Randomized ligation control for chromosome conformation capture

Cold Spring Harbor Protocols

Volumn 2015, Issue 6, 2015, Pages 587-592

  Belton, Jon Matthew ^a   Dekker, Job ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; RESTRICTION ENDONUCLEASE; PRIMER DNA;

ABSORPTION SPECTROSCOPY; ANIMAL CELL; ARTICLE; CELL CULTURE; CHROMOSOME CONFORMATION CAPTURE; DNA ISOLATION; GENETIC PARAMETERS; NONHUMAN; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT; CHROMOSOME; CHROMOSOME MAP; CONFORMATION; GENE LIBRARY; GENOMICS; PROCEDURES; YEAST;

CHROMOSOME MAPPING; CHROMOSOMES; DNA PRIMERS; GENE LIBRARY; GENOMICS; NUCLEIC ACID CONFORMATION; POLYMERASE CHAIN REACTION; YEASTS;

EID: 84930267747     PISSN: 19403402     EISSN: 15596095     Source Type: Journal    
DOI: 10.1101/pdb.prot085183     Document Type: Article

References (6)

1. Belton J-M, Dekker J. 2015a. Chromosome conformation capture (3C) in budding yeast. Cold Spring Harb Protoc doi: 10.1101/pdb.prot085175.
2. Belton J-M, Dekker J. 2015b. Chromosome conformation capture carbon copy (5C) in budding yeast. Cold Spring Harb Protoc doi: 10.1101/pdb.prot085191.
3. Dekker J. 2006. The three ‘C’s of chromosome conformation capture: Controls, controls, controls. Nat Methods 3: 17–21.
4. Imakaev M, Fudenberg G, McCord RP, Naumova N, Goloborodko A, Lajoie BR, Dekker J, Mirny LA 2012. Iterative correction of Hi-C data reveals hallmarks of chromosome organization. Nat Methods 9: 999–1003.
5. Naumova N, Smith EM, Zhan Y, Dekker J. 2012. Analysis of long-range chromatin interactions using Chromosome Conformation Capture. Methods 58: 192–203.
6. Yaffe E, Tanay A. 2011. Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nat Genet 43: 1059–1065.