Some problems posed by natural environments for monitoring microorganisms

Methods in Biotechnology

Volumn 12, Issue , 2015, Pages

  Edwards, Clive ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

AGROBACTERIUM TUMEFACIENS; ALIIVIBRIO FISCHERI; ARTICLE; ASPERGILLUS; BACILLUS SUBTILIS; BACTERIAL PHENOMENA AND FUNCTIONS; BACTERIAL VIABILITY; BIOSPHERE; BIOTRANSFORMATION; CULTURABILITY; ENVIRONMENT; ENVIRONMENTAL MONITORING; ESCHERICHIA COLI; FLOW CYTOMETRY; GENE EXPRESSION; MEMBRANE POTENTIAL; MICROBIAL DIVERSITY; MICROCOCCUS LUTEUS; NATURAL ENVIRONMENT; NONHUMAN; PECTOBACTERIUM CAROTOVORUM; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; QUORUM SENSING; RHIZOBIUM LEGUMINOSARUM; SACCHAROMYCES CEREVISIAE; SERRATIA LIQUEFACIENS; STARVATION; STREPTOMYCES COELICOLOR; ULTRAVIOLET RADIATION;

EID: 84930226208     PISSN: 19406061     EISSN: 1940607X     Source Type: Book Series    
DOI: None     Document Type: Article

References (25)

1. Gottschal, J. C. (1990) Phenotypic responses to environmental changes. FEMS Microbiol. Ecol. 74, 93–102
2. Errington, J. (1993) Bacillus subtilis: regulation of gene expression and control of morphogenesis. Microbiol. Rev. 57, 1–33
3. Pickup, R. (1991) Development of methods for the detection of specific bacteria in the environment. J. Gen. Microbiol. 137, 1009–1019
4. Colwell, R. R., Brayton, P., Herrington, D., Tall, B., Huq, A., and Levine, M. M. (1996) Viable but non culturable Vibrio cholerae 01 revert to a cultivable state in the human intestine. World J. Microbiol. Biotechnol. 12, 28–31
5. Edwards, C. (1996) Assessment of viability of bacteria by flow cytometry, in Flow Cytometry Applications in Cell Culture (Al-Rubeai, M. and Emery, A. N., eds.), Marcel Dekker, New York, pp. 291–310
6. Bloomfield, S. F., Stewart, G. S. A., Dodd, C. E. R., Booth, I. R., and Power, E. G. M. (1998) The viable but non-culturable phenomenon explained? Microbiology 144, 1–3
7. Munro, P. M., Flatau, G. N., Clement, R. L., and Gautier, M. J. (1995) Influence of the RpoS (KatF) sigma factor on maintenance of viability and culturability of Escherichia coli and Salmonella typhimurium in seawater. Appl. Environ. Microbiol. 61, 1853–1858
8. Kaprelyants, A. S. and Kell, D. B. (1993) Dormancy in stationary phase cultures of Micrococcus luteus: flow cytometric analysis of starvation and resuscitation. Appl. Environ. Microbiol. 59, 3187–3196
9. Oliver, J. D. (1995) The viable but non-culturable state in the human pathogen Vibrio vulnificus. FEMS Microbiol. Lett. 133, 203–208
10. Doull, J. L. and Vining, L. C. (1995) Global physiological controls, in Genetics and Biochemistry of antibiotic production, (Vining, L. C. and Stuttard, C., eds.), Butterworth-Heinemann, Boston, pp. 9–63
11. Porter, J., Edwards, C., and Pickup, R. (1995) Rapid assessment of physiological status of Escherichia coli using fluorescent probes. J. Appl. Bacteriol. 79, 399–408
12. Kolter, R., Siegele, D. A., and Tormo, A. (1993) The stationary phase of the bacterial life cycle. Ann. Rev. Microbiol. 47, 855–874
13. Zambrano, M. M. and Kolter, R. (1996) GASPing for life in stationary phase. Cell 86, 181–184
14. Loewen, P. C. and Hengge-Aronis R. (1994) The role of the sigma factor σs (KatF) in bacterial global regulation. Ann. Rev. Microbiol. 48, 53–80
15. Foster, J. W. and Spector, M. P. (1995) How Salmonella survive against all the odds. Ann. Rev. Microbiol. 49, 145–174
16. Nystrom, T., Albertson, N. H., Flardh, K., and Kjelleberg, S. (1990) Physiological and molecular adaptation to starvation and recovery from starvation by the marine Vibrio sp. S14. FEMS Microbiol. Ecol. 74, 129–140
17. Koch, A. L. (1997) Microbial physiology and ecology of slow growth. Microbiol. Mol. Biol. Rev. 61, 305–318
18. Cairns, J. and Foster, P. L. (1991) Adaptive reversion of a frameshift mutation in Escherichia coli. Genetics 128, 695–701
19. Rosenberg, S. M. (1997) Mutation for survival. Curr. Opin. Genetics Dev. 7, 829–834
20. Hales, B. A., Edwards, C., Ritchie, D. A., Hall, G., Pickup, R. W., and Saunders, J. R. (1996) Isolation and identification of methanogen-specific DNA from blanket bog peat using PCR amplification and sequence analysis. Appl. Environ. Microbiol. 61, 668–675
21. Matin, A., Little, C. D., Fraley, C. D., and Keyhan, M. (1995) Use of starvation promoters to limit growth and select for trichloroethylene and phenol transformation activity in recombinant Escherichia coli. Appl. Environ. Microbiol. 61, 3323–3328
22. Whiteley, A. S., O’Donnell, A. G., MacNaughton, S. J., and Barer, M. R. (1996) Cytochemical co-localisation and quantitation of phenotypic and genotypic characteristics of individual bacterial cells. Appl. Environ. Microbiol. 62, 1873–1879
23. Fuqua, C., Winans, S. C., and Greenberg, P. R. (1997) Census and consensus in bacterial ecosystems: the LuxR-LuxI family of quorum sensing transcriptional regulators. Ann. Rev. Microbiol. 50, 727–751
24. Shaw, P. D., Ping, G., Daly, S. L., Cha, C., Cronan, J. E., Reinhart, K. L., and Farrand, S. K. (1997) Detecting and characterising N-acyl-homoserine lactone signal molecules by thin layer chromatography. Proc. Natl. Acad. Sci. USA 94, 6036–6041
25. Pace, N. R. (1996) New perspectives on the natural microbial world: molecular microbial ecology. ASM News 62, 463–470.