, Y.8
  • 21
    • 84876083730 scopus 로고    scopus 로고
    • A reference transcriptome and inferred proteome for the salamander notophthalmus viridescens
    • Abdullayev, I.; Kirkham, M.; Björklund, Å.K.; Simon, A.; Sandberg, R. A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens. Exp. Cell Res. 2013, 319, 1187-1197.
    • (2013) Exp. Cell Res , vol.319 , pp. 1187-1197
    • Abdullayev, I.1    Kirkham, M.2    Björklund, Å.K.3    Simon, A.4    Sandberg, R.5
  • 22
    • 84890442816 scopus 로고    scopus 로고
    • De novo transcriptome analysis of liriodendron chinense petals and leaves by illumina sequencing
    • Yang, Y.; Xu, M.; Luo, Q.; Wang, J.; Li, H. De novo transcriptome analysis of Liriodendron chinense petals and leaves by Illumina sequencing. Gene 2014, 534, 155-162.
    • (2014) Gene , vol.534 , pp. 155-162
    • Yang, Y.1    Xu, M.2    Luo, Q.3    Wang, J.4    Li, H.5
  • 23
    • 77954603236 scopus 로고    scopus 로고
    • Ribulose-1,5-bisphosphate carboxylase/oxygenase genes as a functional marker for chemolithoautotrophic halophilic sulfur-oxidizing bacteria in hypersaline habitats
    • Tourova, T.P.; Kovaleva, O.L.; Sorokin, D.Y.; Muyzer, G. Ribulose-1,5-bisphosphate carboxylase/oxygenase genes as a functional marker for chemolithoautotrophic halophilic sulfur-oxidizing bacteria in hypersaline habitats. Microbiology 2010, 156, 2016-2025.
    • (2010) Microbiology , vol.156 , pp. 2016-2025
    • Tourova, T.P.1    Kovaleva, O.L.2    Sorokin, D.Y.3    Muyzer, G.4
  • 24
    • 84930655447 scopus 로고    scopus 로고
    • Insights into late embryogenesis abundant (lea) proteins in plants: From structure to the functions
    • Amara, I.; Zaidi, I.; Masmoudi, K.; Ludevid, M.D.; Pagès, M.; Goday, A.; Brini, F. Insights into Late Embryogenesis Abundant (LEA) Proteins in Plants: From Structure to the Functions. Am. J. Plant. Sci. 2014, 5, 3440-3455.
    • (2014) Am. J. Plant. Sci , vol.5 , pp. 3440-3455
    • Amara, I.1    Zaidi, I.2    Masmoudi, K.3    Ludevid, M.D.4    Pagès, M.5    Goday, A.6    Brini, F.7
  • 25
    • 79958768782 scopus 로고    scopus 로고
    • Group 3 late embryogenesis abundant protein in arabidopsis: Structure, regulation, and function
    • Zhao, P.; Liu, F.; Zheng, G.; Liu, H. Group 3 late embryogenesis abundant protein in Arabidopsis: Structure, regulation, and function. Acta Physiol. Plant 2011, 33, 1063-1073.
    • (2011) Acta Physiol. Plant , vol.33 , pp. 1063-1073
    • Zhao, P.1    Liu, F.2    Zheng, G.3    Liu, H.4
  • 26
    • 84910637053 scopus 로고    scopus 로고
    • Overexpression of late embryogenesis abundant 14 enhances arabidopsis salt stress tolerance. Biochem. biophys
    • Jia, F.; Qi, S.; Li, H.; Liu, P.; Li, P.; Wu, C.; Zheng, C.; Huang, J. Overexpression of Late Embryogenesis Abundant 14 enhances Arabidopsis salt stress tolerance. Biochem. Biophys. Res. Commun. 2014, 454, 505-511.
    • (2014) Res. Commun , vol.454 , pp. 505-511
    • Jia, F.1    Qi, S.2    Li, H.3    Liu, P.4    Li, P.5    Wu, C.6    Zheng, C.7    Huang, J.8
  • 27
    • 84907678853 scopus 로고    scopus 로고
    • Group 5 lea protein, zmlea5c, enhance tolerance to osmotic and low temperature stresses in transgenic tobacco and yeast
    • Liu, Y.; Wang, L.; Jiang, S.; Pan, J.; Cai, G.; Li, D. Group 5 LEA protein, ZmLEA5C, enhance tolerance to osmotic and low temperature stresses in transgenic tobacco and yeast. Plant Physiol. Biochem. 2014, 84, 22-31.
    • (2014) Plant Physiol. Biochem , vol.84 , pp. 22-31
    • Liu, Y.1    Wang, L.2    Jiang, S.3    Pan, J.4    Cai, G.5    Li, D.6
  • 28
    • 78149497053 scopus 로고    scopus 로고
    • Structure and expression profiling of a novel calcium-dependent protein kinase gene pgcdpk1a in roots, leaves, and cell cultures of panax ginseng
    • Kiselev, K.V.; Turlenko, A.V.; Zhuravlev, Y.N. Structure and expression profiling of a novel calcium-dependent protein kinase gene PgCDPK1a in roots, leaves, and cell cultures of Panax ginseng. Plant Cell Tissue Organ 2010, 103, 197-204.
    • (2010) Plant Cell Tissue Organ , vol.103 , pp. 197-204
    • Kiselev, K.V.1    Turlenko, A.V.2    Zhuravlev, Y.N.3
  • 29
    • 79952297233 scopus 로고    scopus 로고
    • A novel interaction between ccamk and a protein containing the scythe_n ubiquitin-like domain in lotus japonicus
    • Kang, H.; Zhu, H.; Chu, X.; Yang, Z.; Yuan, S.; Yu, D.; Wang, C.; Hong, Z.; Zhang, Z. A novel interaction between CCaMK and a protein containing the Scythe_N ubiquitin-like domain in Lotus japonicus. Plant Physiol. 2011, 155, 1312-1324.
    • (2011) Plant Physiol , vol.155 , pp. 1312-1324
    • Kang, H.1    Zhu, H.2    Chu, X.3    Yang, Z.4    Yuan, S.5    Yu, D.6    Wang, C.7    Hong, Z.8    Zhang, Z.9
  • 30
    • 77954291945 scopus 로고    scopus 로고
    • A dominant function of ccamk in intracellular accommodation of bacterial and fungal endosymbionts
    • Hayashi, T.; Banba, M.; Shimoda, Y.; Kouchi, H.; Hayashi, M.; Imaizumi-Anraku, H. A dominant function of CCaMK in intracellular accommodation of bacterial and fungal endosymbionts. Plant J. 2010, 63, 141-154.
    • (2010) Plant J , vol.63 , pp. 141-154
    • Hayashi, T.1    Banba, M.2    Shimoda, Y.3    Kouchi, H.4    Hayashi, M.5    Imaizumi-Anraku, H.6
  • 31
    • 84857749700 scopus 로고    scopus 로고
    • Nuclear-localized and deregulated calcium- and calmodulin-dependent protein kinase activates rhizobial and mycorrhizal responses in lotus japonicus
    • Takeda, N.; Maekawa, T.; Hayashi, M. Nuclear-localized and deregulated calcium- and calmodulin-dependent protein kinase activates rhizobial and mycorrhizal responses in Lotus japonicus. Plant Cell 2012, 24, 810-822.
    • (2012) Plant Cell , vol.24 , pp. 810-822
    • Takeda, N.1    Maekawa, T.2    Hayashi, M.3
  • 32
    • 84893104044 scopus 로고    scopus 로고
    • Calcium/calmodulin-dependent protein kinase is negatively and positively regulated by calcium, providing a mechanism for decoding calcium responses during symbiosis signaling
    • Miller, J.B.; Pratap, A.; Miyahara, A.; Zhou, L.; Bornemann, S.; Morris, R.J.; Oldroyd, G.E. Calcium/Calmodulin-dependent protein kinase is negatively and positively regulated by calcium, providing a mechanism for decoding calcium responses during symbiosis signaling. Plant Cell 2013, 25, 5053-5066.
    • (2013) Plant Cell , vol.25 , pp. 5053-5066
    • Miller, J.B.1    Pratap, A.2    Miyahara, A.3    Zhou, L.4    Bornemann, S.5    Morris, R.J.6    Oldroyd, G.E.7
  • 33
    • 84857775647 scopus 로고    scopus 로고
    • Rhizobial and fungal symbioses show different requirements for calmodulin binding to calcium calmodulin-dependent protein kinase in lotus japonicus
    • Shimoda, Y.; Han, L.; Yamazaki, T.; Suzuki, R.; Hayashi, M.; Imaizumi-Anraku, H. Rhizobial and fungal symbioses show different requirements for calmodulin binding to calcium calmodulin-dependent protein kinase in Lotus japonicus. Plant Cell 2012, 24, 304-321.
    • (2012) Plant Cell , vol.24 , pp. 304-321
    • Shimoda, Y.1    Han, L.2    Yamazaki, T.3    Suzuki, R.4    Hayashi, M.5    Imaizumi-Anraku, H.6
  • 34
    • 84864527213 scopus 로고    scopus 로고
    • Activation of calcium- and calmodulin-dependent protein kinase (ccamk), the central regulator of plant root endosymbiosis
    • Singh, S.; Parniske, M. Activation of calcium- and calmodulin-dependent protein kinase (CCaMK), the central regulator of plant root endosymbiosis. Curr. Opin. Plant Biol. 2012, 15, 444-453.
    • (2012) Curr. Opin. Plant Biol , vol.15 , pp. 444-453
    • Singh, S.1    Parniske, M.2
  • 35
    • 84865504636 scopus 로고    scopus 로고
    • Nitric oxide-activated calcium/calmodulin-dependent protein kinase regulates the abscisic acid-induced antioxidant defence in maize
    • Ma, F.; Lu, R.; Liu, H.; Shi, B.; Zhang, J.; Tan, M.; Zhang, A.; Jiang, M. Nitric oxide-activated calcium/calmodulin-dependent protein kinase regulates the abscisic acid-induced antioxidant defence in maize. J. Exp. Bot. 2012, 63, 4835-4847.
    • (2012) J. Exp. Bot , vol.63 , pp. 4835-4847
    • Ma, F.1    Lu, R.2    Liu, H.3    Shi, B.4    Zhang, J.5    Tan, M.6    Zhang, A.7    Jiang, M.8
  • 37
    • 84867135497 scopus 로고    scopus 로고
    • Functional assessment of the medicago truncatula nip/latd protein demonstrates that it is a high-affinity nitrate transporter
    • Bagchi, R.; Salehin, M.; Adeyemo, O.S.; Salazar, C.; Shulaev, V.; Sherrier, D.J.; Dickstein, R. Functional assessment of the Medicago truncatula NIP/LATD protein demonstrates that it is a high-affinity nitrate transporter. Plant Physiol. 2012, 160, 906-916.
    • (2012) Plant Physiol , vol.160 , pp. 906-916
    • Bagchi, R.1    Salehin, M.2    Adeyemo, O.S.3    Salazar, C.4    Shulaev, V.5    Sherrier, D.J.6    Dickstein, R.7
  • 38
    • 84936817061 scopus 로고    scopus 로고
    • A 150 kda plasma membrane complex of atnrt2.5 and atnar2.1 is the major contributor to constitutive high-affinity nitrate influx in arabidopsis thaliana
    • Kotur, Z.; Glass, A.D. A 150 kDa plasma membrane complex of AtNRT2.5 and AtNAR2.1 is the major contributor to constitutive high-affinity nitrate influx in Arabidopsis thaliana. Plant Cell Environ. 2014, doi:10.1111/pce.12496.
    • (2014) Plant Cell Environ
    • Kotur, Z.1    Glass, A.D.2
  • 39
    • 84870683286 scopus 로고    scopus 로고
    • Transcriptome analysis reveals putative genes involved in iridoid biosynthesis in rehmannia glutinosa
    • Sun, P.; Song, S.; Zhou, L.; Zhang, B.; Qi, J.; Li, X. Transcriptome analysis reveals putative genes involved in iridoid biosynthesis in Rehmannia glutinosa. Int. J. Mol. Sci. 2012, 13, 13748-13763.
    • (2012) Int. J. Mol. Sci , vol.13 , pp. 13748-13763
    • Sun, P.1    Song, S.2    Zhou, L.3    Zhang, B.4    Qi, J.5    Li, X.6
  • 40
    • 84898656979 scopus 로고    scopus 로고
    • Triterpenoid saponin biosynthetic pathway profiling and candidate gene mining of the ilex asprella root using rna-seq
    • Zheng, X.; Xu, H.; Ma, X.; Zhan, R.; Chen, W. Triterpenoid saponin biosynthetic pathway profiling and candidate gene mining of the Ilex asprella root using RNA-Seq. Int. J. Mol. Sci. 2014, 15, 5970-5987.
    • (2014) Int. J. Mol. Sci , vol.15 , pp. 5970-5987
    • Zheng, X.1    Xu, H.2    Ma, X.3    Zhan, R.4    Chen, W.5
  • 41
    • 84894207903 scopus 로고    scopus 로고
    • Transcriptome analysis of medicinal plant salvia miltiorrhiza and identification of genes related to tanshinone biosynthesis
    • Yang, L.; Ding, G.; Lin, H.; Cheng, H.; Kong, Y.; Wei, Y.; Fang, X.; Liu, R.; Wang, L.; Transcriptome analysis of medicinal plant Salvia miltiorrhiza and identification of genes related to tanshinone biosynthesis. PLoS ONE 2013, 8, e80464.
    • (2013) Plos ONE , pp. 8
    • Yang, L.1    Ding, G.2    Lin, H.3    Cheng, H.4    Kong, Y.5    Wei, Y.6    Fang, X.7    Liu, R.8    Wang, L.9
  • 42
    • 84881229668 scopus 로고    scopus 로고
    • Analysis of the dendrobium officinale transcriptome reveals putative alkaloid biosynthetic genes and genetic markers
    • Guo, X.; Li, Y.; Li, C.; Luo, H.; Wang, L.; Qian, J.; Luo, X.; Xiang, L.; Song, J.; Analysis of the Dendrobium officinale transcriptome reveals putative alkaloid biosynthetic genes and genetic markers. Gene 2013, 527, 131-138.
    • (2013) Gene , vol.527 , pp. 131-138
    • Guo, X.1    Li, Y.2    Li, C.3    Luo, H.4    Wang, L.5    Qian, J.6    Luo, X.7    Xiang, L.8    Song, J.9
  • 43
    • 84874938417 scopus 로고    scopus 로고
    • Cytochrome p450-enzymes involved in the biosynthesis of mono-and sesquiterpenes
    • Weitzel, C.; Simonsen, H.T. Cytochrome P450-enzymes involved in the biosynthesis of mono-and sesquiterpenes. Phytochem. Rev. 2015, 14, 7-24.
    • (2015) Phytochem. Rev , vol.14 , pp. 7-24
    • Weitzel, C.1    Simonsen, H.T.2
  • 44
    • 84872171321 scopus 로고    scopus 로고
    • Plant p450s as versatile drivers for evolution of species-specific chemical diversity
    • Hamberger, B.; Bak, S. Plant P450s as versatile drivers for evolution of species-specific chemical diversity. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2013, 368, 1-16.
    • (2013) Philos. Trans. R. Soc. Lond. B Biol. Sci , vol.368 , pp. 1-16
    • Hamberger, B.1    Bak, S.2
  • 45
    • 84897110959 scopus 로고    scopus 로고
    • 7-deoxyloganetic acid synthase catalyzes a key 3 step oxidation to form 7-deoxyloganetic acid in catharanthus roseus iridoid biosynthesis
    • Salim, V.; Wiens, B.; Masada-Atsumi, S.; Yu, F.; de Luca, V. 7-deoxyloganetic acid synthase catalyzes a key 3 step oxidation to form 7-deoxyloganetic acid in Catharanthus roseus iridoid biosynthesis. Phytochemistry 2014, 101, 23-31.
    • (2014) Phytochemistry , vol.101 , pp. 23-31
    • Salim, V.1    Wiens, B.2    Masada-Atsumi, S.3    Yu, F.4    De Luca, V.5
  • 47
    • 84888419759 scopus 로고    scopus 로고
    • A 7-deoxyloganetic acid glucosyltransferase contributes a key step in secologanin biosynthesis in madagascar periwinkle
    • Asada, K.; Salim, V.; Masada-Atsumi, S.; Edmunds, E.; Nagatoshi, M.; Terasaka, K.; Mizukami, H.; de Luca, V. A 7-deoxyloganetic acid glucosyltransferase contributes a key step in secologanin biosynthesis in Madagascar periwinkle. Plant Cell 2013, 25, 4123-4134.
    • (2013) Plant Cell , vol.25 , pp. 4123-4134
    • Asada, K.1    Salim, V.2    Masada-Atsumi, S.3    Edmunds, E.4    Nagatoshi, M.5    Terasaka, K.6    Mizukami, H.7    De Luca, V.8
  • 48
    • 0034490132 scopus 로고    scopus 로고
    • Indole alkaloid biosynthesis in catharanthus roseus: New enzyme activities and identification of cytochrome p450 cyp72a1 as secologanin synthase
    • Irmler, S.; Schröder, G.; St-Pierre, B.; Crouch, N.P.; Hotze, M.; Schmidt, J.; Strack, D.; Matern, U.; Schröder, J. Indole alkaloid biosynthesis in Catharanthus roseus: New enzyme activities and identification of cytochrome P450 CYP72A1 as secologanin synthase. Plant J. 2000, 24, 797-804.
    • (2000) Plant J , vol.24 , pp. 797-804
    • Irmler, S.1    Schröder, G.2    St-Pierre, B.3    Crouch, N.P.4    Hotze, M.5    Schmidt, J.6    Strack, D.7    Matern, U.8    Schröder, J.9
  • 49
    • 77954541593 scopus 로고    scopus 로고
    • Overexpression of g10h and orca3 in the hairy roots of catharanthus roseus improves catharanthine production
    • Wang, C.T.; Liu, H.; Gao, X.S.; Zhang, H.X. Overexpression of G10H and ORCA3 in the hairy roots of Catharanthus roseus improves catharanthine production. Plant Cell Rep. 2010, 29, 887-894.
    • (2010) Plant Cell Rep , vol.29 , pp. 887-894
    • Wang, C.T.1    Liu, H.2    Gao, X.S.3    Zhang, H.X.4
  • 50
    • 84889103030 scopus 로고    scopus 로고
    • Virus-induced gene silencing identifies catharanthus roseus 7-deoxyloganic acid-7-hydroxylase, a step in iridoid and monoterpene indole alkaloid biosynthesis
    • Salim, V.; Yu, F.; Altarejos, J.; Luca, V. Virus-induced gene silencing identifies Catharanthus roseus 7-deoxyloganic acid-7-hydroxylase, a step in iridoid and monoterpene indole alkaloid biosynthesis. Plant J. 2013, 76, 754-765.
    • (2013) Plant J , vol.76 , pp. 754-765
    • Salim, V.1    Yu, F.2    Altarejos, J.3    Luca, V.4
  • 56
    • 84925341689 scopus 로고    scopus 로고
    • Molecular cloning and expression analysis of wrky transcription factor genes in salvia miltiorrhiza
    • Li, C.; Li, D.; Shao, F.; Lu, S. Molecular cloning and expression analysis of WRKY transcription factor genes in Salvia miltiorrhiza. BMC Genomics 2015, 16, doi:10.1186/s12864-015-1411-x.
    • (2015) BMC Genomics , vol.16
    • Li, C.1    Li, D.2    Shao, F.3    Lu, S.4
  • 57
    • 2442710524 scopus 로고    scopus 로고
    • Characterization of gawrky1, a cotton transcription factor that regulates the sesquiterpene synthase gene (+)-δ-cadinene synthase-a
    • Xu, Y.; Wang, J.; Wang, S.; Wang, J.; Chen, X. Characterization of GaWRKY1, a cotton transcription factor that regulates the sesquiterpene synthase gene (+)-δ-cadinene synthase-A. Plant Physiol. 2004, 135, 507-515.
    • (2004) Plant Physiol , vol.135 , pp. 507-515
    • Xu, Y.1    Wang, J.2    Wang, S.3    Wang, J.4    Chen, X.5
  • 58
    • 33846597097 scopus 로고    scopus 로고
    • Identification of a wrky protein as a transcriptional regulator of benzylisoquinoline alkaloid biosynthesis in coptis japonica
    • Kato, N.; Dubouzet, E.; Kokabu, Y.; Yoshida, S.; Taniguchi, Y.; Dubouzet, J.G.; Yazaki, K.; Sato, F. Identification of a WRKY protein as a transcriptional regulator of benzylisoquinoline alkaloid biosynthesis in Coptis japonica. Plant Cell Physiol. 2007, 48, 8-18.
    • (2007) Plant Cell Physiol , vol.48 , pp. 8-18
    • Kato, N.1    Dubouzet, E.2    Kokabu, Y.3    Yoshida, S.4    Taniguchi, Y.5    Dubouzet, J.G.6    Yazaki, K.7    Sato, F.8
  • 59
    • 84901689537 scopus 로고    scopus 로고
    • Rna sequencing on solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters
    • Spyropoulou, E.A.; Haring, M.A.; Schuurink, R.C. RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics 2014, 15, doi:10.1186/1471-2164-15-402.
    • (2014) BMC Genomics , vol.15
    • Spyropoulou, E.A.1    Haring, M.A.2    Schuurink, R.C.3
  • 60
    • 82755176592 scopus 로고    scopus 로고
    • The transcription factor crwrky1 positively regulates the terpenoid indole alkaloid biosynthesis in catharanthus roseus
    • Suttipanta, N.; Pattanaik, S.; Kulshrestha, M.; Patra, B.; Singh, S.K.; Yuan, L. The transcription factor CrWRKY1 positively regulates the terpenoid indole alkaloid biosynthesis in Catharanthus roseus. Plant Physiol. 2011, 157, 2081-2093.
    • (2011) Plant Physiol , vol.157 , pp. 2081-2093
    • Suttipanta, N.1    Pattanaik, S.2    Kulshrestha, M.3    Patra, B.4    Singh, S.K.5    Yuan, L.6
  • 61
    • 84891163602 scopus 로고    scopus 로고
    • Promoter analysis reveals cis-regulatory motifs associated with the expression of the wrky transcription factor crwrky1 in catharanthus roseus
    • Yang, Z.; Patra, B.; Li, R.; Pattanaik, S.; Yuan, L. Promoter analysis reveals cis-regulatory motifs associated with the expression of the WRKY transcription factor CrWRKY1 in Catharanthus roseus. Planta 2013, 238, 1039-1049.
    • (2013) Planta , vol.238 , pp. 1039-1049
    • Yang, Z.1    Patra, B.2    Li, R.3    Pattanaik, S.4    Yuan, L.5
  • 62
    • 57449104828 scopus 로고    scopus 로고
    • Induced plant defenses in the natural environment: Nicotiana attenuata wrky3 and wrky6 coordinate responses to herbivory
    • Skibbe, M.; Qu, N.; Galis, I.; Baldwin, I.T. Induced plant defenses in the natural environment: Nicotiana attenuata WRKY3 and WRKY6 coordinate responses to herbivory. Plant Cell 2008, 20, 1984-2000.
    • (2008) Plant Cell , vol.20 , pp. 1984-2000
    • Skibbe, M.1    Qu, N.2    Galis, I.3    Baldwin, I.T.4
  • 63
    • 72649084086 scopus 로고    scopus 로고
    • Isolation and characterization of aawrky1, an artemisia annua transcription factor that regulates the amorpha-4,11-diene synthase gene, a key gene of artemisinin biosynthesis
    • Ma, D.; Pu, G.; Lei, C.; Ma, L.; Wang, H.; Guo, Y.; Chen, J.; Du, Z.; Wang, H.; Li, G. Isolation and characterization of AaWRKY1, an Artemisia annua transcription factor that regulates the amorpha-4,11-diene synthase gene, a key gene of artemisinin biosynthesis. Plant Cell Physiol. 2009, 50, 2146-2161.
    • (2009) Plant Cell Physiol , vol.50 , pp. 2146-2161
    • Ma, D.1    Pu, G.2    Lei, C.3    Ma, L.4    Wang, H.5    Guo, Y.6    Chen, J.7    Du, Z.8    Wang, H.9    Li, G.10
  • 64
    • 84887637109 scopus 로고    scopus 로고
    • Ttg2-regulated development is related to expression of putative auxin response factor genes in tobacco
    • Zhu, Q.; Li, B.; Mu, S.; Han, B.; Cui, R.; Xu, M.; You, Z.; Dong, H. TTG2-regulated development is related to expression of putative AUXIN RESPONSE FACTOR genes in tobacco. BMC Genomics 2013, 14, doi:10.1186/1471-2164-14-806.
    • (2013) BMC Genomics , vol.14
    • Zhu, Q.1    Li, B.2    Mu, S.3    Han, B.4    Cui, R.5    Xu, M.6    You, Z.7    Dong, H.8
  • 65
    • 84881526440 scopus 로고    scopus 로고
    • De novo sequencing and transcriptome analysis of wolfiporia cocos to reveal genes related to biosynthesis of triterpenoids
    • Shu, S.; Chen, B.; Zhou, M.; Zhao, X.; Xia, H.; Wang, M. De novo sequencing and transcriptome analysis of Wolfiporia cocos to reveal genes related to biosynthesis of triterpenoids. PLoS ONE 2013, 8, e71350.
    • (2013) Plos ONE , pp. 8
    • Shu, S.1    Chen, B.2    Zhou, M.3    Zhao, X.4    Xia, H.5    Wang, M.6
  • 67
    • 79952390994 scopus 로고    scopus 로고
    • Fast identification and removal of sequence contamination from genomic and metagenomic datasets
    • Schmieder, R.; Edwards, R. Fast identification and removal of sequence contamination from genomic and metagenomic datasets. PLoS ONE 2011, 6, e17288.
    • (2011) Plos ONE , pp. 6
    • Schmieder, R.1    Edwards, R.2
  • 71
    • 79961123152 scopus 로고    scopus 로고
    • Rsem: Accurate transcript quantification from rna-seq data with or without a reference genome
    • Li, B.; Dewey, C. RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinform. 2011, 12, 323.
    • (2011) BMC Bioinform , vol.12 , pp. 323
    • Li, B.1    Dewey, C.2
  • 72
    • 84891793137 scopus 로고    scopus 로고
    • Transcriptome analysis of portunus trituberculatus in response to salinity stress provides insights into the molecular basis of osmoregulation
    • Lv, J.; Liu, P.; Wang, Y.; Gao, B.; Chen, P.; Li, J. Transcriptome Analysis of Portunus trituberculatus in response to salinity stress Provides Insights into the Molecular Basis of Osmoregulation. PLoS ONE 2013, 8, e82155.
    • (2013) Plos ONE , pp. 8
    • Lv, J.1    Liu, P.2    Wang, Y.3    Gao, B.4    Chen, P.5    Li, J.6
  • 73
    • 84865052748 scopus 로고    scopus 로고
    • De novo sequencing and characterization of the floral transcriptome of dendrocalamus latiflorus (poaceae: Bambusoideae)
    • Zhang, X.; Zhao, L.; Larson-Rabin, Z.; Li, D.; Guo, Z. De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae). PLoS ONE 2012, 7, e42082.
    • (2012) Plos ONE , pp. 7
    • Zhang, X.1    Zhao, L.2    Larson-Rabin, Z.3    Li, D.4    Guo, Z.5
  • 74
    • 27544472676 scopus 로고    scopus 로고
    • Automated genome annotation and pathway identification using the kegg orthology (ko) as a controlled vocabulary
    • Mao, X.; Cai, T.; Olyarchuk, J.G.; Wei, L. Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics 2005, 21, 3787-3793.
    • (2005) Bioinformatics , vol.21 , pp. 3787-3793
    • Mao, X.1    Cai, T.2    Olyarchuk, J.G.3    Wei, L.4
  • 75
    • 84875247710 scopus 로고    scopus 로고
    • Transcriptomics in the rna-seq era
    • McGettigan, P.A. Transcriptomics in the RNA-seq era. Curr. Opin. Chem. Biol. 2013, 17, 4-11.
    • (2013) Curr. Opin. Chem. Biol , vol.17 , pp. 4-11
    • McGettigan, P.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.